| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,290,375 | A→G | 14.5% | E45G (GAG→GGG) | rssB → | PcnB‑degradosome interaction factor, response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,290,375 | 0 | A | G | 14.5% | 184.5 / 3.5 | 79 | E45G (GAG→GGG) | rssB | PcnB‑degradosome interaction factor, response regulator |
| Reads supporting (aligned to +/- strand): ref base A (24/41); new base G (10/2); total (36/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.99e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACATTTGACCAGAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCT > NC_000913/1290142‑1290608 | aaCATTTGACCAGAATTTTTATCTACCCTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGc < 1:171140/239‑1 (MQ=255) gACCAGAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGGGGGTTCCCTTGGGTTGGTgggggg > 2:185147/1‑239 (MQ=255) gACCAGAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGAATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACTGTACTGGCGGCTGCTGGGGTGGGTGCCCTTTGGTTGGTGTGAgg > 1:951998/1‑239 (MQ=255) caaaaTTTTTTTCTTCCATTAAGTTAATTCGGAAAGGGGGAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAAGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGtt < 2:820729/235‑1 (MQ=255) cAGAATTTTTATCTCCACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGttt < 1:766696/239‑1 (MQ=255) gAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGGGGAAGCCCTTTGGTTGCTGGGAGGCTTc > 1:244841/1‑238 (MQ=255) gAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGAATTTCGCTCGCTTCTGGATTAATGGTTTTCCTCATTGGAGGCGCCAACGGTACTGGCGGCTGATTGGGGGGGTGCCCTTGGGTTGCAggagggatta > 2:215767/1‑230 (MQ=255) aaTTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGGGGATGCCCTTGAGTTGCTGGGAGGTTTCa > 1:283202/1‑238 (MQ=255) tttATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCa < 1:18129/239‑1 (MQ=255) atttACCCTTAAGTTAATTTGGACCGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGAc < 2:684709/236‑1 (MQ=255) aTCTACACTTAAGTTAATTCGGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGAc < 1:96093/239‑1 (MQ=255) aTCTACACTTAAGCTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCCGGGGAGAGAACATGACGCAGCCACTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTAGCTTCTGGCTTCATGGCTTTCCTCATTGGGAGCGACAACGGTCCTGGCGGCTCAACGGGTGGATGCCCTTTAGTTGTCGGCAGGCTTCCCTCCCGa > 1:202650/1‑238 (MQ=255) tACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGGGGGTGCCCTTTGGTTGGTGGGAGGGTTTACCCCCGACAtg > 2:986216/1‑239 (MQ=255) cacTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGTTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCtga < 1:687764/238‑1 (MQ=255) cacTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGAGTGGGTGGAGTCCCTTGAGTTGCTGGGGGGTTTCACTCCAGACCtgat > 1:684709/1‑239 (MQ=255) aaGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGTAGCGACAACGGTACTGGCGGCTGATGGGGGGGAGGCCCTTGGGTTGCTGGGGGGGTTccacccagcccctagtaaaa > 2:639464/1‑220 (MQ=255) aaTTCTGACATGAGCAGGCGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGTAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCACTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGGTGATGGGGTGGATGCCCTTCAGATGCCGGGAGGTTTCACTCCAGCCCTGATGGTT‑TGGGat > 2:687764/1‑239 (MQ=255) aaTTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGGGGATGCCCTTTGGTTGGTGGGGGGTTTTACCCCAACCCTGATGATA‑tgtggg > 2:1035337/1‑237 (MQ=255) ggcAGGGGGCAATGGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACCTGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGcc < 1:1058437/237‑1 (MQ=255) cgcAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGGTAT‑CGCGATGcc > 1:580977/1‑238 (MQ=255) gTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGCTGGGGGGGATGCCCTTAGGTTGCTGGGAGGTTTCCCTCCGGACCTGATGATA‑TGTGAGAT‑CGCGATCCCAGGAAt > 1:370732/1‑239 (MQ=255) gTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAAt > 1:897885/1‑239 (MQ=255) cAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGaa < 2:897885/238‑1 (MQ=255) cAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGaa < 1:665341/238‑1 (MQ=255) cAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGaa < 1:797174/238‑1 (MQ=255) cAAGAGCATGGCACTATTGAATAAAGCCAAGCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGGAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGaa < 1:136977/238‑1 (MQ=255) gCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCt < 1:173589/239‑1 (MQ=255) aTGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATAGGGTGGATGCCCTTGGGTTGCTGGGGGGGTTCCCTCCAGACCTGTTGTAT‑TGTG‑TATACGCGGTGCCACGAAAGAACGGGGTTa > 2:867321/1‑239 (MQ=255) gCCAATATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTaaa < 1:756007/239‑1 (MQ=255) cTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAActgc < 1:1035337/239‑1 (MQ=255) tATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAActgct < 1:108175/239‑1 (MQ=255) aTTGAGTAAAGGCAGTTAGGGGAGAGAACGTGGCGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAActgctg < 1:58811/239‑1 (MQ=255) aGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTTGAGc > 1:172339/1‑239 (MQ=255) gTAAAGCCAGTAAGGGGAGAGAACAAGGCGCAGCCATTGGTCTGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGc < 1:367133/238‑1 (MQ=255) tAAAGCCAGTCAGGGGAGAGAACATGACGCAGGCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGttt < 2:162326/172‑1 (MQ=255) tAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTTAGTTGCTGGGAGGTTTTACTCCAGACCTGATGATATTGTG‑TAT‑CGGGATGGCCCGACTGAACGGGCTTAAACTGCTGGGGCat > 1:368721/1‑239 (MQ=255) tAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGttt > 1:162326/1‑172 (MQ=255) tAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTCAACTGCTGGGGCat > 1:887941/1‑239 (MQ=255) tAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTACCTCCAAGCCTGATGATA‑TCGGGTAT‑TCCGATGCCCCGCATGAACGGGCTTAAACTGATGGAGcct > 1:612712/1‑237 (MQ=255) aaaGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACATATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCat < 1:986216/238‑1 (MQ=255) aaaGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCat < 1:25581/238‑1 (MQ=255) aaaGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTACGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCat < 1:300777/238‑1 (MQ=255) aGCCCGTCAGGGGAGAGAACTTGTCGCAGCTATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCAtata < 2:484774/239‑1 (MQ=255) aGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGGTGCCCTTGAGTTGCTGGGGGGGTTCACTCCAGACCTGATGTTA‑TGTGATAT‑CGCGATGCCACGACTGAATGGGCATAAAATGGTGGGGCaaaaa > 2:543705/1‑235 (MQ=255) aGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTTGGAGGGTTCACTCCAGACCTTGTGGAA‑TTGGAGAT‑TGCGGTGCCCCGAATGAAAGGGCTTAAACTGCTgggggaaaaa > 2:108175/1‑231 (MQ=255) aGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGCGGTTTCACTCCAGACCTGGTGAGA‑TGTGATAT‑CCCGATTCCCCCAATGAAAGGGCTTAAACAACTGGGGCataaa > 2:58811/1‑237 (MQ=255) gTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGTGTTGCTGGGAGGGTTTCCTCCCGGCCTGGTGGTA‑TGTGATAT‑GGTGGTGCCTGGCAGTAAAGGGCTTAAAACGCTGGGGCATAACCGTaa > 2:620359/1‑239 (MQ=255) gggAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCCCTCCAGACCTGATGATA‑TGTGCTAT‑CGCGATGCCCCGAATGAACGGGCTTAAACTGCTGGGGCATAAACGGAACagag > 2:796696/1‑239 (MQ=255) aTGACGCAGCCATTGGTCGGCAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGGGGATGCCCTTGGGATGCGGGGAGGGTTCACTCCCAACCTGGTGAGC‑GGTGATAT‑CGCGATGCCAGGGAGTAAAGGGCTTAAACCGCCGGAGCCAAAAAGTAAAAGAAGCGACAAGa > 2:564132/1‑238 (MQ=255) gACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGCTTGGGTGGATTCCCTTTAGTTGCGGGGAGGTTTCACTCCCGACCTGATGATA‑TGTTATAT‑TCGGGTGCCACGAATGAACGGGATTAAACTTCCGGGGAATAAACCGAACAGAGGCggaccaaac > 2:716749/1‑230 (MQ=255) aGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGGGGGTTCACTCCAGACCTGCTGATA‑TGTGATAT‑CGGGATGCCACGAATGAACGGGCTTAAACTGCTGGGGCCTATCAGAAACAAAGGCGGCCAAACCCCAgg > 2:817466/1‑237 (MQ=255) aGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑TGCGATGCCACGAATGAACGGGCTTAAACTGCTGGGTCAAATACGGAAAAAGAGCGGCCAAACCCCaagt > 1:462688/1‑236 (MQ=255) gAACACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGGGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCGCTTGCGTTGTTGGGAGGTTTCGCTCCCAGCCTCATGGTA‑TGTGATAT‑CGCGATGCCACCACTGAACAGGCTTCAAATGCTGGCGCATATACGTAACAAAGGCGACCCACCCCCCGTTCTgtgggac > 2:850055/1‑230 (MQ=255) aGATTCCCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACt < 1:817466/239‑1 (MQ=255) aaGATGGGCAGGTATTTCGTTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCCTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGat < 1:1059735/239‑1 (MQ=255) gATGGGGAGGTTTTTCGCTCGCTTCTGTATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGata < 2:580977/238‑1 (MQ=255) gCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGTTGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAAAGGCGACCAGAc > 2:702765/1‑192 (MQ=255) gCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGAc < 1:702765/192‑1 (MQ=255) cAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCa < 1:796696/238‑1 (MQ=255) cggTTTTTCGCTCGCTTTTGGGTTCATGGTTTTCCCTGTTGGGGGGGACAACGGTACGGGCGGGTGATGGGGTGGATGCCCTGGAGTTGCTGGGAGGTTTCACTCCAGACCTGAGGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCaa < 2:612712/237‑1 (MQ=255) aGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCaa < 1:185147/238‑1 (MQ=255) aTTTCGCTCGCTTCTGGATTCAGGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGt < 1:602759/239‑1 (MQ=255) cgctTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTggg < 2:379980/82‑1 (MQ=255) cgctTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTggg > 1:379980/1‑82 (MQ=255) aTGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTgg > 1:94420/1‑227 (MQ=255) aTGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTgg < 2:94420/227‑1 (MQ=255) aTGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCCGGAGCATAAACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGGAAATATGGCAGAAATTGACAAACCGTTACGTCTGGCGTTTGatgatg > 1:911968/1‑239 (MQ=255) gtttttCTTAATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGtt < 2:627647/237‑1 (MQ=255) ttttCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACGCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGaa < 1:988007/116‑1 (MQ=255) tttCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCtga < 2:725599/84‑1 (MQ=255) tttCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCtga > 1:725599/1‑84 (MQ=255) ttGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAAcc < 2:172339/239‑1 (MQ=255) aCAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGGAATCTGCCCCTGAAAATATGGCAGAAAATGCCCAAGCGTTACGTTTGGGCGTTGGAAAGTTTTTGTTGAAAACAGTTaaaaa > 2:798919/1‑237 (MQ=255) ggcTGTTGGGGTGGATTGCCTTTAGTTGCTGGGAGGTTTCCCTCCAGGACTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCtgg < 2:368721/238‑3 (MQ=255) ggcTGATGGGGTGTATGCCCTTGGGTTGTGGGGAGGTTTCCCTCCAGACCTGATTATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGGGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTg < 2:913933/238‑1 (MQ=255) ccTTGGTTTGCTGGGAGGTTTCCCTCCAGGCCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCt < 2:887941/239‑1 (MQ=255) ccTTGAGTTGCTGGGGGGTTTCACTCCAGGCGTTATGATA‑AGTGATGT‑CGCGGTGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCATCCAGAACCAAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCt < 2:244841/239‑1 (MQ=255) ccTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCt < 1:639464/239‑1 (MQ=255) ccTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGGGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCgaga < 1:1064342/227‑1 (MQ=255) | AACATTTGACCAGAATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCAGGTGGCAATAGCATGCCACTATTGAGTAAAGCCAGTCAGGGGAGAGAACATGACGCAGCCATTGGTCGGAAAACAGATTCTCATTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGCGGCTGATGGGGTGGATGCCCTTGAGTTGCTGGGAGGTTTCACTCCAGACCTGATGATA‑TGTGATAT‑CGCGATGCCACGAATGAACGGGCTTAAACTGCTGGAGCATATACGTAACAGAGGCGACCAGACCCCAGTTCTGGTGATATCTGCCACTGAAAATATGGCAGATATTGCCAAAGCGTTACGTCTGGGCGTTGAAGATGTTTTGCTGAAACCAGTTAAAGATCTGAATCGCTTGCGCGAGATGGTTTTTGCCT > NC_000913/1290142‑1290608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |