Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,367,366 | G→T | 20.5% | D100Y (GAT→TAT) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,367,366 | 0 | G | T | 20.5% | 137.1 / 8.3 | 65 | D100Y (GAT→TAT) | arnC | undecaprenyl phosphate‑L‑Ara4FN transferase |
Reads supporting (aligned to +/- strand): ref base G (12/39); new base T (12/2); total (24/41) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.81e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 |
AAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGA > NC_000913/2367131‑2367604 | aaGCTTACCGGAATAAACCGGGCGCACACCCACAGCCTGGGAATCGTTGGGGAAAGAGTCTGAGAGCCTGCTGATTGATGACGCCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATg < 1:1158672/239‑1 (MQ=255) cGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGGTTGTGA‑CACGTTACTGGAGACTTTATTATTACACTT‑GATGCCggtgt > 1:845536/1‑234 (MQ=255) cAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGGAGGAGACCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGc < 1:533077/239‑1 (MQ=255) cgcACCGCCACAGCCTGTGAATCGATGGGGAAAGAGTAGGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGcc < 1:672769/236‑1 (MQ=255) gtataggaaagagttCGTGGGGAAAGGAGTATGAGTTCCGGCTGATGGAGGACGGCAG‑GGGCGATAATTCC‑GCGAATATGCAGGTCGAAGCCCACCAGGGGGAAAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCAATTAT‑GGCGGGATTCAGT‑CACGTTCCTGGCGACTTAATTATTCCCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATc < 1:530158/225‑1 (MQ=255) gtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCtg < 2:1010417/239‑1 (MQ=255) gAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTTAGT‑CACCGTTTTTGCGGCTTAATTATTTTCCTT‑TATGCCCCT‑CTCCAGAATTCCCCCG‑AAAAAATC‑CCCCCCCcggt > 2:444266/1‑239 (MQ=255) cGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCa < 2:75532/239‑1 (MQ=255) aaGAGTATGAGTCCCTGCTGTTTGTTGCCGCAAG‑TAGCGATAATCCC‑GCCCATAGGCTGGTCGAAGCCTCACAGGGGGAGACC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGC‑CACGTTACTGGCGACTTAATTATTCCCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGAt < 1:47417/239‑1 (MQ=255) aaGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGGTTTAGT‑CACGTTACTGGCGACTTAATTTTTTCCCCT‑GATGCCGTT‑CTCCAAAATCCCCCAG‑AAAAAATT‑CCCCCCCcgggctgtttcttcta > 2:530158/1‑225 (MQ=255) ggTATGAGAGCCGGCTTATTGACGCCGGCAGTTAGC‑AAAATTCCGGCGCATATGTTGTCCAAACCCCCAAAGGGGAAAAAC‑AGCCATTTTGTTTCTATTTTGTTAAACCGAAATTCCGGGCAACATTCAGGGATT‑T‑GGGGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATg < 1:11831/236‑1 (MQ=255) agTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTTATT‑CACGTTACTGGGGACCTTATTATTATCCTT‑TGTGCCGCT‑CCTCCCAATCCGCCCA‑AAGAAAAC‑CCCCCCCCGGTGGCTAAAAcccctgga > 1:1139454/1‑233 (MQ=255) tacccgcttgattaatGCCCGCAG‑GTGAGATATTCCC‑GCGAATATCCTGTGCTAAGCCTCTAAAGCGGAGACC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGAAACATTCAGCGATTAT‑GGGGGGATTCAGT‑AACGTTACTGGCGACTTAATTATTACCCTG‑GATGCCGAG‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacg < 1:43185/231‑1 (MQ=255) tcttgctgATTGAGACCGGCAG‑TGGCGATAATCCC‑GCGCATATGCTGGTCAAAGCCCCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac < 1:439051/236‑1 (MQ=255) tCCTGCTGATTGAGGACGGCAG‑TAGCAAAAATCCC‑GCGAATATCCTGGTGGAAGCCCCACAAGCGGAGACC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac < 1:306655/239‑1 (MQ=255) tCCTGCGTATGGAGGACGGCGG‑TGGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACGAGCGGAGAAC‑AGCCATATTGTGTTTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑AACGTTACTGGCGACTTAATTATTGCCCTT‑GATGCCGAT‑CTCCAGAAACCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac < 1:589613/239‑1 (MQ=255) gccTGCTGATTGATGACGGCAG‑TAGCAATAATTCC‑GCGCATATGCTGGTCAAAGCCCCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac < 1:778735/238‑1 (MQ=255) ccTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGTTTCGTT‑CCCGTTCTGGGGGCCTTATTTTTTACCCTT‑G‑TGCCGGTCCTCCGAAATCCCCCGC‑AGAAAATC‑CCCCCCCCGGGGGCaaaaccgcagaagggttagac > 2:11831/1‑220 (MQ=255) ccTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGCTTTAGT‑CACGTTATTGGCGGCTTAATTATTAACACT‑TATGCCGCT‑CTCCAGAAACAGCCCA‑AAGAAAAA‑CCCCCCCCGTGGGGAAAAACCCACGAAAGTTacgccg > 2:1140137/1‑239 (MQ=255) tgctgATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGTGTTTAAT‑CACGTTACTTGCGACCTAATTTTTTCCCTT‑TTTGCCGGT‑CTCCCGAAACCACCCGAAAAAAAAC‑CCCCCCCTGGGGGCAAAA‑CCGATGAAAGGTacgacggg > 1:918768/1‑237 (MQ=255) tgctgATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTTATT‑CACGTTACTGGCGGCTTTATTATTATCCTT‑TTTTCCGAT‑CTTCCGAATCCCCCCA‑AAGAAATC‑CCCCCCCTGGGGGCAAAAAACGATGaaaggtaacaagtg > 2:538376/1‑227 (MQ=255) tgctgATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGGTACTGGCGACTTCATTATTACCCCT‑GATTGCCAC‑CTCCAGGATCCCCCAC‑AAGAAATC‑CCCCCCCTGGTGGCGAAAGCCGACGAAGGGTacaacggc > 2:255111/1‑237 (MQ=255) tgattgatGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGt < 2:82400/238‑1 (MQ=255) attgatGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTTAGT‑CACGTTACTGGCGACTTAATTTTTAACCTT‑TTTGCCGAT‑CTCCCGAATCCGCCAG‑AAGAAAAC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGGTacccactgggagg > 2:59281/1‑228 (MQ=255) ttgatGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTCCCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAgg < 2:94127/238‑1 (MQ=255) tgatgaCGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTTAGT‑CACGTTTCTGGCGGCTTTATTTTTAACCTT‑TATGGCGAT‑CTTCAGAAAACGCCCG‑AAGAAATC‑CACCCCCTGGTGGCGAAAAACGATGAAGGTTACGACGGGGTAgggg > 2:399787/1‑238 (MQ=255) tgatgaCGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGa < 2:512218/239‑1 (MQ=255) tgaggaCGGCAG‑TGGCGATAATTCC‑GCGCATATGCTGGTCGAGGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGa < 1:618158/239‑1 (MQ=255) ggCAG‑TAGCGATAATCCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACg < 2:641864/239‑1 (MQ=255) aaGGGGAGAACAAGCATTTTTGTGTCTATTTGGCTTAACCCAAATTACGTGCAAGATTCAGCGATTAT‑GGCGGGTTTCAGC‑CACGTTGCTGGCAACTTAATTTTTCCCCTT‑GATGCCGTA‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGaa < 1:930752/239‑1 (MQ=255) acc‑AGCAATTTTGTTTCTATTTTGCTTAACCGCAATTCCGGGAAACATTCAGCGATTAG‑GGGGGGATTCAGC‑CACGTTACTGGCGATTTAATTATTCCCCTG‑GATGCCAAT‑CTCCAGAATCCGCCAG‑AAGAAACC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTaa < 1:59281/237‑1 (MQ=255) accatctattttGTGTCTATTTTGCTTAACCGAAATTCCGGGCAACATTCAGCGATTAT‑GGGGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTCCCCTT‑GATGCCGAT‑CCCCAGAATCCGCCAG‑AAGAAACC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTaa < 2:918768/229‑1 (MQ=255) accagccttttgtggtCTATTTTGTTAAACCGAAATTACGGGAAACATTAAGCGTTTAT‑GG‑GGGATTTCGTGCCCGTACCGGGCAATTTAATTATTCCCTTT‑GTGGCGGAT‑CTCCAGAACCCCCGAG‑AAGAAACC‑CCCGGCCGGTGGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTaa < 1:903107/225‑1 (MQ=255) cctttttGGGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGC‑CCCGTTACTGGCAACTTAATAATTCCCCTT‑GATGCCAAT‑CCCAAGAACCCGCCAA‑AAGAAA‑C‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGc < 1:508671/233‑1 (MQ=255) ttttGTGTGTTTTTTGCTTAACCCAAATACCGGGCACCATTCAGCGATTAG‑GGCGGAATTCAGT‑CACGTTCCTGGCGACTTAATTATCCCCCTG‑GAGGCCGAT‑CCCCAGAATCCCCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTGGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTa < 1:399787/237‑1 (MQ=255) ttGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGGTTTAGT‑CACGGTATAAGGGAATCAATTATTTATCTT‑TAAGCCGAG‑CTCCACAAACCCCCAG‑AAGGAATCACCCCCCCCGGGGGTAAAA‑ACGAAGAAGGGTAAGCAGGGGGATGGACTGCACGCCAG‑AAACGCCAGGAAAGCGGGTTTCGTAACAACGCATTTGAAgaggataatcggcgttc > 1:185516/1‑227 (MQ=255) tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGGTTCAGT‑CACGTTACTTGCGGCTTTATTATTACCCTT‑TATGCCGAT‑CTCCAGAATCCCCCAG‑AAGAAATC‑CCCCCCCTGGTGGCAAAAACCCATGAAAGTTACGACGTGGGAGGGACTGTACGCCCG‑AACCGCCCGGACAGCCGGTTTCGTAAAACCCC‑TTCGAAGATGATTAACCGGCTTATTCatc > 2:589919/1‑236 (MQ=255) tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGGGTTAGT‑CACGGTACCGGGGGCTTTATTTTTACTCTT‑TTTGCCGCT‑CCCCCGAATCCCCCAC‑CAAAAAAC‑CCCCCCCCGGTGGGAAAAACCGATCAAGGTTATGACGAGGGAGGGGGTGGACGCCAG‑AACACCCACGCCAACTCGTTTTGTTAAAACCC‑CTCGTAgaaggttcacacgcctcttctac > 1:1149930/1‑217 (MQ=255) tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTTAAT‑CACCATTCTGGCGACTTAATTATTTCCCCT‑TATGCCGAT‑GTCCAAAAACCCCCAC‑AAAAAAAC‑CCCCCCCTCGTGGCTAAAACCCAAGAAAGGTACCCCGTGGGAGGGGCAGTACGCCCG‑AAACACCAGGACAGGTGGGTTGTGAAAAAAGC‑ATCGGAGAGGAATAAcacggttaattaga > 1:36779/1‑225 (MQ=255) tCTATTTTCCTAACCCCCAATCGC‑GGCAACAATTAGCGGTTTTGGGAGGAATTCAGT‑CCCGTTTGGGTCGCCTTACTTCTTACCCTG‑TATCCCGTC‑CCCAAAAACCCCCCAG‑AAGAAACC‑CCCCCCCTGTTGGCAAAAGCAGATGAAGTTAACGACGTGTTAGGACCTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑gcg < 1:298486/239‑1 (MQ=255) gtgatttgacTTACCCGCAATAACGGGCAAGATACAGCATTTAG‑GGCGGGATTCAGT‑CACGTTACGGACGACTAATTGTTTCCCCTT‑GAGGCCAAG‑CCCCAGATTCCGCAAG‑AAGAAACC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTGCGACGTGGAAGGGACTGTACGCCAG‑ATCCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑gcg < 1:255111/230‑1 (MQ=255) ttAAACGAAAATACGGGCAACATACATCGATTAT‑GCGGGGATTCGTT‑CCCTTTGCTGGTGCTTTAATTTTTCCCGTG‑GAGTCCGAT‑CTCCAGAACCCGCGAA‑AAAAAAGC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGTTTACGATGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGc < 1:444266/239‑1 (MQ=255) aaCCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGTGTTTAGT‑CCCGTTACTTGCGACCTAATTATTATCCTT‑TTTGCCGAT‑CTCCCGAATCCGCCAG‑CAGAAAAC‑CCCCCCCTGGTGGCCCAAGCCGGCGAAAGTTACGACGTGGGTGGGACGGTTCGGCAGAAACCCCCAGG‑CCGCCGGGTTCCTTAAACCCC‑TCCCGAGAAGAGTAAACCGCTTATTCATGCGcacaacggcac > 1:333737/1‑234 (MQ=255) gCAATTCCGGGCACATTTCAGGGATTAT‑GGCGGGATCCAGC‑AACGTTCCTGGCAACTAAATTATTCCCCTT‑GAGGCCGAT‑CCCCAAAACCCGCCAG‑AAAAATCC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTAGGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCg < 1:522021/239‑1 (MQ=255) ttACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATgg < 2:583008/239‑1 (MQ=255) caacaagtCAGCGTTTAG‑GGGGGGATCCAGT‑CAGTTTACTGGCGACTTAATTATTCCCCTG‑GAGGCCGAT‑CCCCAGAACCCCCCAG‑AAAAAACC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGAt < 1:538376/231‑1 (MQ=255) aaaCAGTCAGGGATTAG‑GGGGGAAGCCAGC‑CGCGTTGTGGGCGACATAATTATTCCCCTG‑GTTGCCGAG‑CTCAGGAACCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGAAAAAGCCGAGGAAGGTTACGACGTGGTAGGGCCGGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTa < 1:987187/238‑1 (MQ=255) aaaTTCAGCGTTTAT‑GGGGGGTTTCAGC‑AACGTTCCTGGGGATTAATTTTTTCCCCTG‑GAGGCCGAT‑CCCAAGAATCCCCAGG‑AAGAATCC‑CCCCGCCGGGGGGCAAAACCCGATGAGGGTTACGAGGTGGTAGGGACTGTCCGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACg < 1:589919/237‑1 (MQ=255) ggttAG‑GGCGGAATTCAGC‑CGTGTTCGT‑GCGGCTTAAATTATACCCTTAGAGGCCGAT‑CTCCAAAACCCTCCAA‑AAGAAATC‑CCCCGCCGGGTGGAAAAAGCCGATGAAGGTTACGACGTGGTGGGGCCTGTACGCCAG‑ACCCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTa < 1:1206403/234‑1 (MQ=255) tAT‑GGCGGGATTCAGT‑CACGTTCCTGGCGACTTAATTTTTCCCCTT‑GATCCCGAT‑CTCCAGAAACCGCCAG‑AAGAAACC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTGGGGATTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTAtgctgc < 2:928314/239‑1 (MQ=255) aTTCAGT‑CACGTGACGGGAGATTTAATTATGCCCCTG‑TGTGCAGAT‑GTCCAGAACCCGCCAG‑AAGAAATC‑CCCCGCCTGGGGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTAt < 1:1070730/238‑1 (MQ=255) cGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAACCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCata < 2:1139454/239‑1 (MQ=255) gTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTa > 1:720222/1‑206 (MQ=255) gTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTa < 2:720222/206‑1 (MQ=255) cTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTc > 2:297502/1‑239 (MQ=255) tGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcg > 1:460712/1‑239 (MQ=255) ggCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AGGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGGAGGGACGGTACGCCAG‑AACCGCCAGGACAGGTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCTCACCACTGGCAAAGCGATGGGTGATTACGGTGGTATTCTTCGCGCCTCTCGCCGTCATATTGTcgt > 1:236727/1‑238 (MQ=255) gACTTAATTATTCCCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg < 2:845536/238‑1 (MQ=255) aCTTATTTATTCCCCTG‑GATGCCGAT‑CCCCAAAAGCGGCAGA‑AAGAAACC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGTTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcg < 1:297560/239‑1 (MQ=255) aCTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCCTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcg > 2:872031/1‑239 (MQ=255) ttAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcgat > 2:475296/1‑239 (MQ=255) attcCCCTT‑GATGCCGAT‑CTCCAAAATCCCCGAG‑AAGAAATC‑CCCCGCCTGGTGCCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACGGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa < 2:185516/239‑1 (MQ=255) tccccGT‑GATGCCAAT‑CGCCGAAACCCGCCAA‑AAAAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACt < 2:518576/237‑1 (MQ=255) aCCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACt > 2:158310/1‑238 (MQ=255) cTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCa > 2:896004/1‑239 (MQ=255) gATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 2:651384/1‑239 (MQ=255) gATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 2:651234/1‑239 (MQ=255) gATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGa > 1:1038544/1‑239 (MQ=255) | AAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAG‑TAGCGATAATTCC‑GCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAAC‑AGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTAT‑GGCGGGATTCAGT‑CACGTTACTGGCGACTTAATTATTACCCTT‑GATGCCGAT‑CTCCAGAATCCGCCAG‑AAGAAATC‑CCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAG‑AACCGCCAGGACAGCTGGTTTCGTAAAACCGC‑TTCGAAGATGATTAACCGGCTTATTCA‑GCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGA > NC_000913/2367131‑2367604 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |