Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979270 1979278 9–776 52 [0] [0] 52 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)48 (0.870) 37/268 0.5 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/1978360‑1978644
                                                                                                                                              |                                                                                                                                              
tGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGCCGCAACTGTACTCGTCACTCCACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAGTGCGTGATGCAGATCACACACAACACTCAATTACTTAACATAAATG                                                                                                                                                >  2:326167‑M1/1‑143 (MQ=255)
    tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                            >  1:616198‑M1/1‑139 (MQ=255)
    tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                            <  2:65066‑M1/143‑5 (MQ=255)
     ctgtacaCTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                           <  1:442384‑M1/140‑6 (MQ=255)
           gctgatccaAGACTTCTGCTAAAGCGAGGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCGTTGCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                     <  1:323417‑M1/139‑12 (MQ=255)
           acctatcTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACTGAGGTGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                     <  1:620204‑M1/140‑12 (MQ=255)
           acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                     >  2:551330‑M1/1‑132 (MQ=255)
                      agttttccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGAGGGAGGGATGTGCAAGAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                          <  2:467853‑M1/141‑23 (MQ=255)
                       tttttCCTACATCGACGCCACTGTACTCGTCACTACACGCACATACAGCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                         <  2:120884‑M1/143‑24 (MQ=255)
                       tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCCGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                         <  2:331549‑M1/143‑24 (MQ=255)
                             cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                                                                                                   >  2:397627‑M1/1‑114 (MQ=255)
                             cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttgtgttatgggtgtat                                                                                                                   >  1:731673‑M1/1‑114 (MQ=255)
                              tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAACACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                                                                                                  >  1:103875‑M1/1‑113 (MQ=255)
                                         aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                       >  2:334658‑M1/1‑102 (MQ=255)
                                             gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                   <  2:564918‑M1/143‑46 (MQ=255)
                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcagactattgttttgggtgtatttcaatctgttaaaaagttt                                                                                               >  1:522489‑M1/1‑94 (MQ=255)
                                                   gTCACTGCACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACACACATTGCCATCAATCCCTCACCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                             <  2:469653‑M1/143‑52 (MQ=255)
                                                      aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatatgttaaaaagtttttcgc                                                                                          >  2:14973‑M1/1‑89 (MQ=255)
                                                        tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgata                                                                                        >  2:206319‑M1/1‑87 (MQ=255)
                                                          cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                      <  2:451070‑M1/143‑59 (MQ=255)
                                                              cacaTACAACGTAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag                                                                                  <  1:369113‑M1/143‑63 (MQ=255)
                                                               acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                 <  2:766755‑M1/143‑64 (MQ=255)
                                                                 aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtagaagtcaaacttttgtattgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                               >  1:761077‑M1/1‑78 (MQ=255)
                                                                      aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                                                                          >  2:901309‑M1/1‑73 (MQ=255)
                                                                        ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                        <  2:174461‑M1/143‑73 (MQ=255)
                                                                          aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                      >  2:334445‑M1/1‑69 (MQ=255)
                                                                               ggCTGCGTGTGTCAATAATGCGTGATGCCGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                 <  1:632798‑M1/143‑80 (MQ=255)
                                                                               ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaaatttttcgctacgctagcaagcaaaaatcaacaa                                                                 >  1:594833‑M1/1‑64 (MQ=255)
                                                                               ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttaggtgtatttcaatctgttaaaaagtttttcgctaagctagcatgcaaaaatgaaaca                                                                 >  1:595247‑M1/1‑64 (MQ=255)
                                                                                gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                <  1:222203‑M1/143‑81 (MQ=255)
                                                                                gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgagtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                <  1:276697‑M1/143‑81 (MQ=255)
                                                                                 cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggatgtatttcaatctggtaaaaagttcttcgccacgctagccagcaaaacggcaacaag                                                               >  1:336008‑M1/1‑62 (MQ=255)
                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                              <  1:274690‑M1/143‑83 (MQ=255)
                                                                                    cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                                                            >  2:102544‑M1/1‑59 (MQ=255)
                                                                                            aatactCCGTGATGCAGCTCACACAAAACACACAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                    <  2:350949‑M1/143‑93 (MQ=255)
                                                                                            aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                    <  2:62163‑M1/143‑93 (MQ=255)
                                                                                                 tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                               <  2:616198‑M1/143‑98 (MQ=255)
                                                                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatccgtactctcctagttttgggtgtatttctaacagttaaaaagtttttcgctacgtcagcaagcaaaaatgaaacaggaataatcgaaatgggat                                              >  2:470160‑M1/1‑45 (MQ=255)
                                                                                                    gTGATGCAGATCACACAAAAAACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt                                            >  1:811335‑M1/1‑43 (MQ=255)
                                                                                                            gATCACAGAAATCGCGCAATTAGTGAACATAAATGtataagtcatactgttgttttgggtgtatttcaatctgtgaaaaaggttttcgctacgcgagcaagcaaaaatgaaacaggaataatcgaaatgggatgtggcgcaca                                    <  1:644213‑M1/143‑109 (MQ=255)
                                                                                                                acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                >  2:321708‑M1/1‑31 (MQ=255)
                                                                                                                acacaAAACACTCAATTACTTAACATAAATGtataagtcatactcttgttttgggtatatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                >  1:230139‑M1/1‑31 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                              >  2:30599‑M1/1‑29 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                              >  1:339343‑M1/1‑29 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                              >  2:642268‑M1/1‑29 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatctgttaaaaagtttttcgctacgctagcaagcaaaaataaaacaggaataatcgaaatagtatgttacgcacagtcaac                              >  1:333671‑M1/1‑29 (MQ=255)
                                                                                                                    aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatatcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataaacgaaatgggaagttgaccacaatcaaaat                            >  1:421362‑M1/1‑27 (MQ=255)
                                                                                                                      aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggattttgcgcacagtaaaaataa                          >  1:352458‑M1/1‑25 (MQ=255)
                                                                                                                                      aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc          >  1:543162‑M1/1‑9 (MQ=255)
                                                                                                                                        aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttgtttactactctcgaatgccaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat        >  1:214276‑M1/1‑7 (MQ=255)
                                                                                                                                              gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta  >  2:736413‑M1/1‑1 (MQ=255)
                                                                                                                                              gtataagtaatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta  <  1:743177‑M1/143‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/1978360‑1978644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: