| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 357,819 | G→C | 19.2% | A291G (GCG→GGG) | cynR ← | transcriptional activator of cyn operon, autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,819 | 0 | G | C | 19.2% | 70.0 / 3.7 | 44 | A291G (GCG→GGG) | cynR | transcriptional activator of cyn operon, autorepressor |
| Reads supporting (aligned to +/- strand): ref base G (24/11); new base C (7/2); total (31/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 | |||||||||||
GTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGACCACCTGTGGATGTAGC > NC_000913/357581‑358055 | ttgtCAGCGGCTACCGTTATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACcg < 1:802019/238‑1 (MQ=255)gtgtCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACcg < 2:342713/239‑1 (MQ=255)gtgtCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACcg < 1:259171/239‑1 (MQ=255) gCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCCGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGAGGCTACCGTGATTCATTTCCGCCAACAACCGCGCAtt > 1:658086/1‑239 (MQ=255) ggCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCAt < 1:630245/236‑1 (MQ=255) gCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCCTCTCCGGGCTGCGGAGAGCACTGAACTCGTAGGCCTGATAACCGTAG‑CGCATCAGGCAATTCCAGCCGCAAACCTGGGGCAGCGGGGCGCGGGGTTCATTTCCGCCAAACACCCCGCCTTTa > 2:221285/1‑238 (MQ=25) tACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATcc > 1:1164582/1‑239 (MQ=255) attcattcCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTCTCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCACCCGCAGACCTGTGTCCGCGGCGACCGTGGTTCCTTTCCGCCCACCACCGCCCATTTTTCCACCGcc > 2:1328848/1‑238 (MQ=21) tcctccAACTCCATGTGCAGAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATCCCCGATACGGCGTTCAACCCTTTTCCCACCGACGTAGAACACCAACCTCGTAGGCGTGAGAAGCGGAGTCGC‑CCAGGCGGTTTGAGGCGCAGAACTGCGGCGGCGGCTGCCGGGATTTATTTCCTCCAACAACCCCGAATTTATACTACTCACT‑GTGCAAAAATCCCCT‑CCCCGCGG‑Ct > 2:1102823/1‑239 (MQ=255) tcctccAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGGGATTCATTTCCGCCAACAACCGCGCAATTATCCAACGCCAT‑GTTCAAAAATGCCTT‑Cgcggcg > 1:729728/1‑236 (MQ=255) aTGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGCACGCCTTATCCGGCCTACGTAGAGCACTGAAATCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCCGCCGCAGACCTGTGTCAGCGGCTAACGTGATTCATTTCCGCCAAAAACCCCGCATTTATCCCACGCCAT‑TTGCAAAAATGCCCT‑CGCGGCGG‑CTGGCTCCCCGCTa > 2:952476/1‑239 (MQ=18) aTGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCCTTTATCCAACCCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTa > 1:84942/1‑239 (MQ=255) aTGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGcca > 1:1083380/1‑237 (MQ=255) aTGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTa > 1:1305601/1‑239 (MQ=255) tgtgCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCCTGATTCATTTCCGCCAACAACCCCCCATTTATCCAACGCCA‑‑‑TGCAAAAATGCCTT‑CGCGGCGG‑CGGTCTGCCACCCAttt > 1:1204456/1‑239 (MQ=18) tgtgCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGAGGCTACCGTGATTCATTTCCGCCAACAACCCCGCATTTATCCCACGCCCT‑GCGCAAAAATGCCTT‑CGCGGCGG‑CTGGCTGCCAGCttg > 2:243771/1‑237 (MQ=255) gtgCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTGCCGCCCACAACCGCCCCTTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGACGG‑GCGTCTGCCAGCTAtt > 1:1059123/1‑239 (MQ=17) ccTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCCCCCATTTATCCAACGCCAT‑GTGCAAAAACGCCTT‑CGCGGCGG‑GCGCCTGCCCGCTCTTTTTtcgccccc > 2:1240645/1‑236 (MQ=17) ccTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCCACGTAGAGCACTGGACCCGTAGGCCTGATAAACGGAG‑CGCATCAGGCAATTCCAGCCGCAGACCTTGGTCAGCGGCTACCGTGATTCATTTCCGCCAACCACCGCGCCTTTAGCCAACGCCAT‑GTGCAACAATGCCTT‑CGCCGCGG‑CTGTCTGCCAGCCATGTTTccgcctc > 2:501507/1‑236 (MQ=17) cGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACcg < 1:1006826/161‑1 (MQ=255) cGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACcg > 2:1006826/1‑161 (MQ=255) gCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCCGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACCCCCT‑TGGCAAAAATGCCTT‑CGCGGCGG‑CCGTCTGCCAGCCATTTTTTCCCCCCAACAAAAACGCCCGTCCCTccc > 2:696177/1‑237 (MQ=14) aGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGcc < 2:1300732/160‑1 (MQ=40) aGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGcc > 1:1300732/1‑160 (MQ=40) tttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGc > 1:175765/1‑239 (MQ=255) tttATGCCGGATGCGGCGTGAACCCCTTATCCGGGCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGAGGAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAAAGCCTT‑CGCGGCGG‑CTGTCTCGCAGCTATTTTTCCGCCGCAAAAAAACCCCCGGtctctctcgaagttgg > 2:1248628/1‑229 (MQ=17) tGCCGGCTGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAAGGCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAAACCTGTGTCAGCGGCTCCCGGGGTTCATTTTCGCCCTCAAACGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGACGCGG‑GTGTCTGCCACCTCTTTTTTCGCCGCAACCAAAACCCCGTTGTCTCCCGTCGTGCT‑gggg > 2:1264451/1‑239 (MQ=14) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGGACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCCCGCATTTATCCAACGCCAT‑GTGCCAAAATGCCTT‑CGCGGCGG‑CCGTCTTCCCGCTCTTTTTTCCCCGCCACAAAACCGCCGCTCTTTCCCGGAAGGGC‑GGGGc > 2:1227977/1‑239 (MQ=14) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCCGCTATTTTTTCGCCGCAACAAAACCGCCGTTCTCTCCCGTAGTGGC‑GGGGc > 2:8340/1‑239 (MQ=255) gATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCCGTAGTGGC‑gggggctag > 1:128078/1‑234 (MQ=255) aTGCGGCGTGAACCCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCCT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCCGTCTCTCCAGTAGTGGC‑gggcggcggg > 1:743392/1‑232 (MQ=255) ggcgagcacctcTTACCCGGCCTCCGAAGGGCCCTGAACTCGTAGCCCTGAAAGGCGTGG‑CGCTCCAGCATACCCCCGCCCCGGCCCTGTGTCAGGGGCTACGGTGATTCTTCCCCCCCACCACCCCCGCTTTAACCCACCCCCAT‑GTCAAAAAATCCCTT‑CGGGGCGG‑TTGTCGGCCAGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGaaa < 2:87675/227‑1 (MQ=255) aTCCGGCCTACGTAGACCTCTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCATCCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAAcccc < 2:1275339/130‑1 (MQ=14) gCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCCGTAGTGGC‑GGGGCAACGAGAAAA‑AG‑TTTAATccccgctttg > 1:525869/1‑232 (MQ=18) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAC‑GTGGAAT‑aaattttttaccctcccgttg > 1:1326757/1‑219 (MQ=18) cGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCaaaa > 1:1275339/1‑130 (MQ=255) tGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTg < 1:893224/142‑1 (MQ=255) tGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTg > 2:893224/1‑142 (MQ=255) tGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCAA‑AGGAAAA‑AGATTTAA‑CCCCCCATGGTGTTTGGCGATCcct > 1:87052/1‑239 (MQ=18) ccTCGTAGGCCTGATAAGCGTAC‑CGCATCAGGCAATCCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctgc < 2:627455/237‑1 (MQ=255) gTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGCA‑GAGGAAA‑AACTTTTAAACACTCTTGTTGTGTTGGGAAGGCTGCTGGGAACCACGTgggtatgg > 1:1192581/1‑233 (MQ=18) gcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGCA‑GAGAAATAAGATTTAA‑CCCCTCACTTTGTTTGGGAATAGCTGGTGGGTACAAAGTGGGAAGGGGAGTg > 1:470435/1‑239 (MQ=21) tccatccccGCCAACACCCGCACTTTACCCCACCCCCAT‑TTGAAAAAATGCCTT‑GGGGGCGG‑TTGTCGGCCGTCTATTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGa < 1:286968/232‑1 (MQ=255) tctttccccccAACACCCGCGCTTTTACCCAACGCCAT‑GTCAAAAAATGCCTT‑CGCGGCGG‑TTGTCTCCCAGCTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGac < 1:1298912/230‑1 (MQ=255) tctttcccGCCAACCCCCGCGCATTT‑CCCAACCCCATGGTCAAAAAATCCCTT‑CGCGCGGG‑CTGTCGGCCAGTTATTTTCCCGCCCAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGac < 2:1305601/233‑1 (MQ=255) tctttcccGCAAACACCCGCGCATTTACCCAACCCCAT‑GTAAAAAAATGCCTG‑CGGGGCGG‑CGGTCCGCCAGCTATTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGac < 1:8340/233‑1 (MQ=255) ttcccGCCAACACCCCCACTTTTACCCACCGCCAT‑GTAAAAAAATGCTTC‑CGCGGCGG‑CTGCCTGCCATTTATTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGaccac < 1:134787/236‑1 (MQ=255) cccaaacaccCGCGCTTTTACCCACCGCCTG‑GTGCAAAAAGGCCTC‑CG‑GGCGGTTTTTCGCCCAGTTTTTTTCCCGCCGAAAAAAAGCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGACCACCtgt < 1:508315/235‑1 (MQ=255) ccGCGAATATACCCAA‑GCCAT‑GGTCAAAAACGCCTTCCGGGGCGG‑TTTTCTGCTGGTTTTTTCCCCGCCACAACAAACCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGACCACCTGTGGATGTAGc < 2:1149998/239‑1 (MQ=255) | GTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCTCCAACGCCATGTGCAAAAATGCCTTCGCAGCGGCTGTCTGCCAGCTGTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAG‑CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAACCGCGCATTTATCCAACGCCAT‑GTGCAAAAATGCCTT‑CGCGGCGG‑CTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAGAAAT‑AGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGACCACCTGTGGATGTAGC > NC_000913/357581‑358055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |