| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288917 = | NA (NA) | 45 (0.890) | 36/282 | 0.4 | 91.8% | intergenic (‑5/+146) | yejO/insH1 | pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator |
| ? | NC_000913 | 3553101 = | 4 (0.080) | coding (19/2706 nt) | malT | mal regulon transcriptional activator | |||||
AATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2289042‑2288917‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGCGG > NC_000913/3553101‑3553242 AATGACGAAGCAACGGTCTAAATAGGCTGATTCAAGGCACCTACGGGAGAAAAAAGCGGCTCAAACATGCCGAAATGAAATGACTGAGCCAGCCGAGAAGAATTTTCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCG < 2:815993/143‑1 TGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCGCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCGCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGAC > 2:793119/1‑143 GGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACT < 2:351136/143‑1 GAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGA < 2:459269/143‑1 GAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCA < 1:567371/143‑1 AACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATA > 2:437553/1‑143 TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTG < 2:473314/143‑1 AAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGGGGTT > 2:6881/1‑143 AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTC < 2:410853/143‑1 GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGCCCATCCCGTGGTTCGcggg > 2:394580/1‑139 GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGCCCATACCGTCGTTCGTGAG > 2:765959/1‑143 AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGGAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTACCTAAGTCGTCCGGTGCGACTCGACCATACCGTGGTTCGCGACCGCCTGCg > 1:433799/1‑142 AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGCGCGCCTGCT > 2:44755/1‑143 AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTAGCACCTTCCCTAAGTCGTCCGGTTCGACTAGACCATACCGTGGTTCGTGAGCGACTGCT > 1:66887/1‑143 GGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGG < 1:453725/143‑1 GGCAGTTAGGGGACAAAAGATCGGCGCAAACATGAAGAGAGGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCAGACCGTGGTTCGTGAGCGCCTGCTGG < 1:613624/143‑1 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGACTTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGCTTCGACTCGACCATCCCCGCGTTCGTGAGCGCGCGCTGGCTAA > 1:872533/1‑143 GGGAGAAACAGTCGGCGCACACATGAAGAAAGGAAATGGCTGAGTCAGCCGAGAAGATTTTCCCCGCTTATTCGCACCTCCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAACCTTT < 2:134798/143‑1 AGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTCTTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCG > 1:152492/1‑143 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAAC > 2:492146/1‑143 TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAGCTT > 2:749340/1‑143 TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAAata > 1:384333/1‑140 CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGGCCAACTTC > 2:111950/1‑143 CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTC > 1:177743/1‑143 AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCACGCTTATTCGCACCTTCGCTACGTCGTTCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTGCGGCGCGAAacagttcc > 1:354112/1‑135 ATGAAGAAATGAAATGACTGAGTCAGCCGACCAGAATTACCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAGCTTTCCGGCGCGGACGACTTCCGGCg > 2:698730/1‑142 AAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTGCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCA < 2:522226/143‑1 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGA < 1:20266/143‑1 TGACTGAGGCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGA < 2:618735/143‑1 ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGT < 1:646886/143‑1 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTACACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCcagaggc > 2:819663/1‑136 tAGAAGTATTGCCTTGCTTATTCGTATCTTCCCTAAGTCGTACGGTTCGACTCGA‑CATACCGTGGTTCGTGAGCGCCTGCTTGCTAAACTTTCCGGCGTGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACG < 1:224015/142‑1 AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTACACTTTCCGGCGCGCACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCCGCCTACGGA > 1:208265/1‑143 AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGA > 2:391694/1‑143 tatgTCCCCGCTTCTTCGCCCCTGCCCCAAGTCGTCCGGTTCTACTCGACCATCCCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAG < 1:873866/139‑1 AATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAG < 1:437553/143‑1 AATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGCGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCCACGGAAAG > 1:14098/1‑143 CCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGCTCGTGAGCGCCTGCTGGCTAAACTTTCCGCCGCGAACACCTTCCGGCTGGCGCTGATCACGACTCCTGGGGGCTACGGACAGACCcca > 1:1750/1‑140 CCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGACCAACTTCCGGCTGGCGCCGATCACGAGTCCTGCGGGCTACAGAAAGACaaacc > 2:226494/1‑138 CGCTTATTCGCACCTTCCCTAAGTCGTCCGTGTCGACTCTGCCATACCGTGGTGCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCCGCGGGCTACGGAAAGACCACCCT > 2:416231/1‑143 GCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCGGCGGGCTACGGAAAGACCACCCTC > 1:687146/1‑143 CTTATTCGCACCTTCCCTAAGTCGCCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCA < 2:830941/143‑1 CACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAG > 1:501380/1‑143 ACCTTCCCTAAGTCGTCCGTTGCGACGTGTCTATACCGTGCTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGT < 1:157947/143‑1 CCTAAGTCGTCCGGTTCGACTCGACCATACTGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGCGCTACGGCAAGACCACCCTCACTCCCCCGCGGGCcg > 1:106930/1‑141 AATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2289042‑2288917‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGCGG > NC_000913/3553101‑3553242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |