Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,377,377 | T→A | 16.1% | Y116F (TAT→TTT) | blc ← | outer membrane lipoprotein cell division and growth lipocalin |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,377,377 | 0 | T | A | 16.1% | 174.9 / 4.1 | 73 | Y116F (TAT→TTT) | blc | outer membrane lipoprotein cell division and growth lipocalin |
Reads supporting (aligned to +/- strand): ref base T (56/4); new base A (2/11); total (58/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.65e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTT > NC_000913/4377142‑4377614 | tCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATaa > 1:970191/1‑238 (MQ=255) gCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGGG‑CAATAACG‑GTATAA‑Ccccc > 1:1028004/1‑239 (MQ=255) aaTCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAACGCATGGCGGAATTCCC‑GTACGAGTG‑CAATAACG‑TTATAA‑ACGCCATAgc > 1:197388/1‑238 (MQ=255) tATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCCTAGaaact > 1:833680/1‑236 (MQ=255) tATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGGTCGGGAGAG‑ATTCCACAGGTAGTCCCGGTCCGGG‑CCGCAAACCAGCGACTGCCGGTATTTCG‑GCACGGGGG‑CAACAACG‑GTAAAA‑CCgacttctttaaac > 2:598297/1‑227 (MQ=255) gATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGGCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTGTAA‑CCGCCATAGAATGGAACCAAGa > 1:434614/1‑239 (MQ=255) tattGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAACTGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGGATTCCC‑GATCCAGGG‑CAATAACG‑TTATAA‑CCCCCCAAGAAAGGACCaaaaaaga > 2:672457/1‑237 (MQ=255) tattGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATg > 1:461609/1‑239 (MQ=255) gTCTGGAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGGATTCCC‑GCTCGGGTG‑CAATAACG‑TTAAAA‑CCCCCCTAGAAAAGACCaaaaaagaaaact > 2:780830/1‑232 (MQ=255) gTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCAGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGGAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTTTAA‑CCCCAATAGAAAGGACCAAAGCATGgcagt > 1:432178/1‑237 (MQ=255) tGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTc > 1:621373/1‑239 (MQ=255) cactcactAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCAGTCCGGG‑CCGCCAACCAGCGCATGGCGGTATTCCC‑GACCGAGGG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGAAACTTTaagccc‑agccc > 1:532882/1‑237 (MQ=255) actaactaCCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑ACCGCGAGtt > 1:266274/1‑239 (MQ=255) ccAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAATAATGACACCTTCAGCGA‑AACGCGAGTTG‑GGGCGcc > 1:1048964/1‑239 (MQ=255) aGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCCGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAAGAACACTTTCAGCGA‑AGCGCGGGTT‑‑GTGCGcccgg > 2:211455/1‑236 (MQ=255) aGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACAATTTAAGCCC‑AACCCGAGTTg‑ggggccggg > 2:226461/1‑231 (MQ=255) gctgctGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CACTAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGAACCTTTAAGCGC‑AGCGCGAGTTG‑GTGGGCCGGTa > 1:322331/1‑239 (MQ=255) gctgctGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTa > 1:318316/1‑239 (MQ=255) gctgctGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑ACCGCGAGTTG‑GTGCGCCGGTa > 1:212530/1‑239 (MQ=255) gctgctGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AACGCGAGTTG‑GTGCGCCggga > 1:673466/1‑237 (MQ=255) gctgctGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGCG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCACAGAATGACACTTTCAGCGA‑AGCGCGAGTTG‑GTGCGCCGGTa > 1:212975/1‑239 (MQ=255) ctgTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAga > 1:352352/1‑238 (MQ=255) tgTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCCAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTCTAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAACGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGt > 1:861026/1‑238 (MQ=255) cccAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCt > 1:800419/1‑239 (MQ=255) ataaatTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTc > 1:199103/1‑237 (MQ=255) aTCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCtgctgc > 1:618707/1‑238 (MQ=255) aTCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCCC‑ACCGCGAGTTG‑ATACGCCGGTACAGTACGCTTTCCCTTCACTCTGCTGcc > 1:959057/1‑239 (MQ=255) aTCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCAGGTG‑CACTAACG‑TTATAA‑CAGCCATAGACAGGCACCAAGAATGATACTTTATGCGC‑TGCGCG‑GTGGTGTGCCCCGGGAAAAAACCGTTTCCCTTccccccccagcc > 2:27188/1‑228 (MQ=255) tCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GCTCGAGTG‑AAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATAACACTTTCATCGC‑AACGCGAGTTT‑GGGCGCCGGAAAAGAACGCTTTACATTCCAACCGATGCCACATTca > 2:148553/1‑235 (MQ=255) tCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GGGCGCCGGTAAAGGACGCTTTCCCTTCACTCTGCTGCCACATTcc > 1:36601/1‑236 (MQ=255) tCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACAATTTCAGCGC‑AGCGCGAGTTG‑GTGAGCCGGTAAAGTACGCTTTCCCTTCAATCTGCTGCCACATTcc > 1:96750/1‑236 (MQ=255) tCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAAGACCAAAGAATGGCACTTTCAACGA‑AGCGCGAGTTG‑GTGCGCCGGTAAAGAAAGCTTTTCCTTCCCTCTGCTGCCACATTcc > 1:533011/1‑236 (MQ=255) tCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGGATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GCGCGCCGGTAAAAAACGCTTTCCCTCCCCCCTCCCGCCACATTcc > 2:933576/1‑236 (MQ=255) ccAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGCGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCCGCCCCATTCCCCTGTCAGGGTTAAAGCCt > 2:8644/1‑239 (MQ=255) tCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GGGGGCCGGTAAAGAACGCTTTCCCTTACCCCTCCTGCCCCATTCCCCTGCACGGGTTTAAGCCTTTATTAAAGAAAtta > 2:145255/1‑238 (MQ=255) cTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTcc > 1:152203/1‑180 (MQ=255) cTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTTTCAGGGTTTTAGc > 1:977951/1‑219 (MQ=255) cTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAg > 1:71893/1‑238 (MQ=255) tCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGgc > 1:556157/1‑238 (MQ=255) gtgcggTGGGGGGGAT‑TAGCCAGGGGTTGTCGCGGCCCGCC‑CCCAAACCCAGGGCAGGGGTGTACCCCG‑GATGGAATC‑AAATAAGT‑GTAAAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACg < 2:322331/233‑1 (MQ=255) tgggggtggggAGAGATACCCAGGGGGAGGCGCGGTCCGGC‑CAGCAAACCAGCGGATGGCGGTATCCCC‑GAGTGATAA‑AAATATGG‑TTAAAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACg < 1:780830/230‑1 (MQ=255) cgggCGGGAGAG‑TACCCACGGGTAGGCGC‑GTCCGGGCCCACAACCCGGCGCGGGGCGTTATCCCC‑GAGCGAGTG‑CAATACCG‑TTAAAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAgg < 1:8644/235‑1 (MQ=255) cGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCCAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGGACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGAAATTCAGGCCGCCCTCCTCAACCAGGCGGTa > 2:688590/1‑239 (MQ=255) ag‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAACGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTAAGCTTTCCCTTCCCTCTGCTGCCACATTCCTCTTTCAGGGGTATAGCCTTTATTAATGAACTTCAGGCCGCCGGCCTCCACCAGGCTGGttgttgg > 2:818988/1‑238 (MQ=255) tacacagagggaggcggggccgggg‑CCAAAACCCGGCGGAGGGCGGTATCCCC‑GTTCG‑GTGACAATAAGT‑TTAAAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCgg < 1:145255/217‑1 (MQ=255) ctccagaggctgcgggggTCCGCG‑CCAAAAACCGGCGCATGGCGGTATCCCA‑GGTGGGGTT‑AAATGATG‑TAATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCgg < 1:264620/222‑1 (MQ=255) gTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACtttt > 1:954353/1‑238 (MQ=255) gTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGAATTCCC‑GATCCAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGAGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTCTAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACtttt > 1:215100/1‑238 (MQ=255) aGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGCCCTCACGCAGGCTGTATGTTGCGGTGACTTTTTcc > 1:172461/1‑239 (MQ=255) gTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGCCATTCAgg > 1:19796/1‑196 (MQ=255) gTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACCTTCAGGCCCCCGTCATCACCCAGGCTGTATGCTgtcccttaaacaaatc > 2:60084/1‑224 (MQ=255) gTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTAATCACCCGGGCCGGATGTTGCGGGGACTTTTTcaa > 2:580447/1‑237 (MQ=255) gTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGCCATCACGCAGGCTGTATGTTGGGGGGACTTTTTCCa > 2:677790/1‑239 (MQ=255) tCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTATTGACATTCAGGCCGCCGTCATCACGCAGGCTGTCTGTTGCGGGGCCTTTTTCCa > 1:428102/1‑238 (MQ=255) gggctccacaCCAACGCAGGGGGGTAATCCC‑GCGTGAGGC‑CAATAAAGTTTAAAA‑CCGGCATAGAAAGGACCAAAGAATGACCCTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGtt < 1:516154/230‑1 (MQ=255) aaaCCCGCGCGTGGGTGTATTCCCAGAGCG‑GAG‑CAAATAAG‑TTAAAACCCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCg < 1:226461/239‑1 (MQ=255) aaaCCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCgg > 1:649600/1‑239 (MQ=255) cgcATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCTGCCGTAATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCaa > 1:811083/1‑239 (MQ=255) ggCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGGTGTATGTTTGGGGTACTTTTTCCAGTCCCACTTCAAAACGGGGGTCAAAAggg > 2:439648/1‑239 (MQ=255) ggttttccaggcgcGAGTG‑AAAAACCG‑TAATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg < 1:818988/225‑1 (MQ=255) gcgatatccccggtgggttcaaaTAACG‑TTGAAG‑CCGCCATAGAAAGGACCAACGAATGACCCTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCTGGTAAAGTTCGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg < 1:528512/218‑1 (MQ=255) ctgtctgccgggttcggcg‑CAAAAACG‑TTAACA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg < 1:933576/220‑1 (MQ=255) atttccccc‑GACGGAGTG‑AAATAAGT‑TAATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGc < 1:672457/232‑1 (MQ=255) ggataccccagtcggggtaacaaaaCG‑TAAAAC‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg < 1:439648/215‑1 (MQ=255) tATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAACCGGGCaa > 1:875937/1‑238 (MQ=255) tATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGGATTTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCaa > 1:1039414/1‑238 (MQ=255) cccgtcggtgggaaggtggg‑TTATAT‑CCGGAATAGAAAAGACCAAAGAATGACACTCTCGGCGC‑AGGGCGAGTTG‑GTGGGCAGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCa < 2:959057/220‑1 (MQ=255) cGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAg > 1:803052/1‑239 (MQ=255) aGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTaaa > 1:94758/1‑80 (MQ=255) tG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTa > 1:37132/1‑238 (MQ=255) tcaaaTAACG‑TTTAAC‑CCGACATAAGAAGGACCAAAGAATGACCCGTTCAGCGC‑AGCGAGAGTTG‑GGTCGCCGGTAAAGTCCGCTTTCCCTGCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTAc < 2:1048964/236‑1 (MQ=255) catatccctg‑TTAAAC‑CCCCCCTAGAAATGCCCAAAGAATGCCTCTTTCA‑CGCGAGCCCGAGTTG‑GTGCCCCGTGAAAGTTCGCGTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTAc < 2:557643/230‑1 (MQ=255) ttATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATa > 1:439582/1‑221 (MQ=255) ataA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGCATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGCGATAACGtt > 1:817721/1‑239 (MQ=255) taA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATa > 1:321660/1‑218 (MQ=255) | TCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAG‑TATCCACAGGTAGTCGCGGTCCGGG‑CCGCAAACCAGCGCATGGCGGTATTCCC‑GATCGAGTG‑CAATAACG‑TTATAA‑CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGC‑AGCGCGAGTTG‑GTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTT > NC_000913/4377142‑4377614 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |