Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 56 [0] [2] 58 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)52 (0.960) 45/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815798‑3816079
                                                                                                                                              |                                                                                                                                             
acacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                               <  1:151065‑M2/1‑1 (MQ=255)
acacctgctcgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                               <  1:786690‑M2/1‑1 (MQ=255)
 cacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCg                                                                                                                                              >  2:306966‑M2/142‑143 (MQ=255)
      gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaataagtttgccagcgccgcctactgcCGTcccc                                                                                                                                         >  1:95882‑M2/137‑143 (MQ=255)
        gtgctaagcgcaaatccaataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                       <  2:597497‑M2/9‑1 (MQ=255)
                cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                             >  2:25833‑M2/127‑143 (MQ=255)
                cgcaaatgcaatganctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                             <  2:832988‑M2/17‑1 (MQ=255)
                cgaaaagtaaataagctggcgcggagatggtgtcatgccttggctccgcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccgtaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                             <  2:855868‑M2/17‑1 (MQ=255)
                    aattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                         >  1:512338‑M2/123‑143 (MQ=255)
                         aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                                                                    <  2:745129‑M2/26‑1 (MQ=255)
                          ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaacaaaaagacgactcatcagccgccttaaaaatcagtttgccagcgccgcattctgcCGTCCCCCGACACTCAATGCTGGGccc                                                                                                                   >  1:337068‑M2/117‑143 (MQ=255)
                            aaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaacaaaaaggcgactcatcagtcgccttaaaaatcagtttgcccgcgccgcgttctgcCGTCCCTCGCACTTCAACGATGcgccccc                                                                                                                 >  1:72920‑M2/115‑141 (MQ=255)
                            aaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagagcagacgtcagcCGTCCCCTGCACTTCACTGCTGCGCCCGt                                                                                                                 >  2:686683‑M2/115‑143 (MQ=255)
                             aactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcataagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCCATGCTGCGCccgcc                                                                                                                >  1:499731‑M2/114‑141 (MQ=255)
                              actggcgctgatatggtttcatgccttcgctcctcatcttactttactacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCcgtgt                                                                                                               >  2:192156‑M2/113‑141 (MQ=255)
                                 ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                            <  2:156873‑M2/34‑1 (MQ=255)
                                  gcgctgctatcgtctcatgccttcgctcctcaccttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagttcgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                                                           <  1:69376‑M2/35‑1 (MQ=255)
                                  gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaacaaggcgactcatcagtcgccttaaaaatcagtttgccaacgccgcctgctccCGCCCCCTGCACATCACTCATGCGCCCGCCTCCgg                                                                                                           >  1:587275‑M2/109‑143 (MQ=255)
                                    gctgatatggttgcatgcctccgctcctcgtcttactttcctacagacagaagaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                         <  1:594364‑M2/37‑1 (MQ=255)
                                      tgagatggtttcatgccgtcgctcctcatcttacttgtctacagacaaaaaaaaggcgactcaccagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                                       <  1:70251‑M2/39‑1 (MQ=255)
                                            ggtttcatgccttcgctcctcatcttacttttctacagacaaaaacaaggcgactcatcagtcgccttaaacatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCactcc                                                                                                 >  1:846217‑M2/99‑141 (MQ=255)
                                               ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                              >  2:804854‑M2/96‑143 (MQ=255)
                                                tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                             >  2:601582‑M2/95‑143 (MQ=255)
                                                ccacgccttcgctcctcatcttacttgcctaccgacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGAGGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                             <  2:116153‑M2/49‑1 (MQ=255)
                                                  atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGgtcct                                                                                           >  2:860790‑M2/93‑141 (MQ=255)
                                                   tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                                                          >  2:306600‑M2/92‑143 (MQ=255)
                                                         cgcttctcatctgactcttctaccgacaacaaaaaggcgactcatcagtcgccttaaaaatcattttgtcagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                                                                    <  1:991278‑M2/58‑1 (MQ=255)
                                                          gctcctcatcttacttgtctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                                   <  2:335697‑M2/59‑1 (MQ=255)
                                                              ctcaccttacctttctacccacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                                                               <  2:351721‑M2/63‑1 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                     >  2:155134‑M2/71‑143 (MQ=255)
                                                                             tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGGCTTCAAc                                                                >  2:381336‑M2/66‑143 (MQ=255)
                                                                              acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGGCGAGTCTTCAACg                                                               >  1:512784‑M2/65‑143 (MQ=255)
                                                                                  acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGGAtt                                                           >  2:621690‑M2/61‑143 (MQ=255)
                                                                                   caaaagaaaggcgcgtcttcggtctccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCGTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                          <  1:45038‑M2/84‑1 (MQ=255)
                                                                                   caaaaaaaaggcgactcatcagtcgccttaaaaatcagttcgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                          <  2:4672‑M2/84‑1 (MQ=255)
                                                                                    aaaaaaaaggcgactcatcagtcgcattaaatatcagttttccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                         <  2:956373‑M2/85‑1 (MQ=255)
                                                                                     aaaaaaaggcgtctcagcggtcgccttaaaaatcagtttgccagcgccgccttcggcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCATCgtatttta                                                        <  1:175240‑M2/86‑4 (MQ=255)
                                                                                     aaaaaaaggcgactcagcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCa                                                        <  2:607243‑M2/86‑1 (MQ=255)
                                                                                      aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCGTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAGTGCAg                                                       >  2:560419‑M2/57‑143 (MQ=255)
                                                                                       ataaaggcgactcatcagtcgcctcaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                      <  2:566725‑M2/88‑1 (MQ=255)
                                                                                       aaaaaggcgactcatcagtcgcttgaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGCTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                      <  1:428142‑M2/88‑1 (MQ=255)
                                                                                              cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaaa                                               <  2:390911‑M2/95‑1 (MQ=255)
                                                                                                     tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATAATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                        >  2:663911‑M2/42‑143 (MQ=255)
                                                                                                           gccttaaaaatcggtgcgccagcgccgccttctccCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                  <  1:80588‑M2/108‑1 (MQ=255)
                                                                                                             cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCCTCGCCGTTca                                >  1:227276‑M2/34‑143 (MQ=255)
                                                                                                             cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCAGTCATCACTACGCTCATGTCGGTCTCTGCGGCACAGCCTTCACCGTATTCCACCTCGCACACCCCACCGCCCTTca                                >  1:586448‑M2/34‑143 (MQ=255)
                                                                                                                  aaagcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGCCTTCCACGTATTCCAGATCGCAAACCGCTTCGCCGTCCACACtt                           >  1:677874‑M2/29‑143 (MQ=255)
                                                                                                                   aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCGCAAACCGCTTCGCCGTTCACAattg                          >  2:352576‑M2/28‑142 (MQ=255)
                                                                                                                      catgtcgccagcgccgcctactgcCGTCCCCTGCACATCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCAGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa                       <  1:544710‑M2/119‑1 (MQ=255)
                                                                                                                             ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAAc                >  2:254811‑M2/18‑143 (MQ=255)
                                                                                                                               agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACCGAAACTg              >  2:647377‑M2/16‑143 (MQ=255)
                                                                                                                                  gccGCCTTCTGCCGTCCTCTCCACCTGATGGTTGCGCCCGTGCTCGGTTATCGTTGCGTTCGTGTTGTTGTCTGCGTATGAGTCTTCAGCTTATGCCGGGTCGCAAACCGCGTGGCCGTTGACAATTCCGACAGAAACTGCgg           <  1:939515/141‑1 (MQ=255)
                                                                                                                                   ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACTTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGc          <  2:95882‑M2/132‑1 (MQ=255)
                                                                                                                                    cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACAGCGGCt         >  1:810591‑M2/11‑143 (MQ=255)
                                                                                                                                       cTTCTGCCGTCCCCTGCACTTCATTGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGAACTCTGCCGCAGAGTCTTCCACGTATTGCAGATCAAAAACCGCTTCGCCGTCTACAACTCCGACGTCAACTCCGGATAcc      >  1:1006195/1‑143 (MQ=255)
                                                                                                                                           tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  <  2:512338‑M2/140‑1 (MQ=255)
                                                                                                                                           tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  <  2:803530‑M2/140‑1 (MQ=255)
                                                                                                                                           tgcCGTCCCCGTACATTCAATGCTGCGCCTGTCTACGGGCATCACTACGTTCTTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  <  1:294932‑M2/140‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                             
ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815798‑3816079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: