Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,617,326 | A→C | 16.2% | T105P (ACC→CCC) | nikD → | nickel ABC transporter ATPase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,617,326 | 0 | A | C | 16.2% | 166.7 / 4.1 | 70 | T105P (ACC→CCC) | nikD | nickel ABC transporter ATPase |
Reads supporting (aligned to +/- strand): ref base A (45/9); new base C (2/13); total (47/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.75e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCTGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGA > NC_000913/3617088‑3617564 | ccTGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGaaa < 2:535753/239‑1 (MQ=255) ccTGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGaaa < 1:1091971/239‑1 (MQ=255) tGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCTGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCACCGCCCTTA‑ATCCACTGCACACCATGCACACCCACCCGC‑GGGAAAc > 2:650057/1‑238 (MQ=255) tGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCCTGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCAAACCCCCGCGC‑GGAAAAc > 2:181880/1‑238 (MQ=255) tGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCCCGCGC‑GGGAAAc > 2:498429/1‑238 (MQ=255) tGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCATTTA‑ATCCACTGCACACCATGCACACCCACGCCC‑GGGaaa > 1:1058007/1‑237 (MQ=255) gCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAAcc > 1:1023834/1‑238 (MQ=255) cAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAAcct > 1:47754/1‑238 (MQ=255) cAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAAcct > 1:376108/1‑238 (MQ=255) aCGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAAcctgcc < 2:141445/239‑1 (MQ=255) gggCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGc > 1:1125799/1‑239 (MQ=255) gcgcGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCg < 1:684914/238‑1 (MQ=255) gcgcGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCg < 1:294728/238‑1 (MQ=255) cgTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAg > 1:977216/1‑239 (MQ=255) cggTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGCTGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCCCACCCACGCGC‑GGGAAACCTGCCAGGGGTTAGGGAAA‑C‑CCGCCGATGac > 2:806514/1‑238 (MQ=255) cggTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCCGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGCAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGac > 2:745023/1‑238 (MQ=255) aCCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCCACGCTTACCGCTGCCATAGAAGc > 2:1198542/1‑239 (MQ=255) cggcgcCGAAGCGGGGGGCTTGTGGCCGGCGGGGGTGCGCCGGGGGGGGGGGAAATTTTTGGCGGAGGGCAACCCGGTTCCGCCTGC‑CGCCCGGGGGGGCA‑AAAAAAT‑TGCCACAATAAGGCAGACCCCG‑CGCCGCGCTTTAA‑ACCCCCGGCACCCCAGGCCCCCCCCCGCG‑‑GGGGAACCCGGCGGGGGGTAGGGAAACC‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCgg < 2:35570/237‑1 (MQ=255) cgccgcAACGCTGGGCCTTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAACTTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCGGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCAACGCGC‑GGGAACCCTGCCTGGAGTTAGGCAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGCTGCGGTgg > 2:828238/1‑239 (MQ=255) cgccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGCCGGCGGGGGAAATTTTAGCCGATGGCAAACCGGGTTAGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATACACTGCACACCATGCACACCCACACGC‑GGGAAACCTGCCTTGCATTAGGGAAG‑C‑CCGCCGGTTACGCGACGCATACCGGTGCCATAGACGCGGTgg > 2:346975/1‑239 (MQ=255) cgccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTgg > 1:310564/1‑239 (MQ=255) cgccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTgg > 1:115118/1‑239 (MQ=255) cgccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTgg > 1:278428/1‑239 (MQ=255) cgccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTgg > 1:1009965/1‑239 (MQ=255) cgccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGATAGGGAAA‑C‑CCGCCGCTGACGCTACGCTTACCGCTGCCATAGAAGCGGTgg > 2:155341/1‑239 (MQ=255) gccgcAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTggg > 1:455831/1‑239 (MQ=255) ccgcAAGGGTGGGCAGTCGCCCCGGTGTGGTTCCCCAGGCGGCGGGAAAATGTGTACCCGAGGCCAAACCGTTTTCGCCTGG‑CTCCCTCCGCGGCA‑TAAAAGC‑CGCCACCATCGTGCCACGCGCG‑CGAACCGCTTTTA‑CCCCACGGCACCCCCGCCCCCCCCCCGCGC‑GGGAACCGCGCTGGGCTTAAGGGCAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTgggg < 2:387780/239‑1 (MQ=255) aCGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGa > 1:488725/1‑239 (MQ=255) tgggccccgcgggccgccGCCGGAGGGGGGGAAAAATTGAAGCAGATGACAACCGGGTTGCGCCTCG‑CCCCCGGCGGGGCA‑‑CAAAATCTCCCCCCATCAAGAAGACCCCC‑GGCGGCG‑CTTTA‑ACCCCCCTCCCCCCA‑CCCCCCCCCCCCGCGGGGAAACCTGGCGGGGGTTAGGGAAACC‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCcgcg < 2:435691/222‑1 (MQ=255) gtgccggtggtggcgcgcagggcggcggGGGAACTCTACGCCTAGGCCAACCCTGTTGCGCCCTG‑C‑CCCGGGGTGGCATTCAACCA‑TGCCACGATCAGGCACCGCCCG‑GGCAGCGCGTTTA‑CCCCCCCGCCACCCATCCCCCCCCACCGGC‑GGAAGACCTCCGGGGGGTTGGGGACG‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATTGAAGCGGTGGGGCTGGAAAACGCcgcgcg < 2:800484/217‑1 (MQ=255) tgggCGTCCCCGAGCCGGGGGGGGAATTTTAAGCCGAGGGAACCCCGTTGCCGCCTTC‑CGCCCGGCCGGACA‑AAAAACT‑TCCCCCCACCAGGCAGACCCCG‑CGCGGCGCCTTTA‑ACCCCCTCACCCCCATCCCCACCCCCGCGG‑GGGAACCCGGGCGGGTGTGAGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCt < 2:773118/236‑1 (MQ=255) gtggtctccgcacggcgggggGGGAATTTTGAGCCGAGGCAAAACCGGTTCCCCCTTC‑GCCCCTGCGCGCCA‑AAAAATT‑TCCCACAATCCGGCA‑AACCCGCCGCAGCCCTTTTA‑ACCCCCCGCACCCCACCCACCCCCCGGCGG‑GGAAAACCTGCCGGGCGTGGGGGAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCt < 2:1190146/223‑1 (MQ=255) gggggctgcGCCAGGGGGGGGGGGAAATTTT‑GCCGGAGGCCACGCCGTTTCCCCCTGCCGCCCTGGGCGGCA‑AAAAAAC‑CCCCACCACCAAGAAACCCCCG‑CGCAGCGCTTTTA‑CCCCCCCGCCCCCCACCCACCCCCCCGGGG‑GGAAACCCTGCGGGGCTTGAGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCt < 2:1205254/230‑1 (MQ=255) agtccgccggcgggggGGGAAAATTTTGGCGGAGGCAAACCCGGTTCGCCTTGCCGCCCGGCGCGCCA‑CCAAAAT‑CCCCCCCACCATCCAGACCCCG‑GCCGCCGCTTTTA‑CCCCCCTCCCCCCCACCCCCCCCCCCGCG‑‑GGGAAACCCGGCGGGGGGTAGGGAAACC‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAg < 2:579496/228‑1 (MQ=255) aCGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAACCGCCGCGCGCGTGCGGAAGCTGTACCCGt > 2:495435/1‑238 (MQ=255) cggcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTc > 1:640049/1‑239 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCggg > 2:208513/1‑237 (MQ=255) caatcgcgTTTCCCCGCG‑CCCCCTGCGGGCCA‑CAAAAAT‑GCCCACCATCATACAGACCCCG‑CGCCGCCCTTTTA‑ACCCACTACACACCACCCACCCCCCCGCGC‑GGGAACCCGGCGTGGGGTTGGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAg < 2:1125799/231‑1 (MQ=255) tgtgcagtggattaaaggcgcTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAgcgc > 1:868018/21‑239 (MQ=255) cctccccccgtGCGGGACA‑ACAATAT‑CGCCAACACCGTGAAGACCCCG‑CGC‑CCCCCTTTACACCCCCCGCACACCACCCCCCCCCACGCGG‑GGGAACCCTGCCGGGTGTGAGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGc < 2:959593/229‑1 (MQ=255) cccTCCGCGACA‑AAAAAAC‑TCCCCCCACCATGCCGAACCCG‑CGCAGCGCCTTTC‑ACCCACTCCCCCCCATGCCCCCCCCCGCGC‑GGAAACCCTGCCTGGGTTGAGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCg < 2:242118/239‑1 (MQ=255) cTGCGCCGCA‑TCAAAAT‑TGCGACCATCATCCAGAACCCG‑CTCAGCGTCTTTA‑ATCCAGTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAACCGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGATGCAGCGCATGATGATTGCGATGGCGGt > 2:516712/1‑239 (MQ=255) tGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGCTGAGCGGCGGCATGTTGCAGCGCCTGATGATTGCGATGGCggg > 2:81153/1‑237 (MQ=255) tGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGt > 1:339949/1‑238 (MQ=255) gcgcGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGc > 2:807719/1‑239 (MQ=255) ggtataaaaaT‑ACCCTCCATAACGCAGAACGCG‑CGCAGCGCCTTTA‑CTCCACCGCCACCCACGCCCCCCCGCGGGG‑GGAAACCCTGCCGGGCGGT‑GGGAAA‑CACCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCtgt < 2:636385/232‑1 (MQ=255) cAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGaa > 1:398779/1‑238 (MQ=255) caaactccccaccaTCGTGCAGACCCCG‑CGCAGCCCTTTTA‑CCCCCCCCCCCCCCCCCCCCGCCCCCGCGG‑GGAAACCCTGCCTGGGGTAAGGGAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAAt < 2:1223167/231‑1 (MQ=255) gCCACCATCATGCAGAACTCC‑CGCAGCGCCTTTA‑ATCCACTGCCCACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCACAGCAGCGGTGGGGCCGGAAAAAGCCGCGCGCGTGCTGATGCCGTACCAGTTCGAGCTGTGCTGCGGCATGTTGAAGCGCATGATCATTGTGATGGCGGTGCTGTGTGAATCTcctgt > 2:766341/1‑236 (MQ=255) cccG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGGTGATTGCGATGTCGGTGCTGTGGGAATTCCCGTTTATCATCCCCGATTaa > 2:249302/1‑238 (MQ=255) ccG‑CCCAGCGCCTTAA‑ACCCCCCGCCCCCCTACCACCCCCCCGCGG‑GGGAACCCGGCCGGGGGTTGGGAAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAacc < 1:503346/239‑1 (MQ=255) g‑cgcAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑AGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAaccg > 1:1209450/1‑238 (MQ=255) cgcAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAaccga > 2:1047640/1‑238 (MQ=255) cgcAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAaccga > 2:653467/1‑238 (MQ=255) gccgcttaaa‑aTCCCCTGCACACCAGTCCCCCCCCCGCGG‑GGAAAGCCTGCCGGGCGTTAGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAaccgaccac < 1:806514/230‑1 (MQ=255) gccgcCTTTA‑CTCCCTGGCACACCATGCACACCCACGCGC‑GGGAACCCGGCAGGGTGTTAGGAAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAaccgaccac < 1:960655/237‑1 (MQ=255) ccTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGGTGATTGCGATGGCGGTGCTGTGGGAATCACCGTTTACCATGGCCGATGAaccgaccaccga > 2:100968/1‑238 (MQ=255) cTGCACACCATGCACACCGACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGGGCTGAAGCTGAACACGTTCGAGATGAGCGGCGGCATGTTGCAGGGCATGATGATTGCGATGGCGGTGCTGAGTGGAGCACCGTTAATCACCTCCGATGGaccgaccaccggcatttgcggcgt > 2:842906/1‑226 (MQ=255) cTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGCGTGAATCACCGTTTATCATCCCCGTTGAGCCGACCACCCCCCCTGGCGTGGt > 2:947106/1‑239 (MQ=255) gCACCCCATCCCCCCCCAGGCGG‑GGAACCCCTGCCTGGCGTTGGGGAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAg < 1:199221/239‑1 (MQ=255) gCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTa > 2:712454/1‑238 (MQ=255) accccaccccccccgccggggggAAACCGGGCGGGGGGTGGGGAAACC‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGca < 2:977216/219‑1 (MQ=255) acCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGcaca > 1:901436/1‑239 (MQ=255) tGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGCACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGAGGAACCGCCCACCGACCTTGACGGGGTAGCACGGgc > 2:137208/1‑238 (MQ=255) gCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTa > 1:1081045/1‑229 (MQ=255) ccccccccCGCGC‑GGGAACCCGGCGGGGGGTAAGGAAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGgcgcg < 1:650057/235‑1 (MQ=255) acCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCa > 2:280613/1‑238 (MQ=255) acCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGAGGAACCGACCACCGACCTTGCCGTGGTAGGACAGgcgccgc > 2:1203635/1‑235 (MQ=255) ccccccggcggggAACCCTGCGGGGCGTGGGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCAt < 1:1039830/229‑1 (MQ=255) cccACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCAt > 1:663764/1‑238 (MQ=255) cACGCGC‑GGGAACCCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGCAGCTGTACCCGTTCGGGATGAGCGGCGGCATGTTGCCGCGCATGTTGATTGCGTTGGCGGTGCTGTGTGAGTCACCGTTTCCCATCGCCGATGAACCGACCACCGACCTTGCCGTTGTAgtctcggcccccatcc > 2:566885/1‑223 (MQ=255) cACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGCTGGCGGTGCTGTGTGAATCACCGTTTATCATCGCAGATGAACCGACCACCGGCCTTGACGTGGTAGCACCGGCTCGCAGcc > 2:357007/1‑238 (MQ=255) cgcgc‑gGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCg > 1:422992/1‑239 (MQ=255) ggggaacaCCTGCCTGGCGTTGGGGAAC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATc < 1:498429/232‑1 (MQ=255) aCCTGCGGGGCGTGAGGGACC‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGa < 1:1096417/239‑1 (MQ=255) | CCTGCAACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGCCCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTG‑CGCCCTGCGCGGCA‑TCAAAAT‑TGCCACCATCATGCAGAACCCG‑CGCAGCGCCTTTA‑ATCCACTGCACACCATGCACACCCACGCGC‑GGGAAACCTGCCTGGCGTTAGGGAAA‑C‑CCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGA > NC_000913/3617088‑3617564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |