New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2883759	57 (0.980)	3 (0.050)	3/510	NT	5.0%	coding (378/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein
	?	NC_000913	= 2883890	59 (1.030)					coding (247/1509 nt)	casA	CRISP RNA (crRNA) containing Cascade antiviral complex protein

ATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTA  >  NC_000913/2883475‑2884047                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                 ataGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCCTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATtcg                                                                                                                                                                                                                                                                                              >  1:406088/1‑289 (MQ=255)      ctaaTTGGACTTGATAGGGTTAAGCCAGGTATGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTGTTTTAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTcgcg                                                                                                                                                                                                                                                                                         <  1:107631/286‑1 (MQ=255)                 tGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTAccc                                                                                                                                                                                                                                                                               >  1:499471/1‑288 (MQ=255)                                 ggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTcc                                                                                                                                                                                                                                                              >  2:488630/1‑289 (MQ=255)                                  gtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCa                                                                                                                                                                                                                                                             >  1:98281/1‑289 (MQ=255)                                       tttgttTTCCGGATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGACTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTg                                                                                                                                                                                                                                                          <  1:517782/284‑1 (MQ=255)                                                        aTTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCttt                                                                                                                                                                                                                                       >  1:481533/1‑289 (MQ=255)                                                              tAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACCTCATTTGCTTTGaca                                                                                                                                                                                                                                   >  2:237023/1‑287 (MQ=255)                                                                         gttggAAGACGAGGTAATGTGAGGACATTAAGTAAAACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCACCACGTAAACCGCTTTTTAAACCACCACCAAAATCTTGTGCCTGATTCTCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGACTGCa                                                                                                                                                                                                                      <  1:358175/285‑1 (MQ=255)                                                                           ttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATa                                                                                                                                                                                                                    <  2:58685/289‑1 (MQ=255)                                                                           ttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATa                                                                                                                                                                                                                    <  1:460806/289‑1 (MQ=255)                                                                                         aTGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGc                                                                                                                                                                                                      <  1:196903/289‑1 (MQ=255)                                                                                           gtgAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAACCGCATTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTCCTTTGACACCTTTGGTCTGCATAAAGGGCTGTTCTCCGt                                                                                                                                                                                                    >  1:188804/1‑289 (MQ=255)                                                                                             gAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCt                                                                                                                                                                                                                                <  2:501001/259‑1 (MQ=255)                                                                                             gAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCt                                                                                                                                                                                                                                >  1:501001/1‑259 (MQ=255)                                                                                                gACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGATCTGCGTGATTa                                                                                                                                                                                               >  2:361166/1‑289 (MQ=255)                                                                                                 aCATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTa                                                                                                                                                                                               <  2:481533/288‑1 (MQ=255)                                                                                                   aTTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAgg                                                                                                                                                                                            <  1:152100/289‑1 (MQ=255)                                                                                                          aaCACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGaa                                                                                                                                                                                       <  2:188804/287‑1 (MQ=255)                                                                                                            cacCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAActcatcgcgccgtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttggct                                                                                                                                                                                   <  2:436727‑M1/289‑112 (MQ=255)                                                                                                             acCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACata                                                                                                                                                                                   >  2:97881/1‑288 (MQ=255)                                                                                                                 ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCGTCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACAtatcta                                                                                                                                                                               >  1:93142/1‑288 (MQ=255)                                                                                                                 ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACAtatcta                                                                                                                                                                               >  1:364387/1‑288 (MQ=255)                                                                                                                 ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTCGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACACATGCACAATTCGTCGCGCCGCTTACCCCATCCAACAGCTTTTCCATTGGAGTCACCTCATTTGCTTCGACCCCTTTGTTCTGCCTAAAAGGACGTTCTGCGTGATTAAGGTAGCACAtacctaa                                                                                                                                                                              >  2:500367/1‑288 (MQ=255)                                                                                                                 ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTCTTAAAACCACCACCAAAACCTGGTACCTGATTCTCCTGGTCGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGCTTTTCCATTGGAGTCACAGCATTTGCTTTGACACCTTTGGTCTGCAGAAAGGGATGTTCTGCGTGATTAGCGTAGAACAtatcta                                                                                                                                                                               >  2:500371/1‑288 (MQ=255)                                                                                                                      cGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACg                                                                                                                                                                         >  1:323947/1‑289 (MQ=255)                                                                                                                            tcgatcCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGcgcg                                                                                                                                                                    <  2:99776/288‑1 (MQ=255)                                                                                                                                        aCGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCCTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGa                                                                                                                                                        <  2:406088/288‑1 (MQ=255)                                                                                                                                                         tgtTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCGTCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAg                                                                                                                                       <  2:93142/288‑1 (MQ=255)                                                                                                                                                         tgtTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAg                                                                                                                                       <  2:98281/288‑1 (MQ=255)                                                                                                                                                            tcctccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGa                                                                                                                                   <  1:97881/289‑1 (MQ=255)                                                                                                                                                                ccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAActcatcgcgccgtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttgg                                                                                                                                                                                     >  1:75104‑M1/1‑126 (MQ=255)                                                                                                                                                                ccACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAActcatcgcgccgtggatagatatgttctaccttaatcacgcagaacatccctttatgcagaccaaaggtgtcaaagcaaatgatgtgactccaatggaaaaactgttgg                                                                                                                                                                                     <  2:75104‑M1/235‑110 (MQ=255)                                                                                                                                                                   cGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTa                                                                                                                            >  2:147362/1‑289 (MQ=255)                                                                                                                                                                   cGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTa                                                                                                                            >  2:389655/1‑289 (MQ=255)                                                                                                                                                                        aCCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGa                                                                                                                       <  2:141193/289‑1 (MQ=255)                                                                                                                                                                             ttttAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCg                                                                                                                  <  1:147362/289‑1 (MQ=255)                                                                                                                                                                             ttttAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCg                                                                                                                  <  2:499471/289‑1 (MQ=255)                                                                                                                                                                                        ccaccaAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACg                                                                                                        >  1:13678/1‑288 (MQ=255)                                                                                                                                                                                                   tGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCC‑‑‑CCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCggg                                                                                         >  2:448568/1‑289 (MQ=255)                                                                                                                                                                                                     gTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCgg                                                                                          >  1:346512/1‑289 (MQ=255)                                                                                                                                                                                                      tGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCggg                                                                                         >  1:531692/1‑289 (MQ=255)                                                                                                                                                                                                           gATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGAt                                                                                    >  2:195185/1‑289 (MQ=255)                                                                                                                                                                                                            aTTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGCGTTGTTGAAACCCATCTTCAGTGAGCGGATTCTTTATGCGATg                                                                                                                     >  1:217635/1‑255 (MQ=255)                                                                                                                                                                                                                             aCGCAATCGCAGTGCACCAACAACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCC‑‑‑CCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACcag                                                               <  1:448568/289‑1 (MQ=255)                                                                                                                                                                                                                              cGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAAcc                                                                 >  1:206623/1‑289 (MQ=255)                                                                                                                                                                                                                                cAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACcag                                                               <  1:488630/289‑1 (MQ=255)                                                                                                                                                                                                                                 aaTCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACcag                                                               <  2:346512/288‑1 (MQ=255)                                                                                                                                                                                                                                 aaTCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACcag                                                               <  2:364387/288‑1 (MQ=255)                                                                                                                                                                                                                                 aaTCGAAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACcag                                                               <  2:110082/288‑1 (MQ=255)                                                                                                                                                                                                                                             tCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCg                                                  >  2:52361/1‑289 (MQ=255)                                                                                                                                                                                                                                               caccacATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGc                                                <  2:206623/289‑1 (MQ=255)                                                                                                                                                                                                                                               caccacATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGc                                                <  1:389655/289‑1 (MQ=255)                                                                                                                                                                                                                                                 ccacATAATGCTTCACCCTGCTCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGTGTGATAAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACCCATCTTCAGTGAGCGGTTTCATTATGCGATGTGGAATTTCAACGTCATCTTTTGCAGGGGCGTTAATTCGCCCATTGCAAACCAGCCGTGCTAAAGCGGcta                                              >  1:84989/1‑287 (MQ=255)                                                                                                                                                                                                                                                       aaTGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCa                                        >  2:453858/1‑289 (MQ=255)                                                                                                                                                                                                                                                              cACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTTGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGAt                                                                                                                                  >  1:200413/1‑192 (MQ=255)                                                                                                                                                                                                                                                              cACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTTGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGAt                                                                                                                                  <  2:200413/192‑1 (MQ=255)                                                                                                                                                                                                                                                                              attgaCAAATGCCCAATTCGTCGCGCCGCTTACCCCCGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAAt                 <  2:437308/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                 gaCAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGc              <  2:323947/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                   cAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCa            <  1:52361/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                        gCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGAt       <  1:195185/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                           caATTCCTGGCCCCGCTTAGCCCAGTCAACAGTTTTTCCACTTGAGTCACATCATCTGCTTGAAGACCTTTGGTGTGCATAAAGGGAAGTTCTGCGTGATTAAGGTAGAGCATATCTATCCACGGTGTGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGCTTCATTATGCGCTGTCGAAATTCAACGTCAGGTTTTGCCGGGGCGATAATTTGCCCAATGCAAAACAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGAtctc    <  1:500367/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                             aTTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTa  <  2:13678/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                 ATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAATTCGTCGCGCCGCTTACCCCAGCCAACAGTTTTTCCATTGGAGTCACATCATTTGCTTTGACACCTTTGGTCTGCATAAAGGGATGTTCTGCGTGATTAAGGTAGAACATATCTATCCACGGCGCGATGAGTTGTTGAAACTCATCTTCAGTGAGCGGATTCATTATGCGATGTCGAAATTCAACGTCATCTTTTGCCGGGGCGATAATTTGCCCAATGCAAACCAGCAGTGCTAAAGCGGCCAGTTCCATATCGTCACGGGGCAAACTTAATCGCCACTGATCTCTA  >  NC_000913/2883475‑2884047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.