New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2791460 =	117 (0.910)	3 (0.020)	3/414	NT	2.8%	coding (190/1449 nt)	gabD	succinate‑semialdehyde dehydrogenase I, NADP‑dependent
	?	NC_000913	2791491 =	99 (0.790)					coding (221/1449 nt)	gabD	succinate‑semialdehyde dehydrogenase I, NADP‑dependent

GCTTGATAACAATCAGGCGTTTATCGGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2791703‑2791460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccaCCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGG  >  NC_000913/2791491‑2791724                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTTGATAACAATCAGGCGTTTATCGGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCG                                                                                                                                                                                                                                                 <  2:679144/239‑1      ATAACAATCAGGCGTTTATCGGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTTATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCA                                                                                                                                                                                                                                            <  2:980760/239‑1         ACAATCAGGCGTTTATCGTCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCctgatga                                                                                                                                                                                                                                         <  1:356433/239‑8                                                                                                                                                                                ATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGC                                                                                                                      <  1:393691/187‑1                                                                                                                                                                                ATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGAGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGC                                                                                                                      >  2:393691/1‑187                                                                                                                                                                                     CCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTATGGCGACACCATT                                                               >  1:1428425/1‑237                                                                                                                                                                                                                                              CGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGC    <  1:1302738/239‑1                                                                                                                                                                                                                                                 GCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGG  <  2:866488/238‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTTGATAACAATCAGGCGTTTATCGGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2791703‑2791460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccaCCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCCTCGAACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGG  >  NC_000913/2791491‑2791724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.