| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,862,661 | T→G | 20.7% | pseudogene (942/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,661 | 0 | T | G | 20.7% | 93.5 / 3.6 | 67 | pseudogene (942/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (34/17); new base G (4/12); total (38/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862424‑3862888 | cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑Tg < 1:1213083/239‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAG‑GG‑TGC‑gggg > 1:207405/1‑238 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGa < 2:684848/239‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑TAG‑AG‑TGC‑gggg > 1:986196/1‑238 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATT‑AAG‑GT‑TG‑‑GGGAATCac > 2:248536/1‑238 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGGATCa > 1:185378/1‑238 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGCGGGGAATCacaaaccc > 1:502906/1‑231 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAG‑GT‑TGC‑GGGAATCA‑A‑C‑AAGcccc‑ccccctt > 2:1081795/1‑234 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GG‑TGC‑GGGGATCA‑G‑C‑AAACCCC‑CCA‑C‑TTTTT‑CCCgg > 1:1097435/1‑238 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGAAAATTCCAGCGGTTCGGTAACTCCCACCAGCATGGC‑GG‑GT‑AAGCGT‑TGG‑GGGaacaacaacccacccacattcacac > 2:244337/1‑214 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGTGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAACCCG‑CCA‑C‑tttttacccttttt > 1:109894/1‑229 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAA‑GT‑GGC‑GGGGATCA‑G‑C‑AACACCC‑CCC‑C‑TTTTT‑CCCCAttt > 1:773953/1‑238 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCACATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAACAACGGAGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GA‑AAA‑CT‑TGC‑AGGGACAA‑A‑C‑AAGCTCG‑CCC‑C‑ATTTA‑ACCCAtttt > 2:1040278/1‑239 (MQ=255) gaccttgggaacccAGTTGGGCGGAAACACGTAGTAAACCAGCCTCCCGCCCATGTGGCCCACCACCCAAAAGAGAAAAATCACGGTCGAAAGTGAGGCCACGAGCCGGGCGTGTCCCCCAAACAGCAACGTGAAAAAGAAGAGGAAGGAAAATCCCGGCGGTTGGGTAATCCCCCCCAGCAGGGC‑GG‑TT‑AAG‑GT‑GGG‑GGAAATAA‑G‑G‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTg < 2:366749/227‑1 (MQ=255) aaCGTCGGGATCCGTTTTTGCAGAAAACCCTAGCCAATCAGCCCCCCCCCCATGTCCCCCACCACACCAAAGAAATACATGCCGGTCGACATGGAGGCCGCCAGCACGGGGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGTTAAATCCCGGCGGTTGGGTAATCCCCCCAAGCTGGGG‑GG‑TT‑AAG‑GT‑TGG‑GGAAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTg < 2:835676/238‑1 (MQ=255) cgggcGGGATCCAGTTTCGCGAAAAACCCTACCAAACCAGCCCCCCCCCCATTGTCCCCCCCACACAAAAGAGATACATTACGGTCGACATGGAGGCCGCCGGCACGGCGTGACCCAAAAACAGCAACGGTGAAATGAACGGGAAGGAAAACCCCGGCGGTTCGGTAATCCCCACCAGAAGGGG‑GG‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTg < 2:639637/233‑1 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AAG‑GT‑GGG‑GGGAATAACG‑A‑AAGCGC‑‑CCC‑C‑TTTTA‑‑CCAATTTTCTGGTgggggcgag > 2:1249681/1‑234 (MQ=255) cattttgGCGGAAAAACATCGTAAACCACACCCCCCCCAATGTCCCCCACCACACAAAAGAAATACATCGGGGTCGACATTGAGCCCGCCAGCAGGGCGTGTCCCGCAAACAGCAGCGGTAAAAGGAAAGGGAAGGTAAATCCCAGCGGTTCGGTAACCCCCCCCAGCAGGGC‑GG‑TT‑AAG‑GT‑TGC‑GGAACTAA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTa < 2:207405/236‑1 (MQ=255) cagtttggtgaaaaaaCCTAACCAACCAGCCCCCCGCCCATGTCCCCCCCCACCCAAAATAGAAACATTCGGGTGTAAGTGGCGGCCACCAGCAGGGCGTGTGCCGAAAACAGAAAGGGTAAAAGGAACGGGATGATAAGTCCCAGCGGTGGGGAAATCCCCCCCAGTTTGCG‑GT‑TT‑AAG‑TT‑TGC‑GGAAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTa < 2:524086/227‑1 (MQ=255) aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TTC‑GGGGATCA‑G‑C‑AAGCCCC‑CCA‑C‑TTTTA‑CCCCATTTTTCTGTGCGGC‑AGTGAAGTAc > 1:762962/1‑239 (MQ=255) ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAAAG‑GT‑GGG‑GGGAAT‑A‑G‑C‑AAACCCG‑CCC‑C‑CTTTT‑CCCGATTTTCCGGTgggggcggggaggcg > 1:639637/1‑226 (MQ=255) tttgggcaaaaaaCCTATACACTCAGCCCCCCGCCCAGGTCCCCCCCCACCCAAAAGAGAAACATTACGCGCGAAATGGAGGCCGCCAGCAGGGGGTGTACCGAAAACAGAAACGGGAAAAGGAACAGGAGGTTAAATCCCGGCGGTGCGGTAATCCCCACCAGCATGGG‑GG‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACAt < 2:1041887/230‑1 (MQ=255) tttGGGATAAACCCGGGTCAACCCGACCCCCCCCCTTTTGCCCCCCCCCACAAAGGACATACTTTAGGGTGGACATGGAGGCCGCCAGCCCGGCGGGACCCCAAAACAGACACGGAGAAATGATAAGGAGGGAAAGTCCAAGCGGAGCGTTACTTCCCCCCGGCATGGG‑GT‑TT‑AGG‑GT‑GGG‑GGGAAGAA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTAc < 2:874743/236‑1 (MQ=255) tgcgggaaaaaCCTAGTAAACCAGCCCTCCGCCCATGTCGCCCCCCACACAAAAAAGATACATTACGGTGGAAATTGAGGCCGCCGGCCCGGCGTGAACCGAAACCACAAAGGGAGAAAGAAACAGGAAGTAAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGG‑GGAAAACA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCg < 2:1097435/232‑1 (MQ=255) aaaCCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GG‑TGT‑GGGGATCA‑G‑C‑AAAACCG‑CCC‑C‑TTTTT‑TCCGATTTTTCCGTGCGGC‑GGTGGAGGACATCGCTaaaaaa > 1:231935/1‑239 (MQ=255) tCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TT‑AAG‑GT‑TGG‑GGGAA‑CA‑A‑C‑AAAGCCC‑CCC‑C‑TTTTATCCCGTTTTTCCGGTGGGGC‑GGGAAAGAAC‑TCGCCAAAGAAAAGcccc > 2:316051/1‑237 (MQ=255) tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGG‑GGGGATCA‑G‑C‑AAGCCCC‑CCC‑C‑CTTTT‑CCCCATTTTCCGGGGCGGG‑AGGGGAGTACAACCCCTAAAAAAAGCCCCCGGc > 1:136869/1‑238 (MQ=255) tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑AAG‑GA‑TTC‑GGGGATCC‑G‑C‑ACACCCC‑CCC‑C‑CTTTA‑CCCCAATTTTCCGTGCGGC‑GGTGAATGACATCGCCAACAAAATGctcccgac > 2:517063/1‑231 (MQ=255) cAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGC‑GGGGATCA‑G‑C‑AAGCCCC‑CCC‑C‑TTTTA‑ACCGCTTTTCCGGGGGGGG‑AGTGAAGGACATCGCTAAAAAAATGCCCACGGCa > 1:968735/1‑238 (MQ=255) aCCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TTC‑GGGGAACA‑G‑CAAACCCCC‑CCC‑C‑TTTTA‑CCC‑ATTTTTCGGTGCGGC‑AGTGGAGTACATCGcctgtctcttttacccatcctcgg > 1:366214/1‑216 (MQ=255) cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAG‑GG‑TGC‑GGGGAACA‑G‑C‑AAACCCG‑CCC‑C‑TTTTT‑CCCCGTTTTTCGGTGCGGG‑CGGGGAGTACACCGCCAAAAAAAAGCCCCCCGGCCCCAAGAtt > 1:535343/1‑239 (MQ=255) gaaaaagaacaagccaaaaaGAGAAAAATGACGGTCGAAATGGAGGCCGCCAGCAGGCGGTGCCCCAAAAACAGAAACGGTAAAAAAAACAGAAGGAAAAATCCCGGCGGTTGGGTAATTCCCACCAGCATGGC‑GT‑TT‑AAG‑GT‑TGG‑GGAAATCA‑G‑C‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTg < 2:890572/221‑1 (MQ=255) tGTTGCCCACCACACCAAAGAAATACATTACGGACGACATTGAGGCCGCCAGCACGGCGTGTCCCGCAAACAGCAACGGTGAAATAAACAGGAAGGAAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GT‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑g < 1:1037355/239‑1 (MQ=255) ggtcccccACCACCCAAAAGAGATACATTACGGTCGACATGGAGGCCGCCAGCACGGGGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGATAAATTCCAGCGGTTCGGTAACTCCCACCAGCAGGGC‑GG‑TA‑AGG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTg < 1:1427858/232‑1 (MQ=255) accacaccaAGGAGCAACATTGCGGTAGGAATGGGGGCCGCCGGCACGGCGGGTCCCGCAAACAGCAACGGTAAAATGAAAAGGAAGGTAAATCCAAGGGGTTCGGTAATCCCCACCAGCAGGGC‑GT‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑g < 2:1098257/239‑1 (MQ=255) cacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GT‑TGC‑GGGGAACA‑G‑C‑AAGCCCC‑CCA‑C‑TTTTA‑CCCGATTTTTCGGGGGGGC‑GGGGAAGGAAAACGCTAAAAAAATGCCCACCGCACCACAGAATTTTGAGGTTACCGT‑ga > 1:1151775/1‑238 (MQ=255) accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCGCGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCCCCAGCAGGGC‑GG‑TT‑AAG‑GT‑GGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCAc < 1:44161/207‑1 (MQ=255) caAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGC‑GGGGATCC‑G‑C‑AAACCCG‑CCC‑C‑TTTTT‑CCCGCTTTTTCCGGGCGGC‑AGGGAGATACATCGCCAAAGAAACGGCCCCCGCACCCAAACTATTTTA‑GGTACCCT‑GCA‑gggga > 2:1030318/1‑237 (MQ=255) aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGGAGTACATCGCTAAAGAAATGCCCACGGCACCCAAGATTTTTGA‑GTTACCGT‑GCA‑CGG‑GA‑AAACCg > 2:770245/1‑238 (MQ=255) tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGC‑GGGGATCA‑G‑C‑AAACCCG‑CCC‑CTTTTTC‑CCCGTTTTTCCGG‑GCGGG‑AGGGGAGGAAACCGCCCAAAAAAAGCCCCCCGGCCCCAAGATTTTTTT‑GTTTCCCTGGCA‑GGG‑CA‑AAAccc > 1:696034/1‑237 (MQ=255) tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GG‑TGC‑GGGGATCA‑A‑C‑AAACCCC‑CCACC‑TTTTC‑CCCCTTTTTCCGG‑GGGGC‑AGTGGAGAACAACGCTAAAGAAAAACCCACCACACCAAAAAATTTTTG‑GTTAACGG‑Gcccgtttcttttaca > 1:890572/1‑225 (MQ=255) cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGC‑GGGGAACA‑G‑C‑AAACCCC‑CCC‑C‑TTTTA‑CCCCATTTTTCGGGGCGGG‑AGTGAAAGACAACGCCAAAAAAATGACCACGGCACCAAAAATTTTTTA‑GTTACCCT‑GCACGGG‑CA‑AAAcccct > 2:537825/1‑235 (MQ=255) cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AAG‑GT‑GCC‑GGGAACAA‑C‑C‑AAGCCC‑‑CCC‑C‑CTTTA‑TCCCATTTTTCGGGGCGGCGCGGAAAGAACAACCTCAAAAAAATCCCACCGGCCCCAAAAATTTTTTA‑GTTTCCGG‑GAG‑GGG‑AC‑AAACCCCCTTcccg > 2:491274/1‑237 (MQ=255) cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATG‑AAG‑GT‑TG‑‑GGGAATTA‑G‑G‑AAACCCC‑CCA‑C‑CTTTT‑CCCGATTTTTCCGGGGGGG‑AGTGGAGTAAAACGCTAAAAAAAAACCCACAGCACCAAAGAATTTTGA‑GATAACGT‑GGC‑AGG‑CA‑AAAACGCCTTCCggg > 2:1382028/1‑239 (MQ=255) gTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGG‑GGGGATCA‑G‑CAAAGCCCC‑CCC‑T‑TTTTA‑CCC‑ATTTTTCCGTGCGGC‑CGTGGAGGAAAACGCCAAAAAAAAGCCCCCCGCCCCCAAGAATTTTTA‑GGTACCGG‑GCA‑GGGCCA‑AAACCCCCTCCCGGGa > 1:1048976/1‑239 (MQ=255) gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAG‑GG‑TGC‑GGGAATCA‑A‑C‑AAAACCGCCCC‑C‑TTTTC‑CCCCATTTT‑CGGTGCGGG‑CGTGAAGGACAACCCTAAAAAAAAACCCACCGCACCCCAAATTTTTTA‑AGTAACGT‑TGA‑GGG‑CA‑AAACCCCCTCCCGGGaaaca > 2:1424731/1‑236 (MQ=255) gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAG‑GT‑TGC‑GGGGAACA‑G‑C‑AAGACCC‑CCA‑C‑CTTTT‑CCCGATTTTTCGGTGCGGC‑AGGGAAGTAACACGCTAAAGAAAAGCCCCCCGCACCAAAGATTTTTTA‑GGTAACGG‑GCC‑AGG‑GA‑AAACCCCCCTCCCGGaacaa > 2:234796/1‑239 (MQ=255) gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TTC‑GGGGAACA‑G‑C‑AAGCCCC‑CCA‑C‑ATTTA‑ACCGATTTTTCGGTGGGGC‑AGGGAAAGAAAATGCCAAAAAAAAGCCCCAGGCCCCAAAAATTTTTTG‑GTTCCCGG‑CCG‑GGG‑CA‑AAACCCCCTTCCGGGAAAAACAAttctaccg > 2:1072488/1‑232 (MQ=255) gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGT‑GGGAATCA‑GAA‑AAGCCCC‑CCC‑C‑TTTAC‑CCCCATTTTCCGG‑GCGGG‑GGGGAAGGACAACGCCAAAAAAAAGCCCCCCGCACCCAAAATTTTTTG‑GTTATCCT‑GTA‑TGG‑CACAAAACCCCTCCCGGGagaaaaatttataccg > 2:402350/1‑224 (MQ=255) caaaaCAGCAAGGGTGAAATGAACAGGAAGGAAAATCCCGGCGGTTCGGAAATTCCCACCAGCATGGC‑GG‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:994202/237‑1 (MQ=255) aaaaaCAGCAGCGGTGAAATGAACAGGAAGGTAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGG‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:1438721/237‑1 (MQ=255) cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GT‑TTC‑GGGGATTA‑A‑C‑AAACCCC‑CCC‑C‑CTTTT‑CCCGGTTTTTCGGTGCGGC‑AGGGAAGTAAATCGCCACAAAAAAACCCCCAGCACCAAACACTTTTTA‑GTTACCCC‑TCA‑GAG‑CA‑AAACCGCCTGCCCGGGACAACCAATTTAGCGGAGCGGCGCtacacactca > 2:1386523/1‑229 (MQ=255) aaaGCAACGGTAAAAGGAACATGAAGGTAATTCCCAGCGGTCCGGAATCCCCCCCCAGCGTGGG‑GG‑TT‑AAG‑GT‑GGG‑GGAAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAActct < 2:136869/237‑1 (MQ=255) aaCGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TTC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCCCCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCCCCAACTGAACTCTTGccg > 1:309975/1‑237 (MQ=255) cGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGACCC‑CCC‑C‑CTTTA‑CCCGATTTTCCGGTGCGGC‑CGGGAAGTACATCGCTCAAGAAATTCCCACGGCACCCAAGATTTTTTA‑GGTAACCC‑GCA‑GGG‑GA‑AAAACGCCTTCCGGGAAAAACGATTTCCACGGCCCGGAGCCCAAACAGaaacacttcagat > 2:446498/1‑228 (MQ=255) gaaaagacagggagtgaaatctCCAGCGGTAGGGTAA‑TCCCCCCCGCCGGGG‑GG‑TT‑AAG‑GTGTGC‑GGAAACAA‑A‑A‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 2:968735/217‑1 (MQ=255) aaaagaaaGGAAAATCCCGGCGGTCGGGAAATTCCCCCCAGCATGGC‑GT‑TA‑AGG‑GG‑TGC‑GGGAACCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:530942/231‑1 (MQ=255) aaaagaaaGGAAAATACCAGCGTTTGGTAAATCCCCACCAGCAGGGG‑GG‑TT‑AGG‑GT‑GGG‑GGAAAACA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 2:1419186/231‑1 (MQ=255) aaaaGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GA‑TT‑AGG‑GT‑GGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:770245/234‑1 (MQ=255) agaggatgtaaaaTCCCAGCGGTACGGTACTCCCCACCGGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGAAAGCA‑G‑C‑AGGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:780352/229‑1 (MQ=255) aCAGGAAGTTAAAGTCCAGCGGTTCGTTAATCCCCCCCAGCATGGC‑GG‑TT‑AAG‑GG‑TGC‑GGGAATAA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:650117/239‑1 (MQ=255) gAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAA‑GT‑TGC‑GGGAATCA‑G‑C‑AAACCCC‑CCC‑C‑TTTTT‑CCCCATTTTCCGGTGCGGC‑CGTGAAGTACATCGCTAAAAAAATTCCCACGGCACCAAAAATTTTTTA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACCACGATTTCAGCGGCTCCGCGCTCCAACTTAAATCCTGCAGATGCTCTGccccctac > 2:530942/1‑233 (MQ=255) ggtttggttAATCCCCCCCAGCAGGGC‑GG‑TT‑AGG‑GT‑TGC‑GGAAAACA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCt < 1:316051/230‑1 (MQ=255) actccaccaagaggggC‑GG‑TA‑AGG‑GT‑GGC‑GGAAACAA‑G‑C‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGc < 2:696034/225‑1 (MQ=255) caccaGAATGGC‑GG‑TA‑AAG‑GT‑GGG‑GGGAATCA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:9660/239‑1 (MQ=255) cacaaGGATGGG‑GG‑TT‑ACG‑CG‑TGT‑GGGAATGC‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTGCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATTCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACATCTGCCGGAc < 2:107189/239‑1 (MQ=255) ggg‑TT‑AGG‑GT‑TGG‑GAGAAGCA‑G‑C‑AGGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:84386/237‑1 (MQ=255) | CCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862424‑3862888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |