New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423374 =	85 (1.280)	8 (0.120)	6/280	8.5	14.7%	intergenic (+182/+47)	yhdZ/rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
	?	NC_000913	= 3946821	9 (0.140)					intergenic (+3/‑50)	rrfC/aspT	5S ribosomal RNA of rrnC operon/tRNA‑Asp
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGG  >  NC_000913/3946682‑3946960                                                                                                                                            |                                                                                                                                            tCTGATGAAACAGACTTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAtt                                                                                                                                          <  2:642322/143‑1 (MQ=17)    gatgaGACAGAATTTGGGTGGCGGCCGGAGCGCGGTGGTGCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg                                                                                                                                       <  1:862212/143‑1 (MQ=11)    cacgaAACAGAATCTGCCAGGCGGCCGGAGCGCGGTGGTCCCACCCGACCCCATGCCGAACTGAGCTGTCTTACTGCGTAGCGCCGAGGGTAGTGTGTGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg                                                                                                                                       <  1:409381/140‑1 (MQ=11)       gaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCAGGCCGAACTCAGAAGTGAAAGGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGGAAGGAACTGCCAGGCACCAGATTAAGCAg                                                                                                                                    >  1:537543/1‑143 (MQ=11)                                                                                                                                  ccAGGCATCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTaa         >  2:427270/1‑143 (MQ=33)                                                                                                                                        aTCAAACTAAGCAGTAAGCCGGTCACAAGACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCGGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAggg   <  2:237663/143‑1 (MQ=255)                                                                                                                                         tCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCGCCCTAATTAgggg  >  2:451314/1‑143 (MQ=38)                                                                                                                                         tCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAgggg  >  2:673832/1‑143 (MQ=39)                                                                                                                                         tCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTAGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGGGGGTTCGAGTGCCGTCCGTTCCGCACGCCTAAGTAgcgg  >  1:790097/1‑143 (MQ=1)                                                                                                                                            |                                                                                                                                            TCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGG  >  NC_000913/3946682‑3946960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.