New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	2 (0.030)	68 (1.020)	57/284	0.1	97.1%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

CACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2101611‑2101886                                                                                                                                           |                                                                                                                                           cacaGTACATAAAGTAACCTTGATCGAAGCCATTTACACACACAATAACTTAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaag                                                                                                                                        <  1:399354/143‑1 (MQ=255)       aCATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGa                                                                                                                                  <  1:904020/143‑1 (MQ=255)         aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAAt                                                                                                                                <  2:990151/143‑1 (MQ=255)         aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAAt                                                                                                                                >  2:1045455/1‑143 (MQ=255)           aaaGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGCTACTTTCCCTAGGAATTTTTATTCTACTAACGAAGGTGAGAATaa                                                                                                                              >  2:193113/1‑143 (MQ=255)              gTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCg                                                                                                                           <  2:557060/143‑1 (MQ=255)               tAAGCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  2:578589/143‑1 (MQ=255)                   cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaa                                                                                                                      >  2:1145306/1‑143 (MQ=255)                      gATCGACGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                   <  1:759755/143‑1 (MQ=255)                              ccATTTACACGCACAAATTCTGAAAAACGTACCAACATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGTAAGGTGCGAATAAGCGTGGAAATTCTTCTCgg                                                                                                           <  1:322893/143‑1 (MQ=255)                              ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTGAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                           >  1:970636/1‑143 (MQ=255)                              ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                           <  2:752899/143‑1 (MQ=255)                              ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                           >  2:1090862/1‑143 (MQ=255)                                aTTTACACTCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                         <  1:904167/143‑1 (MQ=255)                                    acacGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTCTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGACATTCTTCCCGGCTG‑ACt                                                                                                    >  2:107754/1‑143 (MQ=255)                                       ctcacaAAGTCTGAAAATCGTAGCAGCATAAATGATCCTGCGCTCCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAg                                                                                                 <  1:1007951/141‑1 (MQ=255)                                        gCACAAAATCTGAAAAACGTAACAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTGCTTTAGGAATTTTTATTTTATTAAGTAAGGGGAGAATATGCGGGCAGAGCGTTCTCGACTG‑ACTGAGt                                                                                                >  1:401505/1‑143 (MQ=255)                                            aaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGtcatt                                                                                            <  1:1089863/143‑1 (MQ=255)                                            aaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGtcatt                                                                                            >  2:90936/1‑143 (MQ=255)                                                   gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCatttcatttc                                                                                     >  1:932763/1‑143 (MQ=255)                                                       aaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCa                                                                                 >  2:675606/1‑143 (MQ=255)                                                           tACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGtt                                                                             >  1:1100881/1‑143 (MQ=255)                                                           tACCAGCATAAATGATCCTGCGCACCAATCAACAACCATATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGtt                                                                             <  1:805485/143‑1 (MQ=255)                                                              catcATAAATGATCCTGCGCACCAATCAACACTTGTATCAGAAGAGATACTTTCTTTAGGAATTTTTGTTTTATGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  1:31326/140‑1 (MQ=25)                                                              cAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  2:422734/143‑1 (MQ=255)                                                                ggatgaatgcatcTGCGCAGCTATTAACAGTTGTATCGGGATGGTTATTTTGTTTGGGGGTTTTTGTTTTGTTGAGGAAGGTGCGAATAAGCGGGGTTGTTGTTGTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                        <  1:21979/131‑1 (MQ=9)                                                                gCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGACTAGATACTTTCTCTAGGAATTCCTGCTTCATCAAGGCAGGTGCGAATAACCGGGGAAATTCTTCTCGGCTG‑ACCCCGTCACCTCACTTCTTCCTCTTCGAGc                                                                        >  1:559235/1‑143 (MQ=21)                                                                  aTAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAACAGAGGGAATGCTTTTGGGCTGCACTGA‑TGTGGGCAGTTCTTCATGTTTGAGCCg                                                                      >  2:722236/1‑143 (MQ=255)                                                                    aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                    >  1:817404/1‑143 (MQ=255)                                                                     aaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCCTTTATTCATGTTCGGGCCGagt                                                                   >  2:951143/1‑141 (MQ=255)                                                                             tGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                                                           >  1:43355/1‑143 (MQ=255)                                                                             tGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑AATTGACGAGATCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                                                           >  1:814671/1‑143 (MQ=25)                                                                                 cACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa                                                       >  2:1014339/1‑143 (MQ=255)                                                                                 cACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa                                                       >  2:948457/1‑143 (MQ=255)                                                                                 cACCAATCAACAACCGTATCAGAATAGATACTATACTAGCCCCATGTTGTTGTATTAAGGAAGGTGCGGATAAGCGGGGGAATTCTTCTCAGCTC‑CATCAGTCAGTTCGTTGATTTATGTTTTAGCTGAttttttattctgta                                                       >  1:825417/1‑135 (MQ=255)                                                                                  aCCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                      >  2:340333/1‑143 (MQ=255)                                                                                     aaTCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg                                                   >  2:983482/1‑143 (MQ=255)                                                                                     aaTCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑AATTCATCATTTCATTTCTTCATGTTTGAGCCGTTTTTTTCCTCCGTAACTg                                                   >  1:294287/1‑143 (MQ=21)                                                                                        ccacaacCGTATCAGAATAGATACTTTCTTGAGGAATTTTTGTTTTAGTAACGAAAGAGAAAGAGGGCGGTGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt                                                <  2:158728/141‑1 (MQ=17)                                                                                        caacaaCCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt                                                <  2:932763/143‑1 (MQ=255)                                                                                         aacgacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                               <  2:281188/143‑1 (MQ=255)                                                                                          actacCGTATCACAACAGATACTGTCCTTAGGAATCTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAATTTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg                                              <  2:231494/140‑1 (MQ=17)                                                                                          acaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg                                              >  2:123181/1‑143 (MQ=255)                                                                                             acCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                           <  1:1045455/143‑1 (MQ=255)                                                                                                     aGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt                                   >  2:586495/1‑143 (MQ=255)                                                                                                     aGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt                                   >  1:793488/1‑143 (MQ=255)                                                                                                      gAACAGAGACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCTGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                  <  1:246964/143‑1 (MQ=255)                                                                                                        aTAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTCCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                <  2:543127/143‑1 (MQ=255)                                                                                                                    tttAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                    <  1:770719/143‑1 (MQ=255)                                                                                                                    tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑CCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCGATTTAGACCGTttcttc                    >  2:751599/1‑143 (MQ=255)                                                                                                                              tttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg          <  2:1100881/143‑1 (MQ=38)                                                                                                                               ttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg         <  1:1099766/143‑1 (MQ=37)                                                                                                                                   tttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGtt     >  1:979555/1‑143 (MQ=33)                                                                                                                                    ttattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTa    <  1:90936/143‑1 (MQ=32)                                                                                                                                      attaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCGTTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGCCCGTTTCTTCGCCATTTAAGGCGTTATc  >  1:829893/1‑143 (MQ=14)                                                                                                                                           |                                                                                                                                           CACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG‑ACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2101611‑2101886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.