Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 71 [0] [0] 72 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)65 (1.080) 52/268 0.1 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG  >  NC_000913/1978365‑1978640
                                                                                                                                         |                                                                                                                                          
ccttattctgatctaagatttTTCCTATATCGACGCAACTGTATTCGTCACTACACGCACATACAACGGAGGGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACGCTCAATTACTTAACATAAATGtataa                                                                                                                                       <  1:468279‑M1/133‑6 (MQ=255)
ccttatACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                       <  1:291233‑M1/141‑6 (MQ=255)
 tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACGTAAATGtataag                                                                                                                                      >  1:384503‑M1/1‑137 (MQ=255)
 tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGaataag                                                                                                                                      >  2:536888‑M1/1‑137 (MQ=255)
  ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTGCATTACTTAACCTAAGTGtctgagc                                                                                                                                     >  1:503765‑M1/1‑136 (MQ=255)
      acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATCCATGtataagtcata                                                                                                                                 >  1:740034‑M1/1‑132 (MQ=255)
       cTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                <  1:1048965‑M1/143‑13 (MQ=255)
       cTTATCGAGGATTTTACCGAAATCGACGCAACTGTACCCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCACTTACTTAACATAAATGtataagtcatac                                                                                                                                <  1:480214‑M1/143‑13 (MQ=255)
           tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTGTCAATAGTGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                            <  2:132596‑M1/143‑17 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                          >  2:450824‑M1/1‑125 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                          >  1:684987‑M1/1‑125 (MQ=255)
              gacactgttcctaaatCGACGCAACTGTCCTCTTCACTACACGCACATACAACGGATGGGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                         <  2:584646‑M1/136‑20 (MQ=255)
                 aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                      <  1:336452‑M1/143‑23 (MQ=255)
                  tttttCCTAAATCGAGGGAACAGTACGCGTCACGACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                     <  1:47132‑M1/143‑24 (MQ=255)
                    tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                   <  1:1087923‑M1/143‑26 (MQ=255)
                         tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATCTTCAATAATGAGTCATGCAGATCACAAAAAACAATCAATTACTTAACATAAATGtataagacatactttggatttggtagaatt                                                                                                              >  2:74116‑M1/1‑113 (MQ=255)
                             tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacgtcatacttttgttttgggtgtatttcaa                                                                                                          >  1:951405‑M1/1‑109 (MQ=255)
                                  gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                     <  1:1090667‑M1/143‑40 (MQ=255)
                                   cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                    >  1:675466‑M1/1‑103 (MQ=255)
                                              gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                         <  2:666436‑M1/143‑52 (MQ=255)
                                              gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                         <  1:445801‑M1/143‑52 (MQ=255)
                                              gTCACTACACGCACATACAACGGAGGGGGGCTGCGATATTAAACCATAGTTTGTGCAGATCACACACAATACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                         <  1:465243‑M1/143‑52 (MQ=255)
                                               tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                        >  1:483200‑M1/1‑91 (MQ=255)
                                                 aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcactctgtcacaaagtttttcgc                                                                                      >  2:1018626‑M1/1‑89 (MQ=255)
                                                   tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAACTCCATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta                                                                                    >  1:1035245‑M1/1‑87 (MQ=255)
                                                     cacGCACATCCAACGCAGGGGGGCTGTGATTTTCAATAATGCGTGATGCAGATCACACCAAACACTCAATTTCTTAACATAAATGtataagtaatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                  <  2:337643‑M1/143‑59 (MQ=255)
                                                      acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                 >  1:1038568‑M1/1‑84 (MQ=255)
                                                      acGCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                 <  1:899330‑M1/143‑60 (MQ=255)
                                                        gCACATACAACGGAGGTGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACTCAAAACACTCTATTACTTAACTTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                               <  2:13131‑M1/143‑62 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                               <  1:285132‑M1/143‑62 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATAACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggagtatttaaatctggtcaaaagtttctacctactcga                                                                               >  2:997630‑M1/1‑82 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGGGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttggttttgggtgtattacaattacatgaaaagattttcgctacacga                                                                               >  2:141994‑M1/1‑82 (MQ=255)
                                                          acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                             <  2:704544‑M1/143‑64 (MQ=255)
                                                            atgcaacGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                           <  2:236089‑M1/140‑66 (MQ=255)
                                                             tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                          >  2:55938‑M1/1‑77 (MQ=255)
                                                                aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATATATGtataagtcatacttttgccttgcctctcactttatctgttaaaaagtttttcgctacgctagcaaggca                                                                       >  2:122723‑M1/1‑74 (MQ=255)
                                                                  cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtcaaaaagtttttcgctacgctagcaagcaaaa                                                                     >  1:1024886‑M1/1‑72 (MQ=255)
                                                                      gggtggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtatatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                 <  2:86110‑M1/143‑76 (MQ=255)
                                                                              gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                         <  1:131530‑M1/143‑84 (MQ=255)
