| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,367,397 | T→C | 22.6% | I110T (ATC→ACC) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,367,397 | 0 | T | C | 22.6% | 136.4 / 6.2 | 78 | I110T (ATC→ACC) | arnC | undecaprenyl phosphate‑L‑Ara4FN transferase |
| Reads supporting (aligned to +/- strand): ref base T (22/30); new base C (2/13); total (34/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.46e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTC > NC_000913/2367163‑2367627 | caGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATTGGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATc‑ccc < 2:882663/239‑1 (MQ=255) tgtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTT‑AAGTTACTTGGGGAC‑TT‑‑ATTATTTCCCTTTATTCCCGTCTCCAGAATCCGCCCC‑AAGAAAAC‑CCCCGccc > 1:1219189/1‑238 (MQ=255) tgtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCCGTT‑CCCGTAC‑TTGCGAC‑TT‑AATTATTACCCTTGATGCCGGTCTCCCGAATCCGCCAG‑AAAAAAAc‑cccccccc > 1:54682/1‑238 (MQ=255) tgtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGCATTCATCT‑ACGTCAC‑AGGTGAC‑TTCATTTTTTGCCCTTG‑TGCCCATCCCCACAAACCACCAG‑ACGAAAAA‑Ccccccc > 1:156309/1‑238 (MQ=255) tGGGGAAAGAGTATGAGATCCTGCTGATTGAGGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCaaaa < 1:921410/239‑1 (MQ=255) gggAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCAGTC‑AAGTTAC‑TGGCGAC‑TT‑AATTATTACACTTGTTGCCGATTTCCCGGATACCCCAA‑GAGAAAAC‑TCCCGCCC‑GGTGGCagaaa > 1:735655/1‑237 (MQ=255) aggagtattgaaTCCTGCTGCTTGAGGATGGCGGTAGCGATCTCTCCGTCCAGATGCGGTTCGAAGCCTCACAAGAGTACAACACCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATGCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGCC‑TT‑AATTATTACCCTTGATGCCGAGCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGAt < 2:1002060/228‑1 (MQ=255) agagTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATg < 1:975068/239‑1 (MQ=255) agTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCTGTC‑ACATTAC‑TTGGGAC‑TT‑AATTATTATCCCTTATGCCCATCTCCAGAATCCGCCAG‑AAGAAATA‑ACCCCCCC‑GGCGGCaaaaaaagcggaa > 2:835396/1‑230 (MQ=255) aaTCCGGCTGAGTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTacg < 2:54682/238‑1 (MQ=255) aTCCTGCTGATTGATGACGGCAGGAGCGATAATTCCGCGAATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTacg < 1:556668/238‑1 (MQ=255) tCCTGTTGATGGATGCGGGAAGTGGGGATAATTCCGCGAAAATGCTGGTCGAAGCCTCCAAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTGGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTacgac < 2:395186/239‑1 (MQ=255) tCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTacgac < 1:787869/239‑1 (MQ=255) tCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTacgac < 1:401396/239‑1 (MQ=255) tCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTacg < 1:835396/237‑1 (MQ=255) tgctgATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTTAGTC‑ACGTTAA‑TTGCGGCTTT‑AATTTTTACCCTTG‑TGCCGGTCTTCCTAAACCCCCAGAAAAAAACC‑CCCCCCCG‑GGGGGCAAAAACC‑ATGAAAGGTacggaggg > 1:1000130/1‑234 (MQ=255) tgctgATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TTGCGGC‑TT‑TATTATTACCCTTTATACCGATCTCCAAAAACCCCCCG‑AAGAAAAC‑CCCCCCCT‑GGGGGCAAAAACCCACGAAGGGTacgaaggg > 1:1052704/1‑235 (MQ=255) ctgATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTC‑ACGTTAC‑TTGCGAC‑TT‑TATTATTTCCCTTTTTGCCGGTCTCCCGAAAACCCCCG‑AAGAAAAC‑CCCCGCCC‑TGTGGCAAAAAACCAAGAAGGGTACAACGGGGt > 1:397091/1‑239 (MQ=255) attgatGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTC‑ACCTTAC‑TTGCGGC‑CT‑TATTATTATCCCTGTTTCCGATCTCCCACATCCCCCAC‑AAAGAACC‑CCCCCCCC‑CGTGGGCAAAACCGCTGAAgggtcacacgcgggagg > 2:1254879/1‑224 (MQ=255) tgatgaCGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGa < 1:1067930/239‑1 (MQ=255) tgaGGGGAGTAGCGTAAAATCCGCGCATTTGTTGTCGGAGGCCTCACAGGGGGAGAACAGCCATATTGTGTTTATTTTTCTTACCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCGGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTCCCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTg < 2:1064388/239‑1 (MQ=255) tgaCGGCAGTAGCGATAATTCCGCGCATTTGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTg < 1:553539/239‑1 (MQ=255) tgaCGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTg < 1:357740/239‑1 (MQ=255) tgaCGGCAGTAGCGATAATTCCGCGCATATGCGGGTCGAAGCCTCAAAAGCGGAGAACAGCATTATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTg < 1:503932/239‑1 (MQ=255) ggCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCAACTTTCC‑TGG‑GGC‑TT‑AATTATTATCCTTTTTGCCGATCCTCCGAATACGCCCG‑AAGAAAAC‑CACCCCCT‑CGTGGCCAAAGCCGCTGAAACTTTCGACCTGGGTGGGCCTggaa > 2:391819/1‑235 (MQ=255) gcgcATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGGC‑TT‑TATTATTACCCTTGATGCCGATCTCCAGAATCCGCCCG‑AAGAAATA‑CCCCCCCC‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTGGGGGCTGGACGCCAGAAACGCCCGGACa > 1:1313442/1‑238 (MQ=255) atatGCTGGTAAACGCCCAAAAGGCGGAAAACAGCATTTTTTTTTCTATTTTGCTTAACCGCAATTCCGGGCAACATTCAGCGATTATGGCGGGTTTCAGTC‑CCGTTAC‑TGGCGAC‑TT‑AATTATTCCCCTTGATGCCGATCCCCAGAACCCGCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑gg < 2:1313442/239‑1 (MQ=255) cGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAAAT‑ACAGTTC‑TTGCGAC‑TT‑CAATATTATCCCTTTTTTCGATCTCCCGAAACCCCCCG‑AAAAAAACACCCCCCCC‑GGTGCCAAAAACCCTGTAAGGTAACACCGGGGTGGGGGC‑GTTCGCCAGAaccaccccgcaaaccgggcttgtgaaa > 2:1047707/1‑218 (MQ=255) gCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGGC‑ACGTTAC‑CGGCGAC‑TT‑AATTATTAACCTTTATGCCGATCTCCAGAATCCCCCCG‑AAGAAAAC‑CCCCCCCT‑GGCGGGAAAAACCGATGAAGGGTACGGCGTGGGAGGGACTGTACGCCCGAACCGCCCGGACAGC‑T‑GGGTTTGGAAAACCg > 2:372848/1‑238 (MQ=255) gCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCATTC‑ACGTTAC‑TGGCGAG‑TT‑AATTATTTCCCTTGCTGCCGATCTCCACAAACCGCCCG‑AAGAAATC‑CCCCCCCC‑GCTGGCAAAAAGCGACGAAGGCTACGCCGTGGGAGGGAGAGTCCGCCAGAACACCCAAGACAgacggtgtttgaaaaacg > 2:1289591/1‑221 (MQ=255) ccccaaaggCGGAGACCAGCAATATTGTGTCTATTTTGTTTAACCCCAATTACGGGCAACATTCAGCGATTATGGCGGGATTAAGCC‑CCGTTAC‑TGGCGAT‑TT‑ATTTATTCCCCTTGATGCCGACCCCCAGAATCCGCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCt < 2:759033/231‑1 (MQ=255) acacacaAGGGGAGAACAGCCATTTTGTGTCTATTTTGCTAAACCGAAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTCC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑TGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCt < 2:397091/236‑1 (MQ=255) accAGCAATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTCCCCTTGATGCCGATCTCCAGAACCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTaa < 1:372848/237‑1 (MQ=255) aaCAGCCATATTGTGTCTATTTTGCTTAACCGCAATGACGGGAAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGCC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTaa < 1:396801/239‑1 (MQ=255) cAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTC‑ACGTTAC‑TTGGGGC‑CT‑AATTATTACCCTTTGTTCCGATCTCCCAAATCCCCCCG‑AAGAAATC‑CCCCCCCC‑TGTGGCAAAAACCGCTGAAGGGTATCACGCGGGGGGGGCTGTTAGCCCGAAACGCCCGGACAGC‑TGGGTTTTGAAAAAcacctcggaaggggtttaa > 2:701846/1‑220 (MQ=255) ttGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCCTTATGCCGATCTCCAGAATCCGCCAG‑AAGAAAAC‑CCCCCCCT‑GGTGGCAAAAGCCGATGAAGGGTACGACGTGGTAGGGACTGTACGCCAGAACCGCCCGGACAGC‑T‑GGGTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTAtt > 1:342140/1‑239 (MQ=255) tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTTC‑TGGCGAC‑TT‑AATTATTACCCTTGCTTCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTTGCTAAAACCGATTAAGGTTACGACGGGGGAGGGGCCGTACGCCAGAACCGCCCGGACAGC‑T‑GGGTTCGTAAAAACGCTTCGAAGATGATTAACCGGcgtttttcgc > 1:520752/1‑229 (MQ=255) gCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTC‑ACGTTAC‑TGGCGCC‑CT‑AATTATTACCCTTTCTGCCGATCTCCAGAAACCCCCCG‑CAGAAATT‑CCCCCCCC‑CGTGGCCAAAGACGATGAAGGTTTCGGCGCGGGAGGGGCAGTACCCCCGCACCGCCACGAGACCAC‑GGTTTCGTACAA‑AGCTTCCCTGATGATTTAACGGCTCATTCCGCGCCGCACTg > 2:6715/1‑239 (MQ=255) aaTTGCGGGCAACAGTCGGCGTTTGGGGCGGAAATGAGTC‑ACGTACC‑GGGCAAT‑TT‑ATTTATCCCCTGTAATGCCGACCACCAGAACCCGCCAG‑AAAAATTC‑CCCCGCTT‑GGGGGCAAAAGCTGAAGAAGGTTACGGTGTGGTGGGAACTGAACGCAAAAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGAt < 2:156309/239‑1 (MQ=255) aaTTACGGGCAACATTCAGCGATTATGGCGGGATTCAGCC‑ACGTTAC‑TGGCGAT‑TT‑AATTTTTACCCTTGATGCCGATCCCCAGAATCCGCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGAt < 1:150396/239‑1 (MQ=255) ttACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGCC‑TT‑AATTATTACCCTTGATGCGGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGa < 1:583896/126‑1 (MQ=255) ttACGGGCAACATTCAGCGATTAGGGCGGGATTCAGTC‑ACGTTAC‑GGGCGAC‑TT‑AATTATTCCCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATgg < 1:1047707/239‑1 (MQ=255) aaCATTCAGCGATTATGGCGGAATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTCCCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTa < 1:701846/238‑1 (MQ=255) aTTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTa < 1:389578/131‑1 (MQ=255) cgggatctagcactgTTAC‑GGGCGCT‑TA‑AATTATTGCCCGTGATGCGGGTTCCCAAAACCAGCCAA‑AAAAAACC‑CCCCGCCT‑GGGGGCAAAGGCAGAGAAGGGTTAGGAGGTGGTAGGGACGGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTgcgcgc < 2:827248/224‑1 (MQ=255) tccactccgtttAT‑TGGCCAT‑TA‑AATTATACCCCTTGTCGCCGATCTCCAGAACCCCCCAG‑AAAAAACC‑CCCCGCCG‑GGTGGAAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCg < 2:342140/229‑1 (MQ=255) cGTTAC‑TGGCGAC‑TT‑AATTATTACCCTGGATGCCGATCACCAGAACCCGCAAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGGGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCata < 1:665118/239‑1 (MQ=255) gTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCAAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCatat > 1:166865/1‑239 (MQ=255) aC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATg < 1:1446224/82‑1 (MQ=255) aC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATg > 2:1446224/1‑82 (MQ=255) ggCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATAtt > 1:1397058/1‑234 (MQ=255) ggCGAC‑TT‑AATTATTACCCTGGATGCCGATCTCCAGAACCCCCAAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcga < 1:1254879/239‑1 (MQ=255) gAC‑TA‑AATTATTCCCCTGGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg < 1:1424038/238‑1 (MQ=255) gattt‑AATTATTCCCCGTGATGCCTATCGCCAGAATCCGCCAA‑AAGAATTC‑CCCCGCCT‑GGTGGCAAAAGCCGAGGAAGGTTACGACGTGGAAGGGACTTAACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg < 1:1353169/235‑1 (MQ=255) aC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcg > 1:242535/1‑239 (MQ=255) ttaaaTTATTCCCCTGAATGCGAATCTCCAGAA‑ACGCCAG‑AAAAAAAC‑CCCCCCCTGGGGGGCAAAGCCCGTTGAAGGTTACGACGGGGTAGGGCCTGTACGCCGGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcga < 2:1000130/236‑1 (MQ=255) cattattACCCTCAATGCAGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCCCCT‑GGTGCCAAAAGACGATCAAGGTTACGACGTGGAAGGTACTGTACGCAAGAACGGCCAGGACCGC‑T‑GGGTTCGTAAAACCGCTTCGCAGACGTCTAACCGGCTCATTCAGAGCACCACTGACAAAGCGATGGGTGATGCCGGATGAATGCTGCGCTCCGATCGACCACATATGGTCGGTGCGAGGt > 2:1212678/2‑239 (MQ=255) tttccccTTGAGGCCAGTCTCAAGAGCCGGCAAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGAGGAAGGTTGCGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa < 2:1303471/235‑1 (MQ=255) cttccccTGGAGGCTGATCCCAAGAACCCCCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGAAAAAGCCGATGAGGGTTACGACGTGGGAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa < 2:271681/235‑1 (MQ=255) atgaccctggtgcgcgaccccaaGAACCCGCCGG‑AAAAAACC‑CCCCGCTG‑GGTGGAAAAGGCCGATGAAGGTTAGGACGTGGTAGGGCTTGTACCCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa < 2:534050/217‑1 (MQ=255) taCCCTTGAGGCCGATCTCAAGAATCCGCAAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATACTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACt < 1:6715/239‑1 (MQ=255) aCCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGCTGACGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGCCAGC‑T‑GGTTTCGTAAACCCGCTTCGAAGATGATTAACCGGCTTATTCACCGCACAACTGGCAACGCGAGGGGTGATTACGGTTGTATCATGCGCGCCTATCGCCGTCATATTGGCGGTGCGATGTTGTACt > 2:816636/1‑238 (MQ=255) aCCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACt > 1:271681/1‑238 (MQ=255) cccTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTg > 1:1039859/1‑238 (MQ=255) ttGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGCTTGTATGCTGCGCGCCTATCGCCGTCATATTGACGTTGCGATGATGCACTGCCAt > 2:1374266/1‑239 (MQ=255) tGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATg > 1:1192647/1‑239 (MQ=255) tGATGCCGATCCCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATg < 1:804880/239‑1 (MQ=255) gATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 2:502595/1‑239 (MQ=255) gATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 1:751975/1‑239 (MQ=255) gATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 1:749624/1‑239 (MQ=255) gATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 1:565222/1‑239 (MQ=255) gATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 1:1128689/1‑239 (MQ=255) gATCCCCAGAACCCGCCAG‑AAGAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag < 1:1444157/239‑1 (MQ=255) accccaaaaacccGCCAG‑AAAAAACC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag < 2:242535/227‑1 (MQ=255) gCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGa > 1:44678/1‑239 (MQ=255) cAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGAtt < 2:1039859/239‑1 (MQ=255) aag‑aagaAACC‑CCCCGCCG‑GGTGGCAAAAGCCGATGAAGGTTACGGGGGGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGAtt < 1:157679/238‑1 (MQ=255) tgtaaccaTC‑CCGCGCTG‑GGAGGAAAAATCCGATGAAGGTGTCGAAGGGTAAGGTACTGAAAGCAAGAACCTCCAGGACAGC‑T‑GGTTCCGTAAAACCGCTGCGAAGATGAATAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCAGGAACGCAGCACCTTTATCCCGATTc < 2:735655/232‑1 (MQ=255) | CAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTC‑ACGTTAC‑TGGCGAC‑TT‑AATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCT‑GGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGC‑T‑GGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTC > NC_000913/2367163‑2367627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |