| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,708,814 | A→G | 6.8% | A632A (GCA→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,708,814 | 0 | A | G | 6.8% | 192.0 / 2.6 | 75 | A632A (GCA→GCG) | rsxC | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (33/31); new base G (2/4); total (39/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
ATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGA > NC_000913/1708576‑1709044 | aTCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGAGGAAACAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCACAAGCa > 1:500209/1‑239 (MQ=255) ccgcatAAAACTGCGGTAGAAGCAGCTATCGCACGCGCCAAAGCGCGCAAGCTGGAACAGCCACAGGCTAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 1:418798/234‑1 (MQ=255) ccACGTATACCTGCCACGAAATCAGCTATCGCCCGCTCCAAAGCGAGCACGCTGGACCAGAACCTCAGTAATGCGGAACCAACACCAGAGGTCGATCCGCGTAAAGCCGCCGTCGAAGCCGCTATCGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:661028/239‑1 (MQ=14) ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCAc > 1:1139762/1‑238 (MQ=255) ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAc > 1:661028/1‑238 (MQ=255) ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 1:681044/239‑1 (MQ=255) ccACGAAAGACTGCGGGTGAGGCAGCCAGCGACCGCGCCAACGGGGGGAAGCTGGAACAGCAACAGCCAAATGCGGACCCAGAACAACTGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:1145367/239‑1 (MQ=14) cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCaa > 1:389008/1‑239 (MQ=255) cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACCGCAACCGCATACACCGGAAACGGAGCAAAAGATGGACTCGGGCAAAACCGCCGTGGAAGCCGCAACTGCAGATGACAAAACAAGCaa > 2:308384/1‑239 (MQ=14) aaCTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTg‑g > 1:876486/1‑239 (MQ=255) ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGCCTACTGCGGCACCAAAAGAACAGGCCGATCCGCCCAAAGCCGCCGTCGCAGCGGCCATTCCCCGGCCCAAACACCGCAAGCTG‑GAGCa > 2:1054818/1‑238 (MQ=14) gtggAAGCAACTACCACCCGCCCACAAGAGCGCAAACTGGAACAGCGACAGGCTAATCCAGACGCAGAAGAACAGGTCGATCCGCGCACAGCCGCCGTTGAAGACGCTATCGCCGGCGCCAAAGCACGAAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGG‑GAACAGCa < 2:1123289/236‑1 (MQ=14) tGAAGCAGCTCGCGCCCGCGCCAAAGCGGCCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCaa < 1:368835/238‑1 (MQ=255) tGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAGACCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCaa < 1:121473/238‑1 (MQ=255) ccGCGACAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGc < 1:296259/239‑1 (MQ=255) cgcgCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCGGAGcc > 1:819908/1‑239 (MQ=255) cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAg > 1:993375/1‑239 (MQ=255) cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGG‑TCGATCCGCGCAAAg > 1:26167/1‑238 (MQ=255) cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg > 1:798518/1‑179 (MQ=255) aaaCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:798518/178‑1 (MQ=255) aaTGCGGAACCAGAACAACGGGTCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGa < 1:1148396/239‑1 (MQ=255) aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACCGGTCGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCTCAAGCCCGCAAACTG‑GAACAGCAACAGGCTGATTACGAGCCCGAAGAACCGG‑TCGAGCCGCGCAACGCCCCCGGCGCAGccaca > 2:874093/1‑236 (MQ=14) aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCTCCAAACCCCGCAAGCCG‑GACCAGCAACCGGCCAATGCCGAGCCCGACGACAAGG‑TCGATACGCGCAAAGCCGCCGTCGAAGCGGca > 2:368375/1‑238 (MQ=11) aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGACGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGaa > 1:570265/1‑200 (MQ=255) aCCCGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa < 1:157573/239‑1 (MQ=255) aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGATCCAGAAC‑ACAGGCTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTagt > 2:1093172/1‑236 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc < 1:1122394/238‑1 (MQ=255) ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCa > 1:420682/1‑239 (MQ=255) ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCGGTGCCAGAAGAACAGG‑TCGATCCGCGCAAAGCCGCCGCCGAAGCCGCTacacaccgacccg > 1:162676/1‑227 (MQ=14) acGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCAAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCa < 1:532750/236‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAATCCGCTATTGCCCGTGCAAAAGAACGCAAGCAG‑GAACAGCAACAGGCTAATGCCGAGCAAGAACAACAGG‑TCGATCCGCGCAAAg > 1:188064/1‑203 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg < 1:968480/239‑1 (MQ=255) cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGCCGACGCCAAAGCGCGCaaaa > 1:142335/1‑238 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc < 1:1093172/239‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCAATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa < 1:230102/238‑1 (MQ=255) cGCTATTGCCCATGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGAGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGc < 1:1098349/237‑1 (MQ=255) ccGGGCCAAAGCGCGCAAGCTGGAACAGAAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:320918/239‑1 (MQ=255) tGCCAAAGCGCGCAAGCTGGGACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGGAGCCGCGATTGCCCGGGCCAAAGCAC‑CAAACAGCGAACAGCAACAGGCTAATGCCGAACCCCAAAAACCGG‑TCGATCCGCGCAAAGCCGCCGGTGCAGCAGCTATTGCACGAGCCAAAGGCAGCAAGCGGGGAGAGCAACCGCCtctatcggagcccg > 2:182591/1‑226 (MQ=11) tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAACAGGACCAGCAACCGGCTAAAGCTGAGCCat > 2:1109679/1‑238 (MQ=255) cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGCCTAATGCGGAGCCagaa < 1:903124/238‑1 (MQ=255) cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCGGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag > 1:1125459/1‑239 (MQ=255) aaaGCGGGCAAGCTGGAACAGTAACAGGCTAATGCGGAACCAGAGACACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCTGAACCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:761923/239‑1 (MQ=255) cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCCGAAGAACAGGTTGATCCGCGCaact > 1:236732/1‑236 (MQ=255) aaTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGa < 1:368375/239‑1 (MQ=255) aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGAAAACGG‑GAACAGCAACAGGCTAATGCCGAGCCAGAATCACAGG‑TCGATCCGCGCAAAGCCGAAGACGAACCCGCTATTGCCGGCGCCACAGCGCCCAAAAGGGAACAGCAACCAGCCAGAGCCGAGCCAGGAGAACAGGTTGAACCGCGCCAATCTGCCggcca > 2:1095070/1‑234 (MQ=14) aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAACGCACACAAGCAG‑GCACACCAACAGGCCAATGCCGAGCAAGAACAGCAGG‑TCGATCCGGGCAAAGCCGCTGGTGAAGCAGCTCTGGCACGCGCCAAAGCGCGCACGACACAACAGCAACCGGCTCATGCTGCGACAGAACAAAACGCTCATCCGcacatcgcccgagacgcacacact > 2:33670/1‑219 (MQ=2) aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGCGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCCCGACCCAAAGCGCGCAACCCGGAACAGCAACCGGCAGATGCGGAGCCAGAAAAACAGGTCGATCCCCGCAACGAGACCCTCGAggcggcc > 2:895725/1‑238 (MQ=14) aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTACAGCCGAGGCCAAAAAACAGGTTGGTCGGCGCAACGCTGCCGttgcacccgcc > 2:900843/1‑229 (MQ=14) aagaaCGGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 1:1003544/239‑1 (MQ=255) agaagaGGTCGAGCCACGGAAAACCGCCGTGGAAGCCGCTAGTACGCGTGCCACAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 1:209239/238‑1 (MQ=17) agaaCAGGACGACCCGCGCAAAACGGCCGTCGAAGCCGCTCTTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 1:375740/238‑1 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATG‑GGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaaa > 1:65451/1‑239 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAACTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGG‑TCGATCCGAGCAAAGCGGCCGTCGAGGCGGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACCGCAAACGGCTAATACGGAGCCAGAAGAACAGGTTGATCCGAGCAAACCAGCAGTCACAACGGCAATTGCCcgcgacc > 2:775894/1‑235 (MQ=14) aTCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCGGAACCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAGCCGGCACAGCAACAGGCTAATGCAGCGCCAGAAGAACAGGGCGATCCGCGCAAACCGGCCGTCGTACCGGcgtttcgccgggcccagac > 2:467074/1‑220 (MQ=14) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa < 1:1109679/238‑1 (MQ=255) tCCGCCAAACGCCGCCGTCGAAGCCGCTATTCCCCGTGCCAGAGCACGCAAGCTG‑CAACAGCAACAGGCTAATCCGGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa < 1:357181/174‑1 (MQ=14) gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGG‑TCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCCCAAGCGCGCAAACGCGCACACCAACAGGCTACTGCGGATCCAGAAGAACCAGCGGATCCCCGCAAAGCTGCCGGCGAAGCGGCTATTGCCCCCGCCAAAGCCCgaa > 2:980046/1‑237 (MQ=14) gcgaAAAGCCGCCGTGGAAGCAGGTATTGCCCGTGCCAAAGCGCGCAAGCTG‑GAACAGCAGCAGGCGAATGGTGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg < 1:308384/237‑1 (MQ=17) cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:310443/44‑1 (MQ=38) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAg > 1:477571/1‑239 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCACAGCCAGCaa > 1:958329/1‑238 (MQ=255) aGCCGCCGTCGAAGCCGCTATGGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:1054818/239‑1 (MQ=255) cgcagTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTGATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAAc < 1:42409/239‑1 (MQ=255) ccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa > 1:580248/1‑238 (MQ=255) gTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:22875/239‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt < 1:463422/238‑1 (MQ=255) gCTATTGCCAGTCAAAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa < 1:329285/239‑1 (MQ=255) tATTGACCGTGCCAAAGCCAGCAAACTG‑GAACAGCCACAGGCAAATACCGAAACAGAACACCAGG‑ACGATCCGCGCAAATCCGCCGTTGAAGCCGCTATTGACCGAGCCAAAGCGCGCAAACGGGAACAGCAACTGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:963742/239‑1 (MQ=14) ccGTGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:1149463/239‑1 (MQ=255) cGTGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCAAGCACGCAACCTGGCACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATACGCGCAAAGCCGCCGACGACCCCGACCTGCCCCGCGCCTACGCCCGCAAGCTGGagccgccacgcgcagacacgcaag > 2:1137714/1‑215 (MQ=11) tGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGCGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGCCGAAGCGGCTATTGCGCGCGCTCACACACACAACCCTCAACAGCAACCAGCTaaatctgtcacac > 2:971187/1‑228 (MQ=14) tGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCATCGGCTATTGCACGCGCCAAAGCCTGCAAGCTGGCACCGCAATAGGcactagaggtctcat > 2:604478/1‑225 (MQ=17) cgCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGCACAGCAACCGGCTAACGCGGAGCCAGAAGAACAGGGTGATCCGCGCAAAGCAGCAGTCGCCGCGGCTATTCCCCGCGACAAGGCCCGAAAACTGGCCCAGACACAGTATAATGAGGCACCac > 2:111777/2‑238 (MQ=14) gCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga > 1:75369/1‑239 (MQ=255) aGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:954066/104‑1 (MQ=255) aGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa > 2:954066/1‑104 (MQ=255) | ATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGA > NC_000913/1708576‑1709044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |