Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,361,335	A→C	20.1%	G26G (GGT→GGG)	rhmD ←	L‑rhamnonate dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,361,335	0	A	C	20.1%	223.4 / 6.1	95	G26G (GGT→GGG)	rhmD	L‑rhamnonate dehydratase
Reads supporting (aligned to +/- strand):  ref base A (54/17);  new base C (2/22);  total (56/39)
Fisher's exact test for biased strand distribution p-value = 4.12e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCGCAGCGGTA  >  NC_000913/2361106‑2361571                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                             tACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCa                                                                                                                                                                                                                                     <  2:513732/239‑1 (MQ=255)    ccacAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCCCCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAgcg                                                                                                                                                                                                                                  <  1:800129/236‑1 (MQ=255)    ccTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAgc                                                                                                                                                                                                                                   >  1:482971/1‑238 (MQ=255)      tCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAGTGCCAAATG‑ACTGGCGTGAATGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCCCCGCCAtcg                                                                                                                                                                                                                                  >  2:960614/1‑237 (MQ=255)        aaTGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CCGTGATTCGCCCCCT‑GGTCGTG‑ATAATAACCGCCGCCAGCACCtt                                                                                                                                                                                                                              >  1:60993/1‑239 (MQ=255)        aaTGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCtt                                                                                                                                                                                                                              >  2:1213986/1‑239 (MQ=255)        aaTGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCtt                                                                                                                                                                                                                              >  2:1096540/1‑239 (MQ=255)        aaTGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCtt                                                                                                                                                                                                                              >  2:948653/1‑239 (MQ=255)        aaTGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTAATCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCCCCACCGCCtt                                                                                                                                                                                                                              >  1:1450007/1‑239 (MQ=255)        aaTGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGAAATCGCGGTATTTACTCATCGGGGAGGCAATATGATCGGCTATC‑CAGGGGTTCGCCCCCT‑GGTCGTG‑ATACTCACCGCAGCCAGCGCCtt                                                                                                                                                                                                                              >  2:1408694/1‑239 (MQ=255)          tGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGTCCCCT‑GGTCGTT‑AGAATCACCCCCGCCAGAGCCtttt                                                                                                                                                                                                                            >  2:1592489/1‑239 (MQ=255)                  ttAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTct                                                                                                                                                                                                                         >  2:53565/1‑234 (MQ=255)                            tttCGACAATAAAACAGCCCATTTCACCGACTGTCGAAACGGCGAATCCGGTCTGCCCGTTTTCTGCTTCGACTTCAACAAACAA‑CGTTCCCAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGAATGCT‑CGTAATCGCGGTATTTACTCAACGGGGGGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGGCTTTTTCTGCTGTCGCACCCCCa                                                                                                                                                                                                          >  2:1452420/1‑239 (MQ=255)                                  cAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTaaa                                                                                                                                                                                                     >  2:1395877/1‑238 (MQ=255)                                     tAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCCGTAAAcccg                                                                                                                                                                                                 >  1:1170320/1‑237 (MQ=255)                                            gCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGa                                                                                                                                                                                           >  2:1576123/1‑238 (MQ=255)                                             cccATTTCACCGGCTGTCGAAACGGCGCATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCCTTGGGGTGGCAATATGATCGTCTATC‑CAGCGATTCGCCCCCT‑GGTCGTG‑ATAATCAACGCCGCCAGCGCCTTTTTCTGCCGTCGCAACGCCAGAAAACCCGGCCCGaa                                                                                                                                                                                          >  1:1038486/1‑238 (MQ=255)                                             cccATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGaa                                                                                                                                                                                          >  2:719444/1‑238 (MQ=255)                                             cccATTCCCCCGCCTGCCAAAACGGCAAACCGGGTTGGGCCGTTTTCTGCTTCGACTCCAACAACCAA‑CGTCCAAAGAA‑CGTTAATGCAAATTG‑CCTGGCGTGACTGCT‑CGTAATCGCGGTATTTCCTCACCGGGGTGGCAATATGATCGTTTATC‑CAGTGATTCCCCCCCG‑GGTCGTG‑ATAACCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAAc                                                                                                                                                                                         <  1:571986/239‑1 (MQ=255)                                               cATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGaa                                                                                                                                                                                          >  2:1471278/1‑236 (MQ=255)                                                 tttCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGt                                                                                                                                                                                     >  2:1122444/1‑239 (MQ=255)                                                  tcccccGGCTTGCAAAACGGGGATCCCGGTTTGCCGGTTTTTTGTTCCGACTCAAACACCCAA‑CGTGCAAAGAA‑CTTTAATGCAAAATG‑ACGGGCGTGACTGCT‑CGTAATCGCGTTTTTTCCTCATCGGGGTGGAAATATGATCGTCTACC‑CAGTGTTTCCCCCCCT‑GGTCGTA‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGtt                                                                                                                                                                                    <  1:1576123/235‑1 (MQ=255)                                                       cGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAAtt                                                                                                                                                                               >  2:1306655/1‑239 (MQ=255)                                                       cGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAAtt                                                                                                                                                                               >  2:1129645/1‑239 (MQ=255)                                                             tCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑CCTGGCGTGCCTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGACCGTCTATC‑CAGTGATTCGCCCCCG‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTgg                                                                                                                                                                          <  2:755122/238‑1 (MQ=255)                                                               aaagcGGCGAGCCGGGTCTGCCCTTTTCCTGCTACGATTACACCACCAAA‑CGGGCAAATAA‑CTTTATTGCCAAAGG‑ACGGGTGTTCCTGCT‑CTTAATGGGGGTATTTCCTCTGCGGGGTGGAAATATGATCTTCTATC‑CGGTAATTCGCCCCCT‑GGCGTTA‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTa                                                                                                                                                                        <  1:387830/234‑1 (MQ=255)                                                                   cggctcaTCCGGTCTGGCCGTTTTCTGTTTCGACACCAACCACCAA‑‑GTGGCGAAAA‑ACTTAACCCCCAATGTAGTGGCGTTGCCGCT‑CGAACTCGTGGTATTTACGCACCGGGGTGCCAATATGCCTGCCTACC‑CATTGTTTCGCCCGCG‑GGTCGTG‑ATAATCACCTCCCCCACCGCTTTTTTCGTCTGTCGCCCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTc                                                                                                                                                                   <  1:1083446/233‑1 (MQ=255)                                                                    aatgtgaaaaaaagacaggTTTTCTGCTCCGACTCAAACACCCAC‑CGTTCCAAGAA‑CTTTAATGCAAAATG‑CCTGGCGTGATTGCT‑CGTAACCGCGGTATTTCCTCACCGGGGTGGAAATATGATCGTCTATC‑CAGTGTTTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCa                                                                                                                                                                  <  1:1727189/221‑1 (MQ=255)                                                                           ccggctgggCCGTTTTCTGC‑TCGGCCTAAACACCCAACCGTG‑CAAGAAGCTTTAATGCAAATGG‑CCGGGCGGGATGCCT‑CGAACGCGGGTTATTTACTCACGGGGGTGGAAATATGATCGTCTACC‑CAGTGATTCCCCCCCG‑GGTCGTG‑ATAACCCCCGCCGCCAGCGCCTTTTTCTGTTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGtt                                                                                                                                                           <  1:1604409/232‑1 (MQ=255)                                                                           ccGGTCTGGCCTTTTTCTTCGCCGACTTCAACAACCAT‑CGTGCCAAGAA‑CGTTAATGCCAAAGG‑ATGGGCGGTACTGCT‑TGAAATCGCGGTATTTCCTCAGCGGGGTGGAAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGGA‑ATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGtt                                                                                                                                                           <  1:533681/239‑1 (MQ=255)                                                                               tctgcctttttcCTGCTCCGACTTCAACACCCAA‑CTCACCAAAAA‑TTTAAATCCCAGATG‑ACT‑GCTTTGCTTCTGCATACTCGCTGTATTTCCTAAGCGGGTTGGAATTAGTACCGTCAACC‑CGGTGTTTCCCCCCCT‑GGTCTGG‑ATAACCACCGCGCCCAGCCCCTTTTTCTTCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTcc                                                                                                                                                       <  1:436473/231‑1 (MQ=255)                                                                                tagcccGTTTTTGGCTTGGACTCCAACAACCAA‑GGGCCAAAGAG‑CGTTAATGCAAAATG‑CCGGGGGTGACTCCG‑CGTAATCGCGGTATTTACCCAGCGGGGGGGAAATGTGACCGCCTACC‑AGGTCTTCCCCCCCCT‑GGTGGTG‑ATAACCACCGCCGCCGGCGCCTTTTTCTGGGGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCa                                                                                                                                                      <  1:1730944/235‑1 (MQ=255)                                                                                cTGGCCTTTTTCGGCTTCGACTTCAACAACCAC‑CGTGCCAAGAA‑CTTTAATGCCAAATG‑ACGGGCGTGACTGCT‑CGTAATCGCGTTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCa                                                                                                                                                      <  2:1170320/239‑1 (MQ=255)                                                                                  ggCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCAtt                                                                                                                                                    >  2:188141/1‑239 (MQ=255)                                                                                    ccGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTCTTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGCACCTGTTTAATTTTTGGTAGGGTCCTGATGTTCTCCATTGt                                                                                                                                                  >  2:1690741/1‑239 (MQ=255)                                                                                       tttttgtctgcGACTACAACACCCAA‑CGTGCAAAGAA‑CTTTAATGCCAAAGT‑ACGGGTGTGCCTGCT‑CTTAATCGCGGTTTTTACCCAGCGGGGTGGAAATATGACCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTAt                                                                                                                                               <  1:1122444/229‑1 (MQ=255)                                                                                       ttttCTGCTTCGCCTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTAt                                                                                                                                               <  2:1271319/239‑1 (MQ=255)                                                                                                tCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCAGCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGt                                                                                                                                      <  2:138503/239‑1 (MQ=255)                                                                                                 cGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTtctc                                                                                                                                                        >  2:1727189/1‑220 (MQ=255)                                                                                                                  cGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACttt                                                                                                                      >  2:60662/1‑238 (MQ=255)                                                                                                                           aa‑CGTAAATGCAAAATG‑ACTGGGGGGACTCCT‑CGAAATCGCGGTATTTCCTCATCGGGGTGGCAATAGGACCGCCTATC‑CAGTGCTCCGCCCCCT‑GGTCGTG‑ATAACCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCaa                                                                                                            <  1:1096540/239‑1 (MQ=255)                                                                                                                            accGTTAATCCCAAATG‑ACGGGCGTGCCTGCT‑CTTAATCGCGGTATTTCCTCATCGGGGTGGAAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCaa                                                                                                            <  2:450803/237‑1 (MQ=255)                                                                                                                                      ccAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGaa                                                                                                  >  2:959736/1‑239 (MQ=255)                                                                                                                                         aaTG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATCATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGGAata                                                                                               >  1:1178652/1‑239 (MQ=255)                                                                                                                                                      tgtctgccggtatcggcgTTATTTCCTCAGCGGGGTGGCAATATGATCTTCAAGC‑AGGTGATTCGCCCCCG‑GGTCGTG‑ATAATCACCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGgcgc                                                                                     <  2:1012115/223‑1 (MQ=255)                                                                                                                                                      gACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAg                                                                                   >  2:1299734/1‑239 (MQ=255)                                                                                                                                                                     gcgGTATTTACTCATCGGGGTGGCAATATGACCGTCTACC‑CAGTGTTTCGCCCCCG‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGcc                                                                     <  2:809254/239‑1 (MQ=255)                                                                                                                                                                      cgGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGccc                                                                    >  2:1243034/1‑239 (MQ=255)                                                                                                                                                                      cgGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGccc                                                                    >  2:201303/1‑239 (MQ=255)                                                                                                                                                                         ccagcattatggggctgttctatatGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTGAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGcc                                                                 >  2:1642684/22‑239 (MQ=255)                                                                                                                                                                          tatttatctggggggggGAAATATGATCCTCTATCACAGTGTTTCGCCGCTG‑GGTGTTA‑ATATACCCGGCCGCCAGCGCTTTTTTCTCTTGTGACACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGc                                                                  <  1:188141/227‑1 (MQ=255)                                                                                                                                                                                 cATCGGGGTGGCAATAGGATCGTCTACC‑CAGTGATTCCCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATc                                                         <  1:1243034/239‑1 (MQ=255)                                                                                                                                                                                  gtgggggggGAAATAGGACCTCCTACC‑CAGTGTTCCGCCCCCT‑GGTCGTG‑ATAACCCCCGCCGCCAGCGCCTTTTTCTGCTGGCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCa                                                        <  1:719444/236‑1 (MQ=255)                                                                                                                                                                                  ctgggggggGCATGATTATCGTCTTCC‑CAGTGTTGCGCCCCGT‑GGTTGTA‑AAAATCACCGCCGCCAGCGCCTTTTTCGTCGTCCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCa                                                        <  1:1040591/236‑1 (MQ=255)                                                                                                                                                                                  accGGGGGGGAAATATGACGTTCTACC‑AAGTAATCCCCCCCGG‑GGTCGTA‑ATAACCCCCGCGCCCAGCGCTTTTTCCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCa                                                        <  2:1566412/237‑1 (MQ=255)                                                                                                                                                                                   tgggggTGGAAATATGACCGCCTCTC‑CGGTGTTTCGCCCCCT‑GGTCGTG‑ATAACCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCa                                                        <  1:353271/236‑1 (MQ=255)                                                                                                                                                                                   tCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCAc                                                       >  1:1490047/1‑239 (MQ=255)                                                                                                                                                                                   tCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCAc                                                       >  2:718881/1‑239 (MQ=255)                                                                                                                                                                                   tCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCAc                                                       >  1:1095506/1‑239 (MQ=255)                                                                                                                                                                                   tCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCAc                                                       >  1:355613/1‑239 (MQ=255)                                                                                                                                                                                   tCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCAc                                                       >  2:1150908/1‑239 (MQ=255)                                                                                                                                                                                   tCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATT‑TTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACg                                                      >  2:1571460/1‑239 (MQ=255)                                                                                                                                                                                    cGGGGTGGCAATATGATCGTCTATC‑CATTGATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACg                                                      <  2:1471851/239‑1 (MQ=255)                                                                                                                                                                                    cGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATgg                                                                            >  2:941714/1‑217 (MQ=255)                                                                                                                                                                                    cGGGGTGACAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACg                                                      <  2:355613/239‑1 (MQ=255)                                                                                                                                                                                       ggTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGtt                                                                                                                                                 >  2:452948/1‑145 (MQ=255)                                                                                                                                                                                       ggTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTa                                                   >  2:460765/1‑239 (MQ=255)                                                                                                                                                                                        gggacAATATGTCCGTCTACC‑GATTAATTCGCCCCCT‑GGTGTTG‑ATAATCCCCGCCGCAAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTa                                                   <  2:60993/234‑1 (MQ=255)                                                                                                                                                                                          ggCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAt                                                  >  1:308691/1‑237 (MQ=255)                                                                                                                                                                                            cAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAttct                                               >  1:415746/1‑238 (MQ=255)                                                                                                                                                                                               tatGATCGTCTATC‑CATTGATCCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGCCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt                                           <  1:1306655/239‑1 (MQ=255)                                                                                                                                                                                               aatGTTCGTCTTTC‑CAGTGTTTCCCCCCTT‑GGTCGTA‑AAATTCCCCGCCCCCGGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt                                           <  2:765764/238‑1 (MQ=255)                                                                                                                                                                                                taggcgtgcaaaccctgtgtTTCCCCCCGT‑GGTCGTA‑AAAATCCCCGCCGCCAGCGCCTTTTTCGGCTGGCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt                                           <  1:94219/223‑1 (MQ=255)                                                                                                                                                                                                      gtttacc‑cAGTGATTCGCCCCCT‑GGTGGTG‑ATAACCACCGCCGCCAGCTCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTg                                    <  2:98557/233‑1 (MQ=255)                                                                                                                                                                                                       tCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGt                                   >  2:1279195/1‑239 (MQ=255)                                                                                                                                                                                                       tCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGt                                   >  1:1306662/1‑239 (MQ=255)                                                                                                                                                                                                          