| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 368554 | 61 (1.040) | 4 (0.070) | 4/270 | 8.2 | 6.4% | intergenic (‑134/‑57) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| ? | NC_000913 | = 368583 | 59 (1.060) | intergenic (‑163/‑28) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCATATTAATTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGAT > NC_000913/368415‑368696 | cTGCATATTAATTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAg > 2:585096/1‑143 (MQ=255) tcgcaagtgccATGTCAATAGGTAAAACACCGTGGGGCGCGTGGTGCACATTC‑GGGCATGTCTTGATTGTAGCCGAAAACTCCCTTCCTATACTGCGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTgcg < 2:807171/133‑1 (MQ=255) aaTTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTGGCGCTGt > 2:166014/1‑143 (MQ=255) tGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTGCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACt > 2:555889/1‑143 (MQ=255) aTTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTgc > 2:846193/1‑143 (MQ=255) tttCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGAGTGTAGCAGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCGGTACTGTgcg > 2:811724/1‑143 (MQ=255) ttCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTgcgc > 2:766199/1‑143 (MQ=255) ttCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTacgc > 1:512980/1‑143 (MQ=255) ataGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCaa < 1:945195/143‑1 (MQ=255) aacaacGTGGTGCACCTGGTGCAGATTCAGGACAACAAAT‑ATTGTAGCCGAAAACACCCTTCCTATACTCGGCTCACGTGGAAAGGTCATTGACGTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACAttt > 1:407777/1‑143 (MQ=255) aacaacGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACAGGTTTTTACCAAAATAAGTTGCGCTTTCCTGTGCGCGCACCGCCtttt > 2:298354/1‑143 (MQ=255) gaatgtgCACCAGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACCTGATCCGTTGCGCTGTACTGTCCGCGCAACGACGTTTTGTcc > 2:448549/5‑143 (MQ=255) tggtgCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGa < 2:169014/143‑1 (MQ=255) gTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTa < 2:616750/143‑1 (MQ=255) tGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTAc < 2:213419/143‑1 (MQ=255) tGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTAc < 2:106253/143‑1 (MQ=255) gCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACt > 2:74229/1‑143 (MQ=255) c‑GGCCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAATTAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATgg < 1:453774/143‑1 (MQ=255) cATGTGTTGATGGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAAt < 2:839124/143‑1 (MQ=255) tttGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATacaac < 2:585481/143‑1 (MQ=255) ttGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATacaaca > 2:561313/1‑143 (MQ=255) tGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCCATACAacac > 2:928320/1‑143 (MQ=255) gATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACAcc < 1:585096/143‑1 (MQ=255) aTTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAAATACTGAAAAGGCAATACTACAccc > 1:54464/1‑143 (MQ=255) ttGTAGCCGCAACCCACCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt < 1:724318/143‑1 (MQ=255) ttGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt < 2:602475/143‑1 (MQ=255) ttGTAGCCGAAAACACCCGTCCTATACTTAGAGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATGTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt < 1:944679/143‑1 (MQ=255) tGTAGCCGAAAACCCCCTTCCTATACTGGGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTg < 2:122640/143‑1 (MQ=255) aGCCGAAAACACCCTTCCCATACTGAGCGCAAAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACa < 1:520529/143‑1 (MQ=255) ccGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACCTc > 2:705169/1‑143 (MQ=255) cGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATcc > 1:148208/1‑143 (MQ=255) gacacCCTTCCTCTACCGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCCACACGTGCGGTCAAGTAATGGCAATACAACACCCTGACATCCAGcc < 2:239659/142‑1 (MQ=255) ccTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCctgctg < 2:719017/143‑1 (MQ=255) cTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGt < 1:341068/143‑1 (MQ=255) cTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCCGCTGt > 2:626797/1‑143 (MQ=255) tCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTa < 1:413793/143‑1 (MQ=255) ccTATACTGAGCGCACAATAAAAAATCATATACACATCACTTACATGAGAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGCACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCCGCTaa > 1:992818/1‑143 (MQ=255) tataCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTGGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGACAATACAACAACCTGACATCCAGCCTGCTGTTAAcc > 1:573851/1‑143 (MQ=255) aCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCTCGCAACGACATTTTGTCCGAGGCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATa < 1:180517/143‑1 (MQ=255) aCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATa < 2:574414/143‑1 (MQ=255) tGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGc > 1:768681/1‑143 (MQ=255) cgcACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGAGTTc > 2:896898/1‑143 (MQ=255) caATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACACTTTGTCCGAGTCGTGCGGTACTGCCATGGCACTACACCACCCTGACATCCAGCCTGCTGTTAACCATAGCGGTGAGGt > 2:208317/1‑143 (MQ=255) aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCTGAGTCGTGAGGTACTGAAATGGCAATACAACACCCGGACATCCAGCGTGCTGTTAACCATAGCGTTCAGGTg > 1:541606/1‑143 (MQ=255) aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCCTCGCGTTCCGGTg > 2:189775/1‑143 (MQ=255) aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTg > 2:823457/1‑143 (MQ=255) aTAAAAAATCATTTACAGGTGTTGAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGCgg < 1:413374/143‑1 (MQ=255) aaaaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCg > 2:901082/1‑143 (MQ=255) aaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTAGTCGGAGTCGTGAGGTACTGAAATGGCAATACAACACCGTGACATCCAGCCTGCTGTTAACCAAAGCGATCGGGGGGCGag > 1:293987/1‑142 (MQ=255) cATTTACACGTCTCTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACTACACTTTCTCCGCGCCTTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTg < 2:376116/143‑1 (MQ=255) aTTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACGACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTgg < 2:148208/143‑1 (MQ=255) tttACTTGTCTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACCTTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGt < 2:847338/143‑1 (MQ=255) tttACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCGGGTGGCGCTCggcggt > 2:780946/1‑138 (MQ=255) tACATGTTTTTAACAAAATACTTTGCGCTGTACTGTTCGCGCAACGACATTTTCTCCGAGTCTTGACGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGc < 1:53275/143‑1 (MQ=255) aTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCgg > 2:69139/1‑143 (MQ=255) cAAAATGAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACCTCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 1:226712/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 1:148874/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 2:283138/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 2:324226/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACAATTTGTCCGAGTCGTGAGGTACTGAAATGGCAAGACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGGTgcg > 2:837016/1‑141 (MQ=255) tAAGTTGCGCTGTACTGTGCGCGCAACGACAATTCGTGCGAGGCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCtgat < 2:512980/143‑1 (MQ=255) | CTGCATATTAATTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGAT > NC_000913/368415‑368696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |