New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4295852 = | NA (NA) | 10 (0.150) +TT |
4/280 | 9.7 | NA | noncoding (19/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites |
? | NC_000913 | = 4296414 | NA (NA) | noncoding (581/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
Rejected: Coverage evenness skew score above cutoff. |
TGGGAACACAAATTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC > NC_000913/4295710‑4295970 | tGGCAACACAAATTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGcc < 1:1082818/143‑1 (MQ=255) gagccacgagtgtGACCGTAAGAAAGCGCGGGCTTCTGAGGGGGAAGTGCTGGGGAATTTTCACAAAGCTTCGGCTCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCcgc < 1:1192543/131‑1 (MQ=255) acacAAATTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTc > 1:1117679/1‑143 (MQ=255) caAATTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:719885/1‑143 (MQ=255) caAATTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:821588/1‑143 (MQ=255) aTTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCa > 1:715962/1‑143 (MQ=255) aTTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCa > 2:1196478/1‑143 (MQ=255) aTTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:412285/143‑1 (MQ=255) ttGACCGTAAGAAAGCGCTGGCTTATTAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:207663/143‑1 (MQ=255) gtGACCGTAGGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:434732/142‑1 (MQ=255) ccGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa > 2:379524/1‑143 (MQ=255) ccGTAAGAAAGCGCTGGCTTAGGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 2:54226/143‑1 (MQ=255) gTAAGAAAGCGCTGGCTTATAAGCGTGAAGTGCTGGGCAAATTTGATAAACCTGATTTCTAATAAGTAAAGATT‑GCTGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 2:849896/1‑143 (MQ=37) gAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAg < 1:793853/143‑1 (MQ=255) aaaGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCCGa > 1:570905/1‑143 (MQ=255) aaaGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGGGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 2:921054/1‑143 (MQ=255) aGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCGGACa > 2:3351/1‑143 (MQ=255) tGGCTTATGAGCGTGAAGTGCTGGGCAAATTTCATAAATCTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCa < 1:351971/143‑1 (MQ=255) atcccgacgAGCTTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGGCTACGCCAGACAGCGCa > 1:881179/9‑143 (MQ=255) ttATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCCGGCCCACGCCAGACAGCGCCATAg > 2:168073/1‑143 (MQ=255) ttATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAg > 1:585520/1‑143 (MQ=255) ttATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTCATCAGGCCTACGCCAGACAGCGCAATAg > 2:553812/1‑143 (MQ=255) gAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCATGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg > 1:334181/1‑143 (MQ=255) gTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAttt < 1:750722/143‑1 (MQ=255) aGTGCGGGGGAAATTTGATAAAACTGCGGATGAATAATTGAAGATT‑GCCGGGGATATCCCCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg < 2:584615/143‑1 (MQ=255) ggCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTCTCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:536145/1‑143 (MQ=255) cAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt < 1:253026/143‑1 (MQ=255) cAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGCGCTTTTGt > 1:834850/1‑143 (MQ=255) cAAATTGGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt < 1:920636/143‑1 (MQ=255) aaaGTTGATAAAACTGCGGATCAAGAATTGAAGATTGGCAGGGGATATCCACCCGGCAAGGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt < 2:1140291/143‑1 (MQ=21) tttGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt > 1:824214/1‑143 (MQ=255) ttGACAAAACGGCGGATCGATAAATGAAGAGT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGGCGCGTGCCGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc < 1:46352/143‑1 (MQ=21) aTAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa > 2:715420/1‑143 (MQ=255) aaaCTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCgggtct > 1:615356/1‑139 (MQ=255) aaCTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg > 1:1038273/1‑143 (MQ=255) accgCGGATCAATAAGTGACGATG‑GCCGGGGATGTCCCCCCGGCAATGTGTGAATGCCTGCTGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGGTAAgg < 2:996026/140‑1 (MQ=18) aCTTCGGATTAATAATTTAAGATT‑TCCGGAGAAAGCCAACCGGCAAGGAGAGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg < 1:131385/143‑1 (MQ=17) cTGCGGATCAATAATTGAATATT‑GCCGGGGATACCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGc < 1:564523/143‑1 (MQ=255) ggATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGATAAGGCGttt > 1:777287/1‑143 (MQ=255) gagcAATAATTGACGATT‑GGCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTAGCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTa < 2:403590/140‑1 (MQ=255) tCAGTAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg < 2:688242/143‑1 (MQ=255) tCAATGATTGAAGACG‑GGCGGGGATCTCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTGATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg < 2:207833/143‑1 (MQ=17) gaatcatTGGAGATT‑GCCGGGGACATCCGCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc < 2:368012/142‑1 (MQ=255) ataatTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg > 1:722278/1‑143 (MQ=255) ataatTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCAAGACAGCGCAATAGCCTGTTTGAGCGAGCTTTTGTAGGTCGGATAAGGCGTGTCTGCCg > 2:525997/1‑143 (MQ=21) agaatTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg > 1:1078774/3‑143 (MQ=255) tGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGGTTTAGCGGGGTTTTGTAGGTCGGATAAGCCGGTTAAGCCGCAttc > 2:398843/1‑141 (MQ=18) gctt‑GCCGGGGATGTTCTCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGTGTGTTTTTTTGTCCCCCATAAGGCGTTTATGCCGCATCCGACa < 2:369530/141‑1 (MQ=17) gATG‑GCGGGGGATATCCTCCCGGTGGTATTTCAATGCCTGATGCGACGTTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACa < 1:1067080/143‑1 (MQ=11) aTT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGt < 2:344483/57‑1 (MQ=255) aTT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGt > 1:344483/1‑57 (MQ=255) gCCGGGGATAGCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCaa < 2:92357/143‑1 (MQ=255) ccGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCgcgctcacc > 1:34081/1‑135 (MQ=255) ggggATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCGACGc > 1:521967/1‑143 (MQ=255) ttccgttcGGCAATGTGAGAAGGCCGTATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGCAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATg < 1:470456/136‑1 (MQ=11) atCTACACGGAAATGTGTGAATGTCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGGCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATg < 1:43425/143‑1 (MQ=14) atCGACCAGGCAATGGTTGAATGCCGGATGCGACGCTTGCCGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAGTTAGCGTGATTTTGTAGGTCGGATAAGGTGTTTATGCCGCATCCGACATCAACGCCTGATg < 2:629142/143‑1 (MQ=11) aCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAc < 1:379524/143‑1 (MQ=255) cccGGCAATGTGTGAATGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg < 1:981947/143‑1 (MQ=255) aaTGTGTGACTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCTACATCAACGCCTGATGCGACGCTTAAc < 2:228931/143‑1 (MQ=25) aaTGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGGCGCTTagc > 1:165700/1‑141 (MQ=255) gtgCATGCTTGATCCGCCGCTTGCTGCGCCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGATAAGGCGTTTATGCCGCCTCCGCCATCACCGCCTGATGCGACGCTTAACGCGTc < 2:232189/143‑1 (MQ=11) gtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTc > 2:700566/1‑143 (MQ=34) aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa > 2:169304/1‑66 (MQ=35) | TGGGAACACAAATTTGACCGTAAGAAAGCGCTGGCTTATGAGCGTGAAGTGCTGGGCAAATTTGATAAAACTGCGGATCAATAATTGAAGATT‑GCCGGGGATATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC > NC_000913/4295710‑4295970 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |