| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 40 (0.790) | 31/282 | 0.7 | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA > NC_000913/2289970‑2290253 | aaGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCa > 2:884245/1‑143 (MQ=11) aaaTCTCTTTTCTGGTCTGACGGCGCTTCCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAAc < 1:612498/143‑1 (MQ=18) tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGA‑CTTGTCAGCCCCTTGTATAACGCTGt > 1:96617/1‑143 (MQ=11) tcgtttCTGGTCTGACGGCGCTTACTGCTGGATTCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAAAGATGt < 1:155065/140‑1 (MQ=11) tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCGATAACGCTGTAGc > 2:788407/1‑143 (MQ=38) tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGCA‑CTTGTTCTCACCTTCCATAACGCTGTAGc > 2:506937/1‑143 (MQ=255) ttgtGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGcc < 2:802562/140‑1 (MQ=255) tCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGA‑CTTGGTGGCACCTTCCATAACGGGGTAgggc > 1:658783/1‑140 (MQ=11) cTGACGGTGCTTACGGCTGAATTCACTGTGGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGaa < 1:781579/143‑1 (MQ=255) tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTGGATGACTCATGATGAACCCTGTTCTATGGCTGCAGATGACAAACATGCTCTCATATCAGAGA‑CCTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAAc > 1:67120/1‑143 (MQ=14) tGACGGCGCGTACTGCTGGATTCGGTGTCGGCGGTGGTGTGTTGATGGCTGATGGTGTTTCTTGTTCTGTGGCTCCAGATGACAAACATGATCTCATATCAGGGT‑CTTCTTAGCACCTTCCATAACGCTGTAGCCACCAGAAc < 1:226043/143‑1 (MQ=12) ttACTGCTGAATGCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATCGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGc < 1:737247/143‑1 (MQ=255) tACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg < 2:636660/143‑1 (MQ=255) tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACCTGATCTCAGATCAGCGC‑CTACTTCGCACCTTCCATAACGCTGTAGCCCCCAGAACCGATATTGCGGaa > 1:666348/1‑143 (MQ=17) ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCCTCCATAACGCTGTAGCCACCAGAACAGATATCGCGGAACg > 1:707567/1‑143 (MQ=255) tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGACCAGATATTGCGGAACgc > 2:671301/1‑142 (MQ=255) ttCACTGTCGGCTAAGGTAAGTTGATGCCTCATGCTCAACCCATTCCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa < 2:602413/143‑1 (MQ=18) aCTGTCGGCGAAGGTAAGTTGATGACACATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAGGATCACATGTCAGGGA‑CTTGTTCGCAACGAACAAAACGCCGTAGCCACCAGAATAGATATTCCGACACGACAAacag > 1:391342/1‑143 (MQ=14) tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATCACGCTGTAGCCACCAGAACAGCTAGTGCGGAACGACAAAGAGaa > 1:792787/1‑143 (MQ=255) gggggCGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa < 1:170687/140‑1 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGcc > 2:239260/1‑108 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGcc < 1:239260/108‑1 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAAc > 1:118511/1‑143 (MQ=255) cGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa < 1:401484/143‑1 (MQ=255) gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCGCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACCAAGAGCGACAGACCCAGa > 2:109625/1‑143 (MQ=21) gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGa > 2:634066/1‑143 (MQ=255) gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGa > 1:23670/1‑143 (MQ=255) atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCa > 2:80538/1‑143 (MQ=255) cTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGa < 2:743695/143‑1 (MQ=255) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACCAAGAGAAACAGAACCAGATTGATGCATTGAg > 1:69161/1‑143 (MQ=255) atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGAACGACAAGGAGAAACAGAACCAGATTGATGCATTGAGCt > 2:378093/1‑143 (MQ=255) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACGAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCt > 1:767872/1‑143 (MQ=255) tATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatt > 1:718789/1‑143 (MQ=255) aTGGCTCCAGATGACAAACATGATCACATATGAGGGA‑GGTGTTCGCACCTTACATCACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGACACAGAACCAGGTTGATGCAGTGAGCTTTCATCCTACGAaattc > 1:58673/1‑142 (MQ=37) ggCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaat < 2:369751/143‑1 (MQ=255) ccAGAAGACAATCGTGATCTCATATCAGCGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGAACGACAAAGAGAAACAGAACCAGCTTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt < 1:332069/143‑1 (MQ=255) cAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCCGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTg < 2:645638/143‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGtt > 2:425709/1‑143 (MQ=255) tGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 2:534539/1‑143 (MQ=255) atgaaCACGAACTCATACCAAGAATCTTG‑TCGTACCTTACATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 1:711241/140‑1 (MQ=255) aCAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 2:668473/143‑1 (MQ=255) aaaCATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc > 2:755353/1‑143 (MQ=255) aaaCATGATCTCATATCAGGGA‑CTTGTTCGCACCCCCCCCCACCCCGTAGCCACCAGAACAGATACTGCCCCACGACAAAGAGAAACAGCACCACATCGATGCATCCAGCTTTCAGCCTACGAAATTAATTCCTCTTACAAGc > 1:486828/1‑143 (MQ=19) aaaCATGATCTCATATCAGGGA‑CTTGGTCGTGTTAGTCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTCAAAAGc > 1:316237/1‑143 (MQ=255) aaaCATGATCTCATATCAGGGA‑CTGGTACAGAACAAGGTAAAGGTTGTAGGCACCAGAACAGATATGGCGGAAGTGGAGAGATTGACGGGACCAGATGGATGGATTGAGCTTTCGTCCTGTGAAATTAATCGCTGGTAAAAGc > 1:357913/1‑143 (MQ=255) tcATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa > 1:78291/1‑143 (MQ=255) tCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTAGGAAATTAATTGCTGGTAAAAGCATTGGGGACAGaaaa > 2:418648/1‑143 (MQ=255) cAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAAt > 1:755305/1‑143 (MQ=255) aGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATa > 1:832385/1‑143 (MQ=255) ttGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATa > 2:743726/1‑143 (MQ=255) ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACCGAACCAGATTGATGCATTGAGCTTTCATCCTATCAAATTAATTGCTGTTAAACGCATTGGGCACAGACGATACCCATAGCt > 1:608904/1‑143 (MQ=255) ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCt > 2:374765/1‑143 (MQ=255) tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATAATGCGAAAAGACCAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAACCTAGGAAAATAATTGCTGTCAAAAGCATTGGGGACAGAAAATACCAAGAGCta > 1:351926/1‑142 (MQ=255) aCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATa > 1:694069/1‑143 (MQ=255) ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAGCCTATGAAATTAATGGCTGTTAAAAGCATTGGGTACAGAAAAGACCCATCGCTCCATaa > 2:781743/1‑142 (MQ=255) cATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGa < 2:536517/143‑1 (MQ=255) | AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA > NC_000913/2289970‑2290253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |