Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258676 258683 8–776 63 [0] [1] 64 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)59 (0.910) 44/268 0.4 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

GTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/257765‑258043
                                                                                                                                              |                                                                                                                                        
gtgtTAAAAATTTGCTGAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGATACCCAGTGTGGGCCCGACAAACATATTCATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGCAGGTA                                                                                                                                          >  1:1134728‑M1/1‑143 (MQ=255)
 tgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                         <  2:155806‑M1/143‑2 (MQ=255)
 tgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                         <  1:953371‑M1/143‑2 (MQ=255)
 ggttAACAATGTGCTAAATTGTGCCATGTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                         <  2:1138479‑M1/142‑2 (MQ=255)
       aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                   <  2:682631‑M1/143‑8 (MQ=255)
        aaTTTGCTAAATTTTGCCAAGTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa                                                                                                                                  <  2:996706‑M1/143‑9 (MQ=255)
             gCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                             <  2:250372‑M1/143‑14 (MQ=255)
              cTAAATTTTGTCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                            <  2:451201‑M1/143‑15 (MQ=255)
              cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                            <  1:1065426‑M1/143‑15 (MQ=255)
                 aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                         >  1:1080319‑M1/1‑126 (MQ=255)
                 aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                         >  1:1109612‑M1/1‑126 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATAATCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                 >  2:600458‑M1/1‑118 (MQ=255)
                         cAATGTGGTAAAACGGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                 <  2:1067458‑M1/143‑26 (MQ=255)
                           aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                               >  2:1115357‑M1/1‑116 (MQ=255)
                           aTTTGGTAAAACAGAAGCAACACAACAGGAGATAGCAATGACGTAACCGAGTGGACACCCGAAGAGCAGATTGATAAAAAAATTAACCGCACTACGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                               <  1:256697‑M1/143‑28 (MQ=255)
                                  aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                        <  1:889621‑M1/143‑35 (MQ=255)
                                   aaaCAGTTGCATCACAACAGGAGAGAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCCAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTCagtgcaaagataatcgattctttttcgatgttctg                                                                                                       >  1:204097‑M1/1‑108 (MQ=255)
                                     aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                     <  1:1142088‑M1/143‑38 (MQ=255)
                                     aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATGGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgatgatcgcttcctttgggcgtgtctgac                                                                                                     >  1:360312‑M1/1‑106 (MQ=255)
                                      cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                    <  1:976632‑M1/143‑39 (MQ=255)
                                       aGTTGCATCACACCAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                   <  2:342215‑M1/143‑40 (MQ=255)
                                       aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCAATAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcggttgtctggctg                                                                                                   >  1:386604‑M1/1‑104 (MQ=255)
                                          tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCACAAAAGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat                                                                                                <  1:445046‑M1/143‑43 (MQ=255)
                                          tGCATCACAACAGGAGATAGCAATGACGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat                                                                                                <  1:1168374‑M1/143‑43 (MQ=255)
                                              tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                            <  1:410179‑M1/143‑47 (MQ=255)
                                                      ggAGATAGCAATGACGTAACCGAGGGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                    <  1:430652‑M1/143‑55 (MQ=255)
                                                       gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGCTCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtgaa                                                                                   >  1:535355‑M1/1‑88 (MQ=255)
                                                              cAATGACGTTACGGAGGAGACACCCGAAGAGTAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                            <  2:160114‑M1/143‑63 (MQ=255)
                                                                   aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgtgtggacgtgaaaccggacccgga                                                                       >  1:492912‑M1/1‑76 (MQ=255)
                                                                        aCCGAGTGGACACGCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                  <  1:616860‑M1/143‑73 (MQ=255)
                                                                        aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgttagcgtgaaacaggccccgggaatgc                                                                  >  2:186700‑M1/1‑71 (MQ=255)
                                                                                gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggacgggcgcaacttc                                                          >  2:408464‑M1/1‑63 (MQ=255)
                                                                                 acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcagcggaagtgcgtgaattct                                                         >  1:770442‑M1/1‑62 (MQ=255)
                                                                                     ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                     >  1:1137043‑M1/1‑58 (MQ=255)
                                                                                      cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgacttcaggggc                                                    >  1:599010‑M1/1‑57 (MQ=255)
                                                                                      cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaactctggggc                                                    >  1:1197568‑M1/1‑57 (MQ=255)
                                                                                                actgaTCAAAAAATTTACCGCACTAGGCCCGCATACTCGTGAAGGTAagtgcaaagataatcgactctttttctattgtctggctgtatgcgtcaacatgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                          <  1:210948‑M1/141‑97 (MQ=255)
                                                                                                  tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                        >  1:568825‑M1/1‑45 (MQ=255)
                                                                                                  tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                        <  1:668408‑M1/143‑99 (MQ=255)
                                                                                                   gATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagc                                       <  2:341076‑M1/143‑100 (MQ=255)
                                                                                                    aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggcagtgcgtgaatgctggggctggtggagggagct                                      >  2:384052‑M1/1‑43 (MQ=255)
                                                                                                     tCAAAAAATTTACTGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatagtctggctgtatgcgtcaacgtgaaacaggaatacgagatgcgtgaagactgatgctggtggatggagctg                                     >  2:1160045‑M1/1‑42 (MQ=255)
                                                                                                     tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcacagataatcgattcttttacgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagggcggaaactacggggtcggaggatggggctg                                     >  2:144307‑M1/1‑42 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtcttgctgtatgcgtcaacgtgtaaccggcaccggaagtgcgtgaattctggggctggtggctggagctcgc                                   >  2:477602‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                   >  1:18675‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                   >  1:281570‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                   >  1:829734‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                   >  1:829762‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattatagaggtggtggatggagctgga                                   >  2:569611‑M1/1‑40 (MQ=255)
                                                                                                        aaaaaTTCACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgactctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                  <  1:286420‑M1/143‑105 (MQ=255)
                                                                                                          acattTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcttgtcatgctgtatgcgtcaacccgaaacccgcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                <  1:276941‑M1/141‑107 (MQ=255)
                                                                                                             tttACCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcgccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                             <  1:1145581‑M1/143‑110 (MQ=255)
                                                                                                             tctacCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaacataatcgcttctttttcgattgtctggctgtctgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                             <  1:460685‑M1/141‑110 (MQ=255)
                                                                                                              ttACCGCACTAGGCCCGTATATTCGTGAAGGTGagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaagccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                            <  1:535587‑M1/143‑111 (MQ=255)
                                                                                                                    cgctggtccggtatgttcgggAAGGTAagtgcaaagataatcggttctttttcgattgtctggctgtatgcgtcaacgtggcaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcc                      <  2:832895‑M1/133‑117 (MQ=255)
                                                                                                                    cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcc                      >  2:759868‑M1/1‑27 (MQ=255)
                                                                                                                        tagtccgtatATTCGTGAAGTCAagtgaaaatataatcgattttttttcgagtgtctggcgggatgcgtcaacggggaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                  <  1:913867‑M1/139‑121 (MQ=255)
                                                                                                                          gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                <  1:909981‑M1/143‑123 (MQ=255)
                                                                                                                                  ctgctgtagcgtaagtgcaacgatgtgcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag        <  1:544809‑M1/133‑131 (MQ=255)
                                                                                                                                  atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag        >  1:875831‑M1/1‑13 (MQ=255)
                                                                                                                                   ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagt       >  2:448428‑M1/1‑12 (MQ=255)
                                                                                                                                       tGAAGGTAagtgcaaagataatcgattctttttcgattgcctggctgtatgcgtcaacgtgaaaccggccccggaagtgcgtgaattctggggctggtggatggagctggacgcgccggaatcccgttttacctaccgttccc   >  1:655798‑M1/1‑8 (MQ=255)
                                                                                                                                        gactgtaagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtggaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagagcaggaatcccgttttacctacagttacca  <  2:314423‑M1/139‑137 (MQ=255)
                                                                                                                                              |                                                                                                                                        
GTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/257765‑258043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.