                                                                               cGATTTTCAAAAATGCGTGATGCAGATTACATCAAACTGTTTTTGTCTGAACAGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                                                        <  2:834774‑M1/143‑85 (MQ=255)
                                                                                gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAGATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                       >  1:577404‑M1/1‑58 (MQ=255)
                                                                                gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                       >  2:1111139‑M1/1‑58 (MQ=255)
                                                                                   tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                    >  1:26585‑M1/1‑55 (MQ=255)
                                                                                    ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtcttttaatcagttaaatagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                   >  1:1106019‑M1/1‑54 (MQ=255)
                                                                                     tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttgtgtattgggtgtatttcaatctgttaaaaagttgttcgctacggtggcaagcaaaactgcaacaggagttatcga                                                  >  2:994089‑M1/1‑53 (MQ=255)
                                                                                       aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaatactcgaaa                                                >  2:63887‑M1/1‑51 (MQ=255)
                                                                                         taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                              <  2:860977‑M1/143‑95 (MQ=255)
                                                                                          aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgagatgg                                             >  1:850637‑M1/1‑48 (MQ=255)
                                                                                             gCGTGATGCAGATAACACAAAACACTGTATTACTTAACATAAATGtataagtcatacgtttgttttgggtgtatttcaatctgtgaaaaagtttttcactacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                          <  2:503765‑M1/143‑99 (MQ=255)
                                                                                               gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttggtttgggtgtatttcaatctgttaaaaagtttttcgctaagctagcaagcaaaaaggaaacaggaatattcgaaatgggatgt                                        >  2:32699‑M1/1‑43 (MQ=255)
                                                                                                tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                       <  2:316102‑M1/143‑102 (MQ=255)
                                                                                                tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagaaacaatgaaacaggaataatcgaaatgggatgtt                                       <  2:675466‑M1/143‑102 (MQ=255)
                                                                                                    gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgc                                   >  1:1010124‑M1/1‑38 (MQ=255)
                                                                                                    gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaacctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaactggcctgtcgcgc                                   >  1:486716‑M1/1‑38 (MQ=255)
                                                                                                     cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                  >  2:313051‑M1/1‑37 (MQ=255)
                                                                                                     cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggctgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatggaacaggaataatcgaaatgggatgttgcgca                                  >  2:805556‑M1/1‑37 (MQ=255)
                                                                                                        agctcacaaaacGCGCAATTACTTAACTTAAGTGtataagtcatacttctgtggtgggtgtatgtcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                               <  2:840767‑M1/139‑110 (MQ=255)
                                                                                                                aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgttagcaagcaaaattgaaacaggaataatcgaaatgggatgttgagcacagtcaaaaaa                       >  2:86718‑M1/1‑26 (MQ=255)
                                                                                                                 aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                      <  2:483200‑M1/143‑119 (MQ=255)
                                                                                                                     cTCAATTACTTAACATAAGTGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                  <  2:431645‑M1/143‑123 (MQ=255)
                                                                                                                      tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttcttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                 <  1:1020717‑M1/143‑124 (MQ=255)
                                                                                                                        aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggattaatcgaaatgggttgttgcgcacagtcaaaataactcaccg               >  1:473637‑M1/1‑18 (MQ=255)
                                                                                                                              ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata         <  1:782077‑M1/143‑132 (MQ=255)
                                                                                                                                 aCATATATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc      <  2:858086‑M1/143‑135 (MQ=255)
                                                                                                                                 aCATAAATGtatgagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc      <  1:74116‑M1/143‑135 (MQ=255)
                                                                                                                                  cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca     <  1:1094040‑M1/143‑136 (MQ=255)
                                                                                                                                   aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggctgttgcgcaccgtcttattaactcaccgtatataatcct    >  1:691859‑M1/1‑7 (MQ=255)
                                                                                                                                   aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat    >  1:698390‑M1/1‑7 (MQ=255)
                                                                                                                                   aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat    <  2:674936‑M1/143‑137 (MQ=255)
                                                                                                                                   aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaaactgttgagctaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtaaaaataactcactctaattaatcat    >  2:840905‑M1/1‑7 (MQ=255)
                                                                                                                                     aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct  <  2:577404‑M1/143‑139 (MQ=255)
                                                                                                                                         |                                                                                                                                          
CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG  >  NC_000913/1978365‑1978640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.