ttatccgtggatCGCCCCCC‑TGGCGTGAATAACCCCCGCCCCCAGCGCTTTTTTCTGTGGTGGAGCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTa                                  <  1:567477/228‑1 (MQ=255)                                                                                                                                                                                                           tC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGc                               >  2:567477/1‑239 (MQ=255)                                                                                                                                                                                                           tC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGc                               >  2:1548453/1‑239 (MQ=255)                                                                                                                                                                                                            gccgttggaccGCCCCCTGGGCCTTG‑ATAATCCCCCCCTCGCGCCCTTTTTTTTGCGTCCGCACCGCCAGTAAACCAGTCTCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTTTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCTCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGTTATTCTTCATTGATTTGTAAg                                <  1:1032643/229‑1 (MQ=255)                                                                                                                                                                                                                 tGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGt                           >  1:248466/1‑238 (MQ=255)                                                                                                                                                                                                                  gATTCGCCCCCT‑GGTCGTG‑ATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTAc                         <  2:1288832/239‑1 (MQ=255)                                                                                                                                                                                                                   aTTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTAcc                        >  2:223906/1‑239 (MQ=255)                                                                                                                                                                                                                      cGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGAt                                                             >  2:1561930/1‑199 (MQ=255)                                                                                                                                                                                                                      cGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACg                                                      >  1:507450/1‑206 (MQ=255)                                                                                                                                                                                                                      cGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGa                      >  2:683555/1‑238 (MQ=255)                                                                                                                                                                                                                      cGCCCCCT‑GGTCGTG‑AAAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACg                                                      <  2:507450/206‑1 (MQ=255)                                                                                                                                                                                                                       gCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGacc                    <  2:248466/239‑1 (MQ=255)                                                                                                                                                                                                                       gCCCCCG‑TGTCGTG‑ATAACCCCCCCCGCCAGCGCCTTTTTCCGCTGTCGCTCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGacc                    <  2:506693/239‑1 (MQ=255)                                                                                                                                                                                                                           ccT‑GGTCTTG‑ATAATCACCGCCTCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTTAACCAGTGGCGAACCTGCTTAATTTTTTTTAGGGTAATGACTTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGTCTTTTCCATCTCTTCAGACGGTAATTATCCCTGGCGCAGGCAATGGCCTTGCCCGCCATATACACACGGTATTCTTCATTGATTTGTAATCGGGTACCGCCCACCg                >  1:1528790/1‑239 (MQ=255)                                                                                                                                                                                                                           ccT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAttctt                                              >  2:814768/1‑209 (MQ=255)                                                                                                                                                                                                                             t‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCAATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCga               >  1:1269029/1‑238 (MQ=255)                                                                                                                                                                                                                                gTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCgaga             >  2:860684/1‑238 (MQ=255)                                                                                                                                                                                                                                    tG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACAGAAATCGcc        >  1:1326106/1‑238 (MQ=255)                                                                                                                                                                                                                                           tCACAGCCGCCAGCGGCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCCTCCCAACAGACGTGAACTATCCCTCGCGCAGGCAATGGCCTTGCCCGCCCGCTAATCACGACATTATTCATTGATTTGTAAGGGGGACCCGACCACCggatccgccacggac  >  1:1639857/1‑225 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                             TACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAACGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAA‑CGTGCCAAGAA‑CGTTAATGCCAAATG‑ACTGGCGTGACTGCT‑CGTAATCGCGGTATTTACTCATCGGGGTGGCAATATGATCGTCTATC‑CAGTGATTCGCCCCCT‑GGTCGTG‑ATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCGCAGCGGTA  >  NC_000913/2361106‑2361571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