New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620867NA (NA)3 (0.030) 3/408 NT 3.8% coding (1677/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor
?NC_000913 = 3621007 80 (0.800)coding (1817/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor

GCCACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGG  >  NC_000913/3620760‑3621096
                                                                                                           |                                                                                                                                                                                                                                     
gCCCCCGGAGGCCTGAAAACCATGGAGTGGAGCCGTTACGGTCAGTGGCTGAGCTTCACCGACTGTTCCGGTTATTTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGTTATGAATACAACATCGCCGGTGACCTGA                                                                                                     >  2:136917‑M2/1‑238 (MQ=255)
gCCACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGA                                                                                                     <  1:416756‑M2/238‑1 (MQ=255)
  cACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGCGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACAATGACCGCTTCGGGCAGATGAAGGCGGTGCACCGCGCGGGAGAGCTGAGTCAGTACCGCGCATACGACAGCCCCGGACAGCTAATAGCCGTGACAGACACGCAGGGCCATGACGCGCGATATGAATACAACATCGCCGGGGACCAGACC                                                                                                   <  2:378611‑M2/238‑1 (MQ=255)
  cACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGAGGTGCACCGCGAGGAAGGGCTGAGTCCGTACCGCGCATACTGCAGCCGGGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGACACGCGGTATGAAAACAACATCGCCGGTAGCCTGACC                                                                                                   <  2:427420‑M2/238‑1 (MQ=255)
   aCCGGCAGCCGGAAACCCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGC                                                                                                 >  1:1151315‑M2/1‑239 (MQ=255)
   aCCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGC                                                                                                 >  1:598888‑M2/1‑239 (MQ=255)
    ccGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGATTAAAACATCGCCGGAGACCTGAACGCC                                                                                                <  2:970495‑M2/239‑1 (MQ=255)
         aGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCA                                                                                            >  1:104988‑M2/1‑238 (MQ=255)
                         cGTGGAGCCTGTGCGGTCAGTTTCTGAGCTCCACCGTCGGGTCCGGTTTGGTAACCCGTTATGACCATGGCCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATctgcccgaagcggtc                                                                            >  2:799492‑M2/1‑223 (MQ=255)
                                           aGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCA                                                                                            >  1:212920‑M2/1‑204 (MQ=255)
                                           aGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCA                                                                                            <  2:212920‑M2/204‑1 (MQ=255)
                                                                                     gtgccctgcgcggactCGCGCAGATGACGGCGGTGAACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCTAGGACAGTTAATTGCCGTGAAAGACACGCAGGGCAATGAAACCCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTg               <  2:178327/224‑1 (MQ=11)
                                                                                       gaccatgaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAc             <  1:376637/239‑1 (MQ=31)
                                                                                        accatgaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAc             >  1:939308/1‑238 (MQ=31)
                                                                                          catggccGCTTCGGGCAGATGCGCGCGGGGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAcgcg          <  2:368538/239‑1 (MQ=9)
                                                                                          catgcccGATTCGGGCAGATGACGGAGGTGACCCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTAGGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAcgcg          <  2:301589/239‑1 (MQ=9)
                                                                                          cagggccGCGTCGGCGAGATGCCGGCGGGGCCCCGGAAGGAAGGGCTGAGTAAGAACCGCGAATACGACGGCTGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGCCCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAcgcg          <  2:108267/234‑1 (MQ=11)
                                                                                           atgaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCCGCAGAAACGGGACACAGTACGATGCGTGGGGACAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc         >  1:11095/1‑239 (MQ=14)
                                                                                             gaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg       >  1:675146/1‑239 (MQ=31)
                                                                                             gaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg       >  1:186194/1‑239 (MQ=31)
                                                                                             gaccGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg       >  2:834267/1‑239 (MQ=31)
                                                                                              gccggtgcGGGCAGATGACGGCGGAGCACAGGTACGAAGGGCTGGGTCAGTACCGCGCATACGACAGCCGTGTACAGTTATTTGCCGTGAAAGACAAGCAGGGCCATGAACCGCGGTAGGAATGCAACATCGCCGGTGCCCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGGACCACGCAGGGCGGGCTGACGCGCa        <  2:705536/230‑1 (MQ=11)
                                                                                               ccGCTTCGGGCAGATGACGGCGGTGCGCCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATGGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGACCGTACCACGCAGGGCGGGCTGACGCGCAGt      <  1:1095045/238‑1 (MQ=14)
                                                                                               ccGCGTCGGGCAGATGACGGCGGGCCACCGCGAGGAAGGGCTGAGGCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTa     <  2:785102/239‑1 (MQ=9)
                                                                                               ccGCCTCGCGCAGAAGGCGGCGGTGCGCCGCGGGGAAGGGCTGAGGCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTa     <  2:984231/239‑1 (MQ=255)
                                                                                                  cTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATTCGTGGGGAAAGGCCGTCCGTAACACACAGGGCGGGCCGGCGCGCAGTATgg  >  2:1127690/1‑239 (MQ=9)
                                                                                                  cTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGCTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGAACTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGAGCCGTGGGGAAAGGCCGTCCGCGCCCCGCAGGGCGGGCCGACGCGCAGCATgg  >  2:821666/1‑239 (MQ=11)
                                                                                                           |                                                                                                                                                                                                                                     
GCCACCGGCAGCCGGAAAACCATGACGTGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGG  >  NC_000913/3620760‑3621096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.