| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,312,115 | A→C | 18.0% | G211G (GGT→GGG) | ompC ← | outer membrane porin protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,312,115 | 0 | A | C | 18.0% | 125.8 / 4.4 | 54 | G211G (GGT→GGG) | ompC | outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base A (35/7); new base C (2/9); total (37/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.04e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCAC > NC_000913/2311885‑2312353 | aaCTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTa > 1:296496/1‑239 (MQ=255) aCTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATa < 1:713842/238‑1 (MQ=255) aCTGAGCAACAGCTGCGAAGTTTTGGGGTTTGTACGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATa < 2:13954/238‑1 (MQ=255) aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGa > 1:110990/1‑239 (MQ=255) aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGCTCGCCGTTAACGAAGTAAGCAGCGCAGGTCTGAGCATCAGTACGTTTGTAGCTGGAG‑ATCGCACCAACGATACCGAAACCTT‑ATTAATCATAAGTGa > 2:756692/1‑239 (MQ=255) cAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATa > 1:714831/1‑239 (MQ=255) cAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATa > 1:267185/1‑239 (MQ=255) cTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAAcc > 1:149714/1‑238 (MQ=255) gcgttGTCCGCCAAACCCAGGGAACGTACGCGAGTTGGGTTGTAGGTCG‑GGGTGTACTGAGCA‑CCCAGGTAGATTTTGTTAGCGTCGTATTTCAGACCCCCAGTGTGGTTTTCAGCCCGGTCGCCGTTACCGATGTAAGCAGCGGTTTTCTGAGCATCAGTACGTTGGGAGCTGGAG‑ATCGCCCCCCCGATACCGAACCCTT‑CGTAATCATAAGGGATAGAACCGCCGAcgccgtcgc < 2:714831/235‑1 (MQ=255) ttCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCAACGATACCGAACCCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTg > 2:636593/1‑239 (MQ=255) cTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCg > 1:291005/1‑239 (MQ=255) gcgcggtttGCGTGGTGGGTGT‑GGGTTTAC‑GAGGACGCCAGTTATATGTTTGTAGGTGCGTATTTGGGCCCACCAGTGTGGGTTTCCTCGCGGTCGCCTTTCCCGGTTTAAGCAGCGGTTTTCTGAGCATCTGTACTTTTGGAGCGGGAA‑TCCCCCCCACCGATCCCAAACCTTT‑CGTAATCATAAGTAATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCgtt < 2:1092051/232‑1 (MQ=255) ttGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAACCCTT‑CGTCATCATAAGAGATAGAACCGCCGACGCCGTCGCAGTTTGGACGAAGTGCGTCACGACCGATgttagtt > 2:74571/1‑239 (MQ=255) ttGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTgttagtt > 1:217293/1‑239 (MQ=255) tgaGGTCTGGGGTGTACGGACAA‑GCCAGGTCGATGTTGTGAGTGTCGTATTGCAGACCACCATGGTATTTATCAGCACGGTCGCCGTTACGGTTGAAAGCGGCGGTGTCCTGGCCAGAAGTACGTTGGGGGCTGAAG‑ATCCCCCCACCGTTACCAAAACCTA‑CGTAATCATAAGTGATACATCCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGccc < 2:955696/237‑2 (MQ=255) cT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCAGCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAACAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTaa > 1:127182/1‑239 (MQ=255) cT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGGCAGTTGTTAGTTACGCCACTAGTaa > 1:1062306/1‑239 (MQ=255) ggTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCGGGGTCGCCGTTACCGATGTAAGCAGCGGGGTTCTGAGCATCAGTACGTTTTGAGATGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATACGTGAGAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGAGCGTCACAACCGTTGTTAGTGACGCCACTAGTaaac > 2:783708/1‑237 (MQ=255) tgtACTGAGCA‑GCCAGGAAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGATCTCAGCAGGGGCCGCGTTACCGATGTAAGCAGCGGTGTTCTGCGCATCAGTAAGTTTGGAGCTGGAG‑ATCGCACCACCGAGACCGAAACCTT‑CGTAATCATAAGGGATAGAACCGCCGACGCCGTCGCCGTTTCGACGCAGTGCGTAACGACCGTTgttagcaagtccactcgacaagcat > 2:74915/1‑219 (MQ=255) gagttgttgtTGGCTTCGTCTTTCAGCCCACCAGTGTGTGTTTCAGCACGTTCGCCGTTCCCGATGTACGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCCCCGATACCGAAACCTT‑CATAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGc < 2:267185/234‑1 (MQ=255) gttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTa > 1:107202/1‑238 (MQ=255) ttAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACTGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCAGTTTTTAc > 1:786468/1‑238 (MQ=255) tggttggttttttgaaccgaccaGTTTGGGTTTGAGCACGGTGGCTGTGCCCGTTGTACGCAGGGGTTTTCTTGGCCTGAGTACGTTTGGGTTGGGAT‑GCCCCCCCCCCGATCCGGAACCCTG‑CGTAATCATAGGTGAGAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTAccc < 2:149714/220‑1 (MQ=255) tggcgttgtattttgcgcccccaGTGTAGGTTTCAGGCCGGTCGCCTGTTCCTATGTAAGCCGGGGGTTTATGAGCATTAGGTCGTTTGGGAGTGGAGAACCCCCCCCCCGAT‑CCAAAACCTTCCGTAA‑CACAAGTGATGGAACCGCCGAAGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTAccc < 1:439332/219‑1 (MQ=255) gagggaggtATTTCAGACCCGTGGTGTAGTTTGCAGGAGGGGCGCCGTTACGTAGATAAGCAGAGGTTTTCTGCGCATCAGCACGTTTGGAGTGGGAG‑ACCGCACCACCGATCCCGAACCTTG‑CTTAATCAAAAGGTAAAGATCCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTAccc < 2:358074/232‑1 (MQ=255) gggcttgtATTCAAGCCCACCAGTGTGGGTTGCAGCAGGGTCGCGGTACGCGATGTAAGCGGCGGTGTTCTGAGCATCAGTACTTTGGGAGCGGGAG‑ACCGCCCCACCGATACCGAAACCTT‑CGAAATCAAAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTAccc < 2:217293/232‑1 (MQ=255) ttgcacaccaccAGTGTGGTTTTCCGCAGGGCGGCGGTTACGGATGTAAGCGGGGGTGTTCTGAGCATCATTAGTTTTGGAGCTGGAT‑ACCGCACCCCCGATACCGAATCTTC‑CGTAATCATATGTGATAGATCCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGaa < 2:459209/233‑1 (MQ=255) accaccAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCaa > 1:502429/1‑239 (MQ=255) caccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAg > 1:1063597/1‑239 (MQ=255) ccaGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGt > 1:1118379/1‑238 (MQ=255) gttAGGTTTCAGCCCGGTCGCCGTTCCCGATGTAAGCAGGGGTGTTCTGAGCATAAGTGCGTTTGGAGCGGGAG‑ACCGCACCCCCGATACCAAACCCTT‑CGTAATCAAAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGc < 2:9581/172‑1 (MQ=255) ttCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGCTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCa > 1:287030/1‑238 (MQ=255) aGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTaaa > 1:9581/1‑174 (MQ=255) aGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTTACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCa > 1:402896/1‑239 (MQ=255) aGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAAcc > 2:104421/1‑238 (MQ=255) aGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCa > 1:896168/1‑239 (MQ=255) gTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCga > 1:625484/1‑239 (MQ=255) gTTCCCGATTTAAGCACGGGTGTTTTGGGAAACAGTATTTTGGGAGCGGAAA‑ATCGCCCCCCCGATACGAAACCCTT‑CGTAACCAAAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGt < 1:115111/239‑1 (MQ=255) cagcGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGCAGAAGTCAGTGTTACGGTAg > 1:364496/1‑239 (MQ=255) gcgttttCTGAGCATCAGTACTTTGGGAGCTGGAG‑CCCGCCCCCCCGTTACCAAACCCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCgaa < 2:945673/212‑1 (MQ=255) tttCTGAGCATCAGTACTTTTGGAGCGGGAG‑ATCCCCCCACCGATACCAAACCCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGa < 1:238843/238‑1 (MQ=255) ttCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCACACAGACCGAAGAAGTCAGTGTTACGGTAGGCAGCGaa > 2:820103/1‑239 (MQ=255) ggCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGGTACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTAACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAACAAAGTTCCGGGCGTCAACCAACACGAAGAAGTCCGTGTTACGGTAGGTCCGGACGCCGt > 2:135965/2‑239 (MQ=255) aGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAgtg > 1:945673/1‑217 (MQ=255) aGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGGGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGt > 1:904528/1‑239 (MQ=255) aTCAGTACGTTTGGAGCTGGAA‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGAGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGCAAAGCCTTCACCAGATGGGGTGACGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAATCAGACCGAAGAAGCCAGTGTTACGGTCGGGCGCGAAGCCGGTa > 2:1136023/1‑238 (MQ=255) cAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGCCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTAca > 1:692298/1‑237 (MQ=255) tgTTTGGGGCTGGAG‑ACCCCCCCACCGATCCCAAACCCTT‑CTTAATAAAAAGGTATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACgctg < 1:1136023/238‑1 (MQ=255) tttGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGAAGGTCGCGAAGCCGTTACCACgcg > 2:811520/1‑235 (MQ=255) gCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGa > 2:69971/1‑239 (MQ=255) ggAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGt > 2:74960/1‑239 (MQ=255) caccGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCg > 2:1104614/1‑239 (MQ=255) ccGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTAccc > 2:676165/1‑126 (MQ=255) ccGAAACCTT‑CGTAATAATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTAccc < 1:676165/126‑1 (MQ=255) aCCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGCGTcacca > 1:250168/1‑238 (MQ=255) aCCTT‑CGTAATAATAGGTGATAGACCCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTcaccac < 1:636593/239‑1 (MQ=255) | AACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCT‑GGGTGTACTGAGCA‑GCCAGGTAGATGTTGTTAGCGTCGTATTTCAGACCACCAGTGTAGGTTTCAGCACGGTCGCCGTTACCGATGTAAGCAGCGGTGTTCTGAGCATCAGTACGTTTGGAGCTGGAG‑ATCGCACCACCGATACCGAAACCTT‑CGTAATCATAAGTGATAGAACCGCCGACGCCGTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCCGTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCAC > NC_000913/2311885‑2312353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |