| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,237,260 | T→C | 21.0% | V122A (GTC→GCC) | yjbG → | extracellular polysaccharide export OMA protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,237,260 | 0 | T | C | 21.0% | 179.0 / 5.5 | 79 | V122A (GTC→GCC) | yjbG | extracellular polysaccharide export OMA protein |
| Reads supporting (aligned to +/- strand): ref base T (44/16); new base C (2/17); total (46/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.42e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCGATCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGCCGGTGGCTTA > NC_000913/4237025‑4237497 | aTCGATCTGGTAGGCCAGCCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCCGCATTGCGTCAGCAGCAGGCG‑TGGCTGTCACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCcg < 1:410333/239‑1 (MQ=255) cgctCTGGTAGGCGAGCCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCcgcg < 2:41427/236‑1 (MQ=255) aTCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACTGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGCTGCCGCCGCGATTAACGCCTTACGCCAGCAACTTCAGGCGCTGCAAGGGACGGGCCGGTAAAAAATCAATCTTGATCCCGATATCGCCCGCGtt > 2:791821/1‑239 (MQ=255) aTCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGtt > 2:955246/1‑239 (MQ=255) aTCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCCATATCGTCCGCGtt > 1:76045/1‑239 (MQ=255) aTCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTAGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCCACGATGCCGCCGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGCCCGCGt > 1:821681/1‑238 (MQ=255) tCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGtt > 1:353379/1‑238 (MQ=255) ccAACCGCGGCGGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAAcg < 1:945078/237‑1 (MQ=255) cAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCgg > 1:1055361/1‑239 (MQ=255) cAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCgg > 2:1218065/1‑239 (MQ=255) aCCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCGGCACGCGGTa > 2:671617/1‑239 (MQ=255) cgcgGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTaa > 1:334751/1‑238 (MQ=255) aaatggcggggggCCGGGGGGGGTAATTGGCGAGGAGGTGGAAAC‑GGGGGCAGATTTGCGACAG‑AGGAGGGGTTTGCTGACGGGGCGGGAAGAACGGGGCGCAGTTTCCA‑GCGCGGAGGATGCCGCGGCGATAAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGAGGGGCAGGAAAAAAATCAATCTTGTTCCCGATACCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTg < 2:1174662/227‑1 (MQ=255) cgggcggggggCCGGGGGCGGTGATTGGCGAAGAGCGGGCAAC‑GGCGGCAGCATGGCGTAAGCGGCGGGCG‑TTGCTGACACGGCGGGAAGAACAGGGCGCAGATCCCA‑GCGCGGACGATGCCGCGGCGATTAACGCCTTCCGCCAGCAAATCCGGGCGTTGAAAGGGAGGGGCAGGCAAAAAATCAATCTTGACCCCAATATCGCCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAg < 2:1069725/230‑1 (MQ=255) ggCCCGGGGGGGTGATTGGGGAAGGGCGGGAAAC‑GGGGGCAGCATTGCGTCAGCAGCGGGGG‑TTGGGGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGAGGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTGGACCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTa < 2:560983/238‑1 (MQ=255) ccggggggggttATTAGCG‑AGAGGCGGCGACGGGGGGCAGGATTGCGGCGGCGGCGGGGG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATCCCA‑GCGCGGACGATGCCGGTGAGATTAACGCCTTACGCAAGAAAATGCAGGCGTTGAAAGGGACGGGCAGGAAAAAAATCAATCTGGACCCCGATATCGCCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTaca < 2:208362/230‑1 (MQ=255) cccGGTGGGGTAATTAGCGAAGGGCGGGCAGG‑GGCGGGAGCATTGCGTCAGCAGCGGGCG‑TTGCTGACACGGGGGGCAGAACGGGGCGCAGATCCCG‑GGGCAGACGAGGCCGCTGCGATTAACGCCTTACGCCAGAAAATTCAGGCGTGAAAGGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTGGCCGAACGGGGTAACCCGCCGTTGCAGGGCAACTaca < 2:54267/238‑1 (MQ=255) ccGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTacac > 1:35546/1‑238 (MQ=255) ccGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTacac > 2:1122117/1‑238 (MQ=255) ggtgcggtgATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTacac > 1:802151/1‑236 (MQ=255) gcggtgATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGGGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGAGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCtgtg > 2:146572/1‑239 (MQ=255) aGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGCCAACTACACGCTGTGGGTCGGacc > 1:932483/1‑239 (MQ=255) aGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGGAACCCGCCGTTGCCGGGCAACTACACGCTGTGGGTCGGacc > 1:742253/1‑239 (MQ=255) aGCGAAGAGCTGGCAAC‑GGCGGCAGCATTACGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGACTTACGCCAGCAAATTCAGGCGTTGCAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGacc > 1:254046/1‑239 (MQ=255) ggAAGAGATGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGCAAGGGCTGGCAAAACAGGGCGAAGATCCCG‑GCGCCGAGGAGGCCGCTGCGATTAACGCCTTACCCCAACAAATCCGGGGGTTGAAAGTGACGGGCAGGAAAAAAACCAATCTTGATCCCGATATCGCCCGCGTTGCCGAACGCGGTACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGacca < 2:1167602/237‑1 (MQ=255) agagCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCAccg > 1:1187249/1‑238 (MQ=255) ggcgggaacc‑ggcggCAGCGGTGCGTCGGCGGCAGGCG‑TTGCGAACACGGCTGGAAGAACAGGGCGAAGATCCCA‑GCGCCGAGGAGGCCGCTGCGATTACCGCCTTCCGCCAGAAAATTCAGGCGTTGAAAGTGCGGGGCAGGAAAAAAATCAATCTTGACCCCGATACCGCCCGCGTGGCCGACCGCGGAACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCAccgc < 2:35546/228‑1 (MQ=255) agCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCAccgccg > 1:1230408/1‑239 (MQ=255) agCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGCTGCCGAACGCGGTAACCCGCCTTTGCAGGGCAACTACACGCTGTGGGTCGGCCCAccccc > 2:1035036/1‑238 (MQ=255) ggcggcAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCCGCAAATTCAGGCGTTGCAAGTGACGGGGAGGCAAAAAATCCATCTTGATCCCGATATCGTCCGCGTTGCCGAACCCGGGAACCCGCCGTTGCAGGGCAACTCCACGCTGTGGGCCCGACCCCCACCGTCCACggcc > 2:965857/1‑236 (MQ=255) cggcAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGCTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACg > 1:1044438/1‑239 (MQ=255) aTTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCGGCGATTAACGCCTTACGCCAGAAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATACCGTCCGCGTTGCCGAACGCGGTACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACgttgtt < 1:108000/237‑1 (MQ=255) gcagcagGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCa > 2:726510/1‑239 (MQ=255) gcagcagGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGAAGGGCAACTACACGATGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCa > 2:134/1‑239 (MQ=255) agcagGGT‑TTGCTGACACGGCTGGGAGAACAGGGCGCAGATTCCA‑GCGCCGACGAGGCCGCTGCGATTAACGCCTTACGCCAGAAAATTCAGGCGTGAAAAGTGACGGGAAGGAAAAAAATCAATCTTGACCCCGATTTCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAg < 1:686782/238‑1 (MQ=255) tGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAag < 1:621066/239‑1 (MQ=255) acagGGCTGGAAGACAGGGGCGCAAATCCCA‑GCGCGGAGGATGCCGCTGCAATAACCGCCTTACGCCAGAAAATTCGGGCGTGAAAAGGGACGGGAAGGAAAAAAACCAATCTGGACCCCGATATCGCCCGGGTTGCCGACCGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAagca < 2:347439/239‑1 (MQ=255) gcggggggaagaagaGGGCGCA‑ACTCCAGGCGCCGGCGGTGCCGTGGCGATTAAGACCTTCCGCCAGCAAATTCAGGCGTGGAAGGTGCGGGGCAGGCAAAAAATCAACCTGGACCCCGATATCGTCCGCGTGGCGGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAagcag < 2:382944/229‑1 (MQ=255) cGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGcc > 2:73308/1‑239 (MQ=255) tgccaaaaCAGGCCGCAATTCCCA‑GCGCCGACGAGGCCGCGGCGATAAACGCCTTCCGCAAGAAATTCCGGGCGTGGAAAGGGAGGGGCGGGAAAAAAACCACTCTTGACCCCGATACCGCCCGGGTGGCCGACCGCGGAACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCAtt < 2:110893/232‑1 (MQ=255) tGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAACCAGCCATTc > 1:851799/1‑239 (MQ=255) ggCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGt > 1:110893/1‑237 (MQ=255) ggCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGGGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTcg > 2:1010252/1‑239 (MQ=255) cgcAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTcgcg > 2:1238289/1‑239 (MQ=255) cgcAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTcgcg > 2:344155/1‑239 (MQ=255) aGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACg > 1:389489/1‑239 (MQ=255) tcccA‑GCCCCGAGTATGCCCGTGCGATTCACCCCTTACGCCGGCAAATCCGGGCGTTAAAAGGGACGGGCAGCAAAAAAATAAATCTTGATCCCGATATCGCCGGCGTTGCCGAACGCGGTACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTgg < 2:1041343/237‑1 (MQ=255) tcccggccccGACGATGCCGCTGCGATTACCGCCTTCCGCCAGAAAATTCAGGCGTTGAAAGTGACGGGCAGGAAAAAAATCAATCTTGATCCGGATATCGCCGGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGt < 1:163927/229‑1 (MQ=255) acgaTGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCCGCCATTCACTCCAGGTCGCGACGTGGCGAGCTAtcc > 2:1118025/1‑237 (MQ=255) cgaTGCCGCGGCGATAAACGCCTTACCCAAGCAAATTCAGGCGTAGAAAGTGACGGGAAGGAAAAAAATCAATCTTGATCCCGATACCGCCCGCGTTGCCGAACGCGGTACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTAtctct < 1:955246/239‑1 (MQ=255) cGCTGCGATTAACGCCTTACGCCAGAAAATTCAGGGGTTGAAAGGGACGGGCAGGAAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGAcc < 1:1122303/239‑1 (MQ=255) tccGATTAGCGCCTTACCCGAGAAAATTGAGGGGTGGAAAGGGACGGGCAGGAAAAAAAACAATCTTGCCCCCGATACCTCCCGCGTTGCCAAGCGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCaga < 2:1055361/237‑1 (MQ=255) tGCGATAAACGCCTGACGCCGGAAAATTCAGCGGTGGAAAGGGACGGGCAGGCAAAAAATCAACCTTGACCCCGATATCTTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCag < 1:671617/238‑1 (MQ=255) ggcaataaaCGCTTTACGCCACAAAATGCGGGCGTTAAACGGGACGGGCAGGAAAAAAATCAATCTTGACCCCGATCTCGTCCGCGTGGCCGAGCGGGGCACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCaga < 2:517099/232‑1 (MQ=255) gcttcaCGCCAGAAAATCCGGGGGTTGAAGGTGACGGGCAGGAAAAAAATCAATCTTGATCCCGATCTCGCCCGCTTTGCCGACCGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAg < 2:334751/234‑1 (MQ=255) gCCTCACGCCAGAAAATTCAGGGGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGACCCCGATATCGTCCGCGTTGCGGAACGCGGTACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAg < 1:1212773/239‑1 (MQ=255) tACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGt > 1:1165277/1‑239 (MQ=255) tACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGt > 1:763127/1‑239 (MQ=255) tACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGt > 1:521873/1‑239 (MQ=255) aCGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGt > 1:1184619/1‑238 (MQ=255) gccacaaaaTTCAGGCGTTGAAAGTGCCGGGCAGGCAAAAAATCAATCTTGACCCCGATACCGCCCGCGTGGCCGACCGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCg < 1:650104/233‑1 (MQ=255) cAGAAAATCCAGGCGTTGAAAGTGAGGGGCAGGCAAAAAACCAATCTTGACCCCGATATCGCCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAg < 2:557788/96‑1 (MQ=255) cAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATc > 2:171413/1‑238 (MQ=255) aTTCGGGGGTGGAAAGTGAGGGGAAGCAAAAAAACCAATCTGGCCCCCGTTTCCGCCGGGGTGGCCGACGGCGGTACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAg < 2:1230408/239‑1 (MQ=255) aGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTaca > 1:557788/1‑96 (MQ=255) gCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTAcgc > 1:207826/1‑239 (MQ=255) tGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGtt > 1:502316/1‑239 (MQ=255) cGGGCAGGAAAAAAATCAATCTTGACCCCGATATCGCCCGGGTTGCCGACCGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTAc < 1:484444/239‑1 (MQ=255) caggcaACAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACTCTGGGGGTCGGACCCCCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGGCCTGGCAAGCAGCCATTCACTCCCGGTCGCGACGTGGCGAGCTATCTCTCTGACCCGAGCATGCCCAGCGGTGCCGATCGCAGCTGCGCGCCAGTGGATTAACcg > 2:1204842/1‑238 (MQ=255) aaaaCCAATCTTGACCCCGTTATCGCCCGCGTGCCCGACCGCGTAACCCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGgacggacg < 2:1067448/239‑1 (MQ=255) atcactgtgtccccagATATCGCCCGCGTTGCCGCGCGGGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGacgcac < 2:353379/224‑1 (MQ=255) aatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGAcgcacgca > 2:430528/1‑239 (MQ=255) aatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGAcgcacgca > 2:783718/1‑239 (MQ=255) aatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTAGGACCACCGCCGTCCACGGTCACg > 1:100116/1‑99 (MQ=255) aTCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAgc > 2:589316/1‑238 (MQ=255) gATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGCCGGt > 1:452388/1‑239 (MQ=255) gATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGCCGGt < 1:783718/239‑1 (MQ=255) tatCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGCCGGTgg < 1:73308/239‑1 (MQ=255) tatCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGCCGGTg > 2:9115/1‑238 (MQ=255) tCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGGGGTTTACCCGGACGGACGCAAGCAAAAAGCGCGGGGGGCTTa > 2:1134696/1‑238 (MQ=255) | ATCGATCTGGTAGGCCAACCGCGGCTGGCAAACAGCTGGTGGCCCGGTGCGGTGATTAGCGAAGAGCTGGCAAC‑GGCGGCAGCATTGCGTCAGCAGCAGGCG‑TTGCTGACACGGCTGGCAGAACAGGGCGCAGATTCCA‑GCGCCGACGATGCCGCTGCGATTAACGCCTTACGCCAGCAAATTCAGGCGTTGAAAGTGACGGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAACCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGCCGGTGGCTTA > NC_000913/4237025‑4237497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |