New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288917 =	NA (NA)	92 (1.380)	62/284	0.0	98.9%	intergenic (‑5/+146)	yejO/insH1	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator
	?	NC_000913	= 4049893	1 (0.020)					intergenic (+142/‑5)	polA/spf	5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2288776‑2289054                                                                                                                                              |                                                                                                                                          ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagg                                                                                                                                          >  1:97276/1‑143 (MQ=255) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATAGCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGCTGCCACTGCGCTGGGTGAATATaagg                                                                                                                                          >  2:203781/1‑143 (MQ=255)  tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga                                                                                                                                         >  2:781366/1‑143 (MQ=255)  tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCGTTTTCCAGGACAACACCATCACCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga                                                                                                                                         <  2:387859/143‑1 (MQ=255)          cTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCCTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCCAATGCTCTGGGCGACTACacggacgggccga                                                                                                                                 >  1:602245/1‑138 (MQ=255)            gTTCTCCGCCAGGAATGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCCATGGGTGAATATGAGGAAGGTGCGAAt                                                                                                                               >  2:345693/1‑143 (MQ=255)                  ctcccggATTGATTTTCGTATTATTGGCGGTCCCATACACCAGCTGGATATCGTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                         <  2:713120/138‑1 (MQ=255)                     cAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATACGGAAGGAGCGAATAAGGCGGGa                                                                                                                      >  1:1018026/1‑143 (MQ=255)                         attagttttCGTCTTGTTGGCGGTCACATAAACCGTCTTTATATCTTTTTCCAGGACAACGCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                  <  1:1157964/138‑1 (MQ=255)                         agtggtttgCGTATTATCGGCGGTCCCATAAACCAGCTGGGTATCTGTTTCCAGGACAACACCATCAACGGGCGGAACATACGCAACAGTTGATGCCAAGGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                  <  1:938713/138‑1 (MQ=255)                           tgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                                <  2:332492/143‑1 (MQ=255)                             attTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAATAGGGTAAAttcttc                                                                                                              >  2:716131/1‑143 (MQ=255)                              ttttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCCCATGCTATGGGTGAATATAAGCAAAATCCGAATAAGCGGGGAAATtcttct                                                                                                             >  2:133969/1‑143 (MQ=255)                              ttttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                                                             >  2:984532/1‑143 (MQ=255)                                ttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACACAACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAACGCAGGTGCGACTAAGCGGGGAAATTGTtctct                                                                                                           >  1:483480/1‑142 (MQ=255)                                    tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGACGGTGCGAATACACGGGGCAATTCTTCTCGGATg                                                                                                       >  2:526851/1‑143 (MQ=255)                                    tattatTGGCGGTACCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAGGGGTGCATATAGGGGAGGTGCGTCTCAGCGGGGACATTCTTCACGGCTg                                                                                                       >  2:414728/1‑143 (MQ=255)                                       tattGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCAACATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACt                                                                                                    <  1:264625/143‑1 (MQ=255)                                         ttGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGACGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                  >  1:443559/1‑143 (MQ=255)                                           ggCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                <  2:550405/143‑1 (MQ=255)                                              ggTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                             >  2:913771/1‑143 (MQ=255)                                              ggTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTCGATGCCAATGCTATGGGTGAATATCAGGAAGGCGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                             <  1:635164/143‑1 (MQ=255)                                                   cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                        >  1:283859/1‑143 (MQ=255)                                                     tAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCGGtcatttcatgt                                                                                      >  1:793414/1‑141 (MQ=255)                                                       aaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTGATTTCATttct                                                                                    >  2:960477/1‑143 (MQ=255)                                                          ctgCTGGATCTCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                                                                 <  1:891185/141‑1 (MQ=255)                                                          ccgCTGGATATCTCTGCCCCGGACCACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                                                                 <  2:708884/141‑1 (MQ=25)                                                           aGCTGGATATCTTTTTCCAGGACAACGCCATCAACTGTCTCACCATAGTTTTCAGTTGATGCCAATGCTATGGGCGAATATAAGGAAGGTGCGAATAGGCAGGGAAGTTCTTATCGGCTGACTCACTCTTTGCATTTCTGCAt                                                                                >  1:314361/1‑143 (MQ=255)                                                             cTGGATATCGGTTGCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGAGGCCAATGATGTTAATTAATATGAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                              <  1:409725/143‑1 (MQ=21)                                                                 atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGATTATAAGGACGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  2:353718/143‑1 (MQ=255)                                                                      tttttCCAGGACAACACCATCAACTGTCTCACCATACTCGACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                     >  2:1135000/1‑143 (MQ=255)                                                                      tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGCATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCAGCTGACTCAGTCATTTCATTGCTTCATGTTTGAGCCGa                                                                     >  1:999756/1‑143 (MQ=255)                                                                      tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                     >  1:835158/1‑143 (MQ=255)                                                                       ttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCggt                                                                    >  2:323611/1‑141 (MQ=255)                                                                        tttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTACGGGCGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATGTCTTAACGTTCGAGCCGAtt                                                                   >  1:961236/1‑143 (MQ=25)                                                                           ccAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                                <  1:913771/143‑1 (MQ=255)                                                                             aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGGGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTGCATGTTTGAGCCGATTTGTtc                                                              >  1:542732/1‑143 (MQ=255)                                                                              ggACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                             <  2:176414/143‑1 (MQ=255)                                                                              ggACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                             <  2:960896/143‑1 (MQ=255)                                                                               gACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTCACTAATTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                                                            <  2:491738/143‑1 (MQ=255)                                                                                 caacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                          <  2:97276/143‑1 (MQ=255)                                                                                  aacaCCATCATCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg                                                         <  2:1017481/143‑1 (MQ=255)                                                                                  aacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGACATTTCATTTCTTCATGATTTAGACGAtatattattcca                                                         >  2:649128/1‑132 (MQ=25)                                                                                    cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATTCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa                                                       >  1:1010517/1‑143 (MQ=255)                                                                                     acCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                      >  2:933272/1‑143 (MQ=255)                                                                                      ccctCAACTGTCTCACCATACTGAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                     <  1:975135/140‑1 (MQ=255)                                                                                      ccATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGCGCCGATTTTTTCTCCCGTcaa                                                     <  2:709882/143‑1 (MQ=255)                                                                                       cATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCAGTGCATGTCATCATGTGGGAGCGGATTTTTtctcgattaaac                                                    >  2:300259/1‑135 (MQ=21)                                                                                        aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg                                                   >  2:139526/1‑143 (MQ=255)                                                                                         tCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                                  >  2:1130041/1‑143 (MQ=255)                                                                                            acgtgctcACCATCCTCCACCGTTGATGCCAATGCTAGGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATCCTTCTCGGCGGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                               <  2:483480/138‑1 (MQ=17)                                                                                            acggTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                               <  2:1075145/140‑1 (MQ=255)                                                                                            aCTGTCTCGCCGTTGTCAGCGGTTGATGCCAAGGCTGTGGGTTGATATGAGGAGTGTGCGAAGAACCGCGGCAATTCTTCTTGGCTGTCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                               <  1:1068573/143‑1 (MQ=9)                                                                                                   cACCATACTCTACAGTTGATGCCATTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                        <  2:1137105/143‑1 (MQ=255)                                                                                                    aCCATCCTCAACAGTTGATGCCAATGCCATGTGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                       <  2:583981/143‑1 (MQ=255)                                                                                                    aCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTCTATTTCTTCATGTTTGAGCCGACTCTTTCTCCCGTAAATGCCTTGAATCAGc                                       >  1:1002040/1‑143 (MQ=255)                                                                                                    aCCATACTCAACAGTTGATGCCAATGCGATGGGTGAATAGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                       <  2:720067/143‑1 (MQ=255)                                                                                                     ccATACTCAACAGTTGATGCCAATGTGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAGTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc                                      <  1:203781/143‑1 (MQ=255)                                                                                                     ccATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc                                      >  1:917437/1‑143 (MQ=255)                                                                                                           tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                >  2:629803/1‑143 (MQ=255)                                                                                                           tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAACCTATTTa                                >  2:60576/1‑143 (MQ=255)                                                                                                                     aTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGACTATTTAGACCGTttct                      >  2:126003/1‑143 (MQ=255)                                                                                                                      tgccaatgggtggggTTAAGATAAGGGACGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTGCAGTTCTTCATGTTGGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                     <  1:269021/131‑1 (MQ=11)                                                                                                                      tGCCAGTGCTGTGGTTGATTATAAGGAAGGTGCGAATTAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                     <  1:461002/143‑1 (MQ=11)                                                                                                                      tGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                     <  2:443559/143‑1 (MQ=255)                                                                                                                       gCCAATGCTCTGGGTGAATATAAGGAAGGTGCGAATAAGCAGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTGCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGTATCAGCCTATTTAGACCGTttcttc                    <  1:664402/143‑1 (MQ=255)                                                                                                                       ctcattgttATGGGTGAATTTGTGGAAGGTTCTATTAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                    <  1:561680/135‑1 (MQ=11)                                                                                                                         cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCGTGGTTGAGCCGAATTTTTCTCCCGTAAATGCCTTGAATCAGCATATGTAGAGCGcttgatacc                  >  2:183400/1‑137 (MQ=14)                                                                                                                         cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCCGCTGGCGCTGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGCCCGTTTCTTCGc                  >  2:789794/1‑143 (MQ=14)                                                                                                                         cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTATAGGCTGATTCAGGCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                  >  2:789928/1‑143 (MQ=255)                                                                                                                               tATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTTTTTTGTCTGCTTCCACGCCATTTa            >  2:716447/1‑143 (MQ=14)                                                                                                                                 tGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAATAAGCCTGTTGAGACCGTTTCGTCGCCCttcacg          >  2:710237/1‑139 (MQ=11)                                                                                                                                 tGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg          >  1:580178/1‑143 (MQ=38)                                                                                                                                       aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCTCATTTAGACCGTTTCTGCGCGAGGTAAGGCGTTa    >  2:351788/1‑143 (MQ=11)                                                                                                                                         tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc  <  1:740394/143‑1 (MQ=31)                                                                                                                                         tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTATTCGCCATTTAAGGCGTTATc  >  2:477058/1‑143 (MQ=14)                                                                                                                                              |                                                                                                                                          TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2288776‑2289054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.