Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,455,879 | T→C | 17.3% | L239P (CTC→CCC) | paaC → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,455,879 | 0 | T | C | 17.3% | 174.8 / 2.7 | 77 | L239P (CTC→CCC) | paaC | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
Reads supporting (aligned to +/- strand): ref base T (36/24); new base C (4/11); total (41/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.04e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTTTACCGCCGAACTGTTCGATGCCGACGAGATTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCTTTACGCCGACATATTCCGGTTGTCCGGCAACGGAACA > NC_000913/1455655‑1456115 | ttttCCCGCCGAACTTTTCGATGCCGACGGGATTGATATTGCCCTGGGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGc < 2:850589/239‑1 (MQ=255) ccgccgAACCTGTCGAGTGCGACGAAGATGATAATGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGt < 1:445935/239‑1 (MQ=255) cgAACTGTTCGATGCCGACGAGATTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCAGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑c < 1:1002925/239‑1 (MQ=255) gAACTGTTCGATGCCGACGAGATTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGAATCGCACTGGCGGGAAAAAAGGACTGCAAACCGACAACCCT‑GGACC‑CAATC‑TGGGAGAAAGAAAGTATCCTCAGCTGGTACTGCCCCGTCacaa > 2:636483/1‑236 (MQ=255) cTGTTCGATGCCGACGAGATTGAAATTGCACTGAGTGAAGAGGTTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑t < 1:352904/238‑1 (MQ=255) gtCGATGGCGACGAGATTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGAACCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTa < 1:284367/238‑1 (MQ=255) tCGATGCCGACGAGATTGATATTGCAATGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTa < 1:305938/238‑1 (MQ=255) gATGCCGAGGAGGTTGATTTTGCCCTGAGGGAAGGGGGTATTGGGGTTGATCCCCGCACTTTACGCGCAGCGGGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACa < 2:462508/239‑1 (MQ=255) tGCCGACGAGATTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑TGACC‑CATGC‑TGGCAGGAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACaag > 1:900653/1‑237 (MQ=255) gCCGACGAGATTGATTTTGCACTGAGTGAAGAGGGTTGTGCGGTTGATCCACGCCCTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACagag < 2:389242/239‑1 (MQ=255) cgaGATTGATATTGCAATGAGGGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGGGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGgaga < 1:536650/238‑1 (MQ=255) cgaAATTGAAATTGCACTGAGTGAAGAGGGTATTGCGGTTTATCCCCGCAGTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCTCATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAGGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGgaga < 1:256904/238‑1 (MQ=255) aTTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGAACTGCATACCGACCACCTT‑TGACCACAT‑C‑TGGCGGAAATGCAGTAACTCCAGCGTGTCTTTCCCGGTCAA‑Cacagggaaaaaagggagggggg > 2:840492/1‑218 (MQ=255) atatTGCACTGAGGGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGc < 1:880047/239‑1 (MQ=255) tatTGCACTGGGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCa < 1:926910/239‑1 (MQ=255) tatTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGgaga < 1:777136/229‑1 (MQ=255) gCACTGAGTGAAGAGGGTAGTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑Gt < 1:311209/239‑1 (MQ=255) cACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATTTCCAGCGTGTCTTGCCCGGTCAG‑CAC‑TGGTAACAGAGGAGATGGGGATGCAAC‑gcc > 1:59741/1‑237 (MQ=255) gtggAAGGGGGTTTTGGGGTTTATCCCCGCATTTTCCGCCGAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGc < 2:905341/235‑1 (MQ=255) aGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTCAAAAAGGACTGCATACCCAAAACCTT‑TGACC‑CCTAC‑GGGCTGAAATCGAGAACTCCCACCGTGGCTTTCCCCGGCAG‑CAA‑AGGGAAAAG‑Ggagaatggggtggcaagtgcgggc > 2:1032414/1‑218 (MQ=255) aGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTTCATACCGAACACCCT‑GGACC‑CATGC‑TGGCAGAAATGCAGAATCTACACCGGGACTTGGCCGGGCCC‑CAA‑GCGGAACAAAGGAGAAggggctgaaaatggctctt > 2:777136/1‑223 (MQ=255) aGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAAAACCTT‑TGACC‑CCAGC‑TGGCAGAAATACAGAATCTCCACCGGGTCTTTCCCCGTCAG‑CAA‑TGGTAAAAAaggggagggggaacgcaagctgggcc > 2:836354/1‑223 (MQ=255) agagGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CCA‑TGGTAACAGAGGGGATGGGGATTCACC‑GTCTGGCCACCAt > 1:421553/1‑239 (MQ=255) gggggTATTGGGGTTGTCCCACGCACTTTGCGGGGGGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAGCGAAGCCACGTTGAACG‑TACCGCAAGAGCAGGGGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTG‑GGGCC‑CATGC‑TGGCAGAAATGCAGTATCTCCGGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTGTGCAAC‑GTCTGGccaccgt < 2:253983/236‑3 (MQ=255) gTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGGGGCTTGCCCGGGCAG‑CAA‑TGGTAAAAAAGGAGATGGGGATGCAAA‑GACTGGCCACCATTgaa > 1:905341/1‑236 (MQ=255) tATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACa < 1:288500/201‑1 (MQ=255) cgtttgtcccccgccgtttACGCCGGGCGGGGGAGGCCGAAGTTTT‑GGCCGGTAACAAGGAACCCCAATTGAACG‑TCCCGCAAGAGCGGGGGTATCGTCCGGGGTGTAAAAAAGGACTGCATACCGAACCCCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCCCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCcac < 2:1067767/223‑1 (MQ=255) ttGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGCCTGCATACCGAACACCTT‑GGACC‑CATGC‑GGGCCGAAATGCAGGATCCCCAACCTGTCTTGCCCGGGCAG‑CAC‑TGGTAACAAAGGGAGTGGGGATTGAACGGTCGGGCCCCCA‑TGCACCCCCACCgg > 2:1060332/1‑239 (MQ=255) ctttcccgcgcgGGGGGGGAAGCCAAAGTTTT‑GGCCGGGATCAACGAAGCCACATTGAACG‑TCCCGCAAGAGCAGGCGTACCGCACTGGCGGTAAAAAAGGACTGCATACCGAACCCCTT‑GGCCC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGata < 1:197721/233‑1 (MQ=255) ttttCCGCGCGGGGGGGGAAGCC‑AAGTTTTGGGGGGGGAACAAGGAAGCAACATTGACCG‑TACCGAAAGAGCAGGCGTAGCGCATGGGGGGAAAAAAAGGCCGGAATACCGAACCCCTG‑GGACC‑CATGC‑GGGAAGAAAGGCAGTATCCCCAGGGGGTCGTGCCCGGGCAG‑AAA‑GGGTAACAGAGGAGATGGGTAGGAAAC‑GTCGGGCCACCATTGCACCGCCACAGGTT‑CATGAGatat < 2:421553/238‑1 (MQ=255) tACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCCCATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTGAAAAAAGACGGGATACCCACAAACAC‑GGACC‑CAAGC‑TGGCAGAGATGCGGTATCTACAGCCAGTCTTTCCCGGTCAG‑ACA‑TGGGGAAAGGAGAGATGGGGAAGGCAA‑GCCTGGCCACCACAGCCCCACcacaaatgacagagaaggggg > 2:926143/1‑222 (MQ=255) tACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCACCCGGTT‑CATGAGaaattg > 1:264494/1‑236 (MQ=255) tACGCGCAGCATGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGGATGCAAC‑GTCTGGCCACCCTTGCACCCCCACAGGTG‑CATggagtaaggt > 1:1065245/1‑230 (MQ=255) cAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTa > 1:148103/1‑238 (MQ=255) gCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTTCCCGGTCAG‑CAA‑TGGGAACAGAGGAGATGGGTATGCAAC‑GGCTGGCCACCATTGCACCGCCACCGGGT‑CATGAGATATGGGCGCTACTc > 1:1073451/1‑239 (MQ=255) gCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGGAAAAAAGGACTGCACACCCAAAACCTT‑GGACC‑CCTGC‑CGGCAGAAATGGCGTATCGCCAACCTGTCTTGCCCGGTCTG‑CAA‑AGGGTACAGAGGAGCTGGGCATGAAAC‑GCATGGGCACCATTTCCCCGCCACAGGTT‑ACCGAGAAAAGGGCGTGACTc > 2:630191/1‑239 (MQ=255) tccggggacacaagagcccACA‑TGAACGTTACCGAAAGGGCGGGCGTATCCCCTGGGCGGAAAAAAGGGACTGCACA‑CGAACCCCTTGGGACC‑CATGC‑GGGAAAAAAGGCAGTATCCCAGGGGTTTCTTGCCCGGCAAG‑CAA‑GGGTAAAAGAGGAGAGGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATcccgg‑acccgga < 2:1065245/222‑1 (MQ=255) gATCAACGAACCCCAATTGAACG‑TACCGCAAGGGCAGGCGTTTGCCATGGGAGGTAAAAAAGGACTGCATCCCGAACCCCTT‑GGCCC‑ATTGC‑TGGCAGAAATGAAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGGGGAGATGGGTATGCACC‑GTCTGGCCCCCATGGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATcc < 2:148103/238‑1 (MQ=255) aTCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCCT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCCCCAGCGGGGCTTTCCCGGTCAG‑CAA‑TGGTAACAGAGGAAATGGGTTTGCCAC‑GTCTGGCCCCCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCCACTCAGCCAGAACCCGG‑ACCCGGAGAACCCg > 2:180326/1‑239 (MQ=255) aaGCCAATTTGACCG‑TACCGCAAGGGCAGGCGTATCGCACTGGCGGTAAAAAAGGCCTGAATACCGAACACCTT‑GGACC‑CATGC‑TGGAAGAAAGGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCTTTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCt < 1:755723/237‑1 (MQ=255) ccACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGGATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGGATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGGGATCCCGGCGCTGCCCa > 1:579212/1‑239 (MQ=255) caTGGAACG‑TGCCGAAAGAGCAGGCGTTTCGCACGGGAGGAAAAAAAGGACTGCAACCCGAACTCTTG‑GGACC‑CATCC‑TGGCAAAAATGCATTATCTCCAGCTTCTTTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTAGGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTa < 1:33728/239‑1 (MQ=255) aaTTGACCG‑GCCCGCAGGAGCGGGCGTGTCCCCGGGGCGAAAAAAAAGGTCTGCATACCGAACCCCTG‑GGACC‑CATGC‑TGGAAGAAATGAAGTATCCCCAGGTTGTCTGTCCCGGTAAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTa < 2:579212/238‑1 (MQ=255) aCCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGGATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGGGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAg > 1:1064928/1‑238 (MQ=255) aCCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGGAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCCTTTCACCGCCACAGGTT‑CATGAGATATGGGCGCTAATCAGCCAGATCCCGG‑ACCCGGGGATCCCGGGGCTGACCCTTACTGGTTTAg > 1:166701/1‑238 (MQ=255) aCCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTCCATACCGAACACCCT‑GGACC‑CATGC‑TCGGCGAAAAGCAGGATCTCCAGCGTGTCTTGCCCGGGCAG‑TCA‑TGGTAACAGACGACATGGGGCTGCAAC‑GTCCGGCCACCCTTTCAACCCCCAAGGTTCCATGA‑ATTACGGCGCTCCCCCGCCACACCCCCG‑GCCCGGCGATTCCCGTGCTACACAATACTGAattcag > 2:204680/1‑236 (MQ=255) ccGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAACGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGGT‑CATGAGATATGGGGGCTACTCAGCCCGATCCCGG‑ACCCGGAGATCCCGGGGCTGGCCATTACTGGTTTCGGc > 1:315602/1‑239 (MQ=255) aaGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCCGCGTGTCTTTCCCCGTCAG‑CAA‑TGGTAACAAAGGAGATGGGGATGCACC‑GTCTGGCCACCATTCCACCGCCCACGGGT‑CCTGAGATATTGGCGCTAATCCGCCAGATCCCGG‑ACCCGGAGATCCCAGGGCGGACCCTTACTGATTTGGGCAAgg > 2:867610/1‑239 (MQ=255) caggtctacccccgtGGCGGAAAAAAAGGACTTCATCCCAAACCCCTT‑GGACC‑CATGC‑TGGAAGAAATGCAGTATCCCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCg < 1:180326/224‑1 (MQ=255) gggcttcccGCCCTGGGGATAAAAAAGGACTCCATCCCCAACCCTTT‑GGCCC‑CTGGC‑TGGCAGAAATGCATTACCCCCAGCGTGTCTGGCCCGGTAAG‑CAA‑TGGCAACAGAGGAGATGGGTATGCAAC‑GCCTGCCCCCCATTCCCCCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTa < 2:166701/231‑1 (MQ=255) ggCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATAAGGGCGCTACCCAGCCAGATCCCGG‑ACCCGGCGATCCCGGGTCTGCCCATTTCTGATTTAGGCATGGGGCGCaa > 1:986610/1‑239 (MQ=255) gCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CCTGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑c > 1:958855/1‑97 (MQ=255) gCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑c < 2:958855/97‑1 (MQ=255) cGCACTGGCGGTAAAAAAGGACGGCATCCCGAACCCCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCGGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGaca < 1:836354/239‑1 (MQ=255) cggagatgggtataagaaccaggccGAACCCGTT‑GTACC‑CATGC‑TGGCAGAAATGCAGTATCGCCATCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGa < 1:838663/215‑1 (MQ=255) gCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTTCCCGGTCAA‑CCA‑TGGGAACAGAGGAGGTGGGGATGCAAC‑GTCTGGGCCCCATTGCACCCCCACCGGGT‑CATGGGGTATGGGCGCTACTCAACCAACTCCCGGCACCCGG‑GATCCCGGGGCTGAACCTTACCCATTTAGACATgggggggaaagggaaaaagaggg > 2:575055/1‑218 (MQ=255) tAAAAAGGGACCGAATACCGAACCCCTT‑GGACC‑CATGC‑GGGCAAAAATGCAGTTTCCCCAGGGTTTCTGGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGAGGGGTAGGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGgag < 1:702831/238‑1 (MQ=255) tAAAAAAGGCTTGCCTACCGAACCCGTG‑GCACC‑CTGGG‑TGGAAGAAAGCCAGTTTCCCCAGGGTGTC‑TGGCCGGTCAGAAAA‑GGGTAACAGAGGGGAGGGGTAGCCAAC‑GTCGGGCCCCCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGgag < 2:59741/238‑1 (MQ=255) aaGGCCTGCAAACCGAACACCTT‑GGACC‑CATGC‑GGGAAAAAAGTCAGTATCCCCAGCGTGTCTTGCCCGGTCAG‑AAA‑TGGAAACAGAGGGGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGAt < 1:908162/239‑1 (MQ=255) cTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGc < 1:44762/96‑1 (MQ=255) cTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGc > 2:44762/1‑96 (MQ=255) cGAACCCCTT‑GG‑CC‑CCTGCGTGGCAAAAATGCAGTATCCCCAGCGTGTCTTGCCCGGGCAG‑CAA‑TGGTACCAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCtt < 1:371540/239‑1 (MQ=255) aaCACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATggg > 1:797279/1‑131 (MQ=255) acCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTTGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGCCCATTACTGATTTAGGCATGGTGCGTAATGGGCACCAGATGGGAGAAGGATGGGAGATCGGCtttcag > 1:431848/1‑235 (MQ=255) acCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACCCAGATGGGGGAAGGGAGGGGGATGGGCTTTACGc > 2:665923/1‑239 (MQ=255) t‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGCGATCCCGGTGCTGACCTTTACTACTTTGGGCATGGTGCGTAATGTGACACAGCTGGGAGAgggcctgtctcttatcaccatctgcc > 2:838663/1‑215 (MQ=255) tgggccccgtggggggaaaaaTGGATTAGCCCCAGCGTGTC‑TGCCCGGGACG‑AAATTGGGAAGAGAGGAGAGGGTTATCAAAC‑TTCTGGCCCCAATTGGCCCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCTTTACGCCGa < 2:986610/221‑1 (MQ=255) ggACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCTTTACGCCGACa > 1:114041/1‑239 (MQ=255) aTGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCTTTACGCCGACATATTcc > 1:889600/1‑239 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAC‑TGGCAACAGAGGAGATGGGGATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGGAATGTGCCACAGATGGGGGAAGGATGGGGGATCGGCTTTCCGCCGACATTTTCCg > 1:1001305/1‑239 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCCTTACTGATTTAGGCATGGTGCGTAATGTGACACCGATGGTCGAAGGATGGGTGACCGGGTTTCCCCCCCCACATTCCg > 2:956922/1‑239 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGGGATCGGCTTTACGCCGACATATTCCg > 1:803852/1‑239 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGGAATGTGACACCGATGGGAGAAGGATTGGTGATCGGCTTTAGGCCGACGAATTCCg > 2:220319/1‑239 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGGGCGTAATGGGACACAGATGGGGGAAGGATGGGTGATCGGCTTTACGCCGACATATTCCg > 1:440048/1‑239 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGGGCTGACCATTACTGATTTAGGCATGGGGCGTAATGTGACACAGATGGGAGAAGGGTGGGGGATCGGCTTTACGCCGACATATTcgg > 1:974264/1‑237 (MQ=255) tGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGAATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGACGGATGGGTGAACGGCTTTACGCAGACATATTACg > 1:10008/1‑239 (MQ=255) tGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAAt > 1:748712/1‑175 (MQ=255) tctcCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCTTTACGCCGACATATTCCGGTTGTCCGGCAACGGAACa > 1:465263/1‑239 (MQ=255) | TTTTACCGCCGAACTGTTCGATGCCGACGAGATTGATATTGCACTGAGTGAAGAGGGTATTGCGGTTGATCCACGCACTTTACGCGCAGCGTGGGAAGCCGAAGTTTT‑TGCCGGGATCAACGAAGCCACATTGAACG‑TACCGCAAGAGCAGGCGTATCGCACTGGCGGTAAAAAAGGACTGCATACCGAACACCTT‑GGACC‑CATGC‑TGGCAGAAATGCAGTATCTCCAGCGTGTCTTGCCCGGTCAG‑CAA‑TGGTAACAGAGGAGATGGGTATGCAAC‑GTCTGGCCACCATTGCACCGCCACAGGTT‑CATGAGATATGGGCGCTACTCAGCCAGATCCCGG‑ACCCGGAGATCCCGGTGCTGACCATTACTGATTTAGGCATGGTGCGTAATGTGACACAGATGGGAGAAGGATGGGTGATCGGCTTTACGCCGACATATTCCGGTTGTCCGGCAACGGAACA > NC_000913/1455655‑1456115 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |