New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	44 (0.870)	7 (0.160)	6/250	5.4	12.5%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	59 (1.310)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGG  >  NC_000913/1207664‑1207941                                                                                                                                              |                                                                                                                                         gggCCAACCTCCAGAAGGGGCCGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                         <  1:858014/141‑1 (MQ=255)    ccAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATTTCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGGAGGAGCa                                                                                                                                      >  2:554524/1‑143 (MQ=255)     cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTTGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa                                                                                                                                     <  2:86513/143‑1 (MQ=255)      aGCCTGGAGAAGGGGCGTCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgc                                                                                                                                    <  2:783486/143‑7 (MQ=255)      aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAGTCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa                                                                                                                                    <  1:592742/143‑1 (MQ=255)              gaAGGGGCGGCACCACCAGTTACTTACCGCACTTCGCGCGCTGCTCTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGCTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAACCTCAATg                                                                                                                            <  2:612421/143‑1 (MQ=18)               aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGACGAGGAAATCTCAATgc                                                                                                                           >  2:549594/1‑143 (MQ=255)                aGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                                          <  2:63676/143‑1 (MQ=255)                  gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTATGGGAGAAGGAGCAAAAGTCAATgcagc                                                                                                                        >  1:429312/1‑143 (MQ=255)                    gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                      >  2:775118/1‑143 (MQ=255)                       gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTACATGCAGCCACgg                                                                                                                   >  1:783900/1‑143 (MQ=255)                       gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGACAACCCTGGGTTGGGCGCAGCGGCAACACTCACTacagcaccac                                                                                                                   >  1:621700/1‑139 (MQ=17)                       gcACGACCAGTTACTTACCGCACTGCGGGCGCTGCTGTTAAGGCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                                   <  1:379098/143‑1 (MQ=255)                           tttttttttcttacCGAACGGCGCGCGCAGCTGGTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                               <  2:10668/134‑1 (MQ=21)                                           gaggtCGCGCGTGGCGGGTAAGCCGCAAGACTCCGTGTGGCGATATCAAATCGGATGGCACTGTGCTAACGGCTCTCGAAAACCTTGGTTTGAGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCTGt                                                                                               <  1:850728/139‑1 (MQ=25)                                                 gcgcggTGCTGGGAAGGCGCAAGAATCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                         <  1:557289/143‑1 (MQ=25)                                                   gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGAGCAAAACTCAATGCAGCAAAGGCGACATTAGGACGGAACGGGTTCATacc                                                                                       >  1:579437/1‑141 (MQ=21)                                                           gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                               >  2:510985/1‑143 (MQ=255)                                                                gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAACGGCTAAATTAGGACGAACCGGTTTCATAGCTATACAGGTCATg                                                                          >  2:293830/1‑143 (MQ=25)                                                                            cGTTTGGCGATATCCAAGCGGATGGCACGGTGCAAACGGCGCTCGAAAGCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                              <  2:464816/143‑1 (MQ=255)                                                                             gtgtGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACGGCGACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGATTGGTGGTATTg                                                             <  1:188058/140‑1 (MQ=38)                                                                              tgtGGCGATATGAGATCGGATGGCACTGAGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGAGCAAAACGCAATGCAGCAGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                            <  2:179917/141‑1 (MQ=255)                                                                               tgggCGATATCAGATCGGCGGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCCACACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                           <  1:145816/141‑1 (MQ=38)                                                                                 ggCGATATCGAAGCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa                                                         <  2:22625/143‑1 (MQ=255)                                                                                   ggATATCAACTGGGGTGGCACGGGGCGAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                       <  1:799090/142‑1 (MQ=38)                                                                                         cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                 <  2:136718/143‑1 (MQ=255)                                                                                            accgtttGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGATAAAAGAAGGAGTAAAGCTAATTTTCTCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                              <  2:605145/137‑1 (MQ=255)                                                                                            aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                              >  1:814503/1‑143 (MQ=255)                                                                                               ggATGGCAGTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTc                                           <  2:579437/143‑1 (MQ=255)                                                                                                gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTcc                                          >  1:519185/1‑142 (MQ=255)                                                                                                   ggCACTGTGCAAGCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                       <  1:358473/143‑1 (MQ=255)                                                                                                     cACTGCGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCGATACCGGTTATGACTGGTGGTATTGAGCAATCAGTAATCACTCAGTggg                                     >  1:738446/1‑143 (MQ=255)                                                                                                      aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGCgggg                                    >  1:427297/1‑143 (MQ=255)                                                                                                            cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGGTTGGTGGTATTGTGCAATCAGTAATCATTCCGTGTGGGTGGaa                              >  2:429488/1‑143 (MQ=255)                                                                                                                cagCTCTCGACAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                          <  1:375841/141‑1 (MQ=255)                                                                                                                  cctctGGAGAACCTTCGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                        <  1:114674/142‑1 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCTGTGGGGGTGGAATGCCGCaaaa                    >  2:522293/1‑143 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                    >  2:525112/1‑143 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTACTGAGCAATCAGTAATCATTCAGTGGGGGGGGAATGCCGCaaaa                    >  1:593479/1‑143 (MQ=255)                                                                                                                      gcGAACACCGTGGTCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGCACGCACCGGTTTCATAGCGATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                    <  2:806665/142‑1 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                  >  2:799924/1‑143 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                  <  2:864423/143‑1 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGATATACCGGTTATGATTGGTGGTAGTGAGCAATCAATAATCACTCAGCGGGGGTGGAAGCCAGCAAAAGc                  >  1:214593/1‑143 (MQ=255)                                                                                                                              attcatttGGGAGAAGGAGCAAAACTCCATGCGGCAACGGATACATTAGGACGCACCAGGTTCATAGCTATACCGGATTTGATTGGTGGTATTGGGCAATCAATAATCATCCAGTGGGGGTAGAATCACGCAGAAGCATCTgt            >  1:190771/6‑142 (MQ=255)                                                                                                                                        gagaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg  >  2:439833/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                         GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGG  >  NC_000913/1207664‑1207941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.