New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1189119	64 (1.000)	4 (0.060)	4/276	8.9	5.9%	coding (658/1461 nt)	phoQ	sensory histidine kinase in two‑component regulatory system with PhoP
	?	NC_000913	= 1189142	66 (1.070)					coding (635/1461 nt)	phoQ	sensory histidine kinase in two‑component regulatory system with PhoP
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTGGCATCCGCGATGTTGCCGG  >  NC_000913/1189001‑1189284                                                                                                                                               |                                                                                                                                               tctatttaTCGGTTGAGGTTTCGTACCAGATTGGTCAGTTGCCGGGTTGTGCCTGGATCGCCCAAGTGGCATGTATGGTGTATGTACGT‑GCGTTCTTCTTTTGCCAAGCCTTCGATGGTGCGTAAACTCCACCAGGCGGCGAc                                                                                                                                               <  2:234544/136‑1 (MQ=255)    aaCAGTCGGTTCAGGTTTCGTACCAGACGGGTCAGTCCGCGCGTGGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTGCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCca                                                                                                                                            <  1:675644/143‑1 (MQ=255)      cAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAACCTCCACCAGGCGGCGGCCcaca                                                                                                                                          >  2:1046296/1‑143 (MQ=255)             ttCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCgg                                                                                                                                   >  2:409307/1‑143 (MQ=255)                agtctccttACCTGACGGGTCCGTTCTCGCTTTGTCCCTGGATTGACCAATTCGCGGTTATGTTCT‑TCCAGTTCTCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGAt                                                                                                                                <  1:162111/135‑1 (MQ=255)                aGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCTATTCGCGGTTCTGTTCT‑TCCCGTTCGCGGCCTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTTCACCAGGCGGCGACCCACAGCAGCGGGAt                                                                                                                                <  2:745417/143‑1 (MQ=255)                   tttCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCAc                                                                                                                             >  1:452308/1‑143 (MQ=255)                    ctggTACCCGCCTGGTCGGTTCTCGAGTTCTGGATGGATTGTGCAATTGGCGCTTCTTTTCT‑ACCAGTTCGCTGACTTCTTTTGCCAGTGCTTCGCTCGGGAGTGAGTACCTCTATTCGGCGACCCACAGCAGCGGGATCACt                                                                                                                            <  2:971874/140‑1 (MQ=255)                       gTACCAGACCGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAc                                                                                                                         <  1:1047372/143‑1 (MQ=255)                         aCCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcag                                                                                                                       <  1:363976/143‑1 (MQ=255)                          ccAGACTGGTCTGTTCTCGCGTCGCGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTCCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcagc                                                                                                                      <  1:41346/143‑1 (MQ=255)                          ccAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACGTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcagc                                                                                                                      <  2:210086/143‑1 (MQ=255)                          ccAGACGGGTCTGTTCTCGCGTTGTGGCTGGATTGCGCAATCCGCGGTTATGTCCT‑TCCCGTTCGCGGACTTCTTGTGCCAGGGCCTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcagc                                                                                                                      <  2:558266/143‑1 (MQ=255)                                 ggTCAGTTCTCGCGTTGTGGCTGGATTGCGCAATTCGCGGTTATGTGCT‑GCCAGCTCAACCACTCCTTTCGCCAGGGCGTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg                                                                                                               <  2:11180/143‑1 (MQ=255)                                  gTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGc                                                                                                              >  2:570249/1‑143 (MQ=255)                                     aGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTga                                                                                                           <  1:736237/143‑1 (MQ=255)                                       ttCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTgaga                                                                                                         <  1:482730/143‑1 (MQ=255)                                       ttCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTgaga                                                                                                         <  1:487096/143‑1 (MQ=255)                                       ttCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTgaga                                                                                                         <  1:761009/143‑1 (MQ=255)                                         ctcGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCCCTAACAGCAGATTGGCTGAGAGc                                                                                                       >  1:105699/1‑143 (MQ=255)                                         ctcGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGACCACTCACAGCAGATTGGCTGAGAGc                                                                                                       >  1:48237/1‑143 (MQ=255)                                          tcGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGca                                                                                                      >  2:701708/1‑143 (MQ=255)                                             cgTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGCGCACAt                                                                                                   >  1:385532/1‑143 (MQ=255)                                                     cTGGGTTGAGAAATTTGCGTGTGTGTTCT‑TCCAGTGGGCGGACGTCGTTTGCCAGGGCTTCGAGGGGGCGTAAGCTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAAc                                                                                           <  1:564795/143‑1 (MQ=255)                                                      tGGATTGAGCAATTCGCGGTTATCTTCT‑TCCAGTTGGCGGACGTCTTTTGCCAGGGCTTCGATGAGGGGTAAACTCGACCAGGCGTCGACCCGCAGCAGCGGGACCGCTAACGGCAGCGTGGCTGCGAGcacgcagcgtatcc                                                                                          >  2:153184/1‑132 (MQ=255)                                                          ttGAGCAATTCGCGGTTAGGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCt                                                                                      <  1:1014749/143‑1 (MQ=255)                                                           tGAGCGATTCGCGGTGCTGTGCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTc                                                                                     <  2:567229/143‑1 (MQ=255)                                                           gcaGCCATTCGCGGTTATGTGCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTc                                                                                     <  2:343510/141‑1 (MQ=255)                                                            gAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCCGCTcc                                                                                    >  1:193674/1‑143 (MQ=255)                                                               cAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTCCGATGGGGCGTAAACTCCCCCACGCGGCGACCCACAGCACCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATCAACCAGCTCCAgc                                                                                 >  1:212333/1‑142 (MQ=255)                                                               cAATTCGCGGTTATGTTCT‑GCCAGTTCGCGGACTTCGTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGa                                                                                 <  2:113160/143‑1 (MQ=255)                                                                aaTTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGGTCACTAACAGCAGATTGACTGCGAGCACGTAGCTACACCAGCCCCAgcc                                                                                >  1:293229/1‑141 (MQ=255)                                                                 aTTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTGACAGCAGATTGGCTGAGAGCACATAGCTAAACCAGCTCCAGGcc                                                                               >  1:776453/1‑143 (MQ=255)                                                                  ttCGCGGTGATGTTCG‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCa                                                                              <  1:782059/143‑1 (MQ=255)                                                                      cgGTTATGTTCT‑TCCAGGTCGCGGACTTCTGTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCAtata                                                                          <  1:709527/143‑1 (MQ=255)                                                                           aTGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGacc                                                                     >  2:151257/1‑141 (MQ=255)                                                                              ttct‑tcCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCatatgaggactta                                                                  >  2:59440/1‑134 (MQ=255)                                                                                 ctgctggtgcgcgGACTTCTGTGGCCAGGGCTTCGAGCGGGCGGAACCGCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATCAACCAGCTCCAGACCATATAGGAACttttt                                                                <  2:298824/134‑1 (MQ=255)                                                                                   tcCAGTTCGCTGAATTCTTTTTCCAGGGCTGCAATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAg                                                              <  1:383302/143‑1 (MQ=255)                                                                                      aGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATCCACCAGCTCCAGACCCTATACGAACTTTTTAGCTc                                                           >  1:860328/1‑143 (MQ=255)                                                                                       gTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTcc                                                          >  1:822496/1‑143 (MQ=255)                                                                                         gcgcgGACGTCTTTGGCCAGGGCTGCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCAc                                                        <  2:752252/142‑1 (MQ=255)                                                                                           gcgGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCTGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCCCCAGACCATATAGGCACTATTTAGCACCACCg                                                      >  2:892696/1‑143 (MQ=255)                                                                                           gcgGACTTCTTTTGCCAGGGCTTCGATGCAGCGTAAACTACACCAGGCGACCACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAACCCAGCCCCAGCCCATCGCGGAACTTCTTGGccaccccc                                                      >  2:479880/1‑136 (MQ=255)                                                                                              gagtgctgtggCCGGGGCGTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCACCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGAGAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGaa                                                   <  2:547941/133‑1 (MQ=255)                                                                                                cgtcacgtGCCGGGGCCTCAATGGGGCGTAAACGCCACCAGGCGGCGGCCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCGGACCATATAGGAACTTTTTAGCTCCACCGGAATg                                                 <  2:773666/136‑1 (MQ=255)                                                                                                 ttcttTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGCTTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATgg                                                >  1:678679/1‑143 (MQ=255)                                                                                                   cttTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTa                                              >  1:480355/1‑143 (MQ=255)                                                                                                    ttttGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCGCCGGACTGGTAt                                             >  1:83544/1‑143 (MQ=255)                                                                                                    ttttGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGATACAACGGAATGGTAt                                             >  2:388398/1‑143 (MQ=255)                                                                                                           aGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATAGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATACGAACTTTTTAGCTCCACCGGAATGGTATccaccac                                      >  2:416169/1‑143 (MQ=255)                                                                                                                  cGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATg                               <  2:452308/143‑1 (MQ=255)                                                                                                                  agATCGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATg                               <  1:866253/142‑1 (MQ=255)                                                                                                                       gggCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTACCAGCAGATTGGCTGCGCGCACAGAGATAATCCTGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTaa                          <  1:42648/143‑1 (MQ=255)                                                                                                                         gCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATTGCTAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCCCCACAATGGCTaact                        >  2:284748/1‑141 (MQ=255)                                                                                                                            tAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTg                     <  1:1070051/143‑1 (MQ=255)                                                                                                                            tAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTg                     <  1:570249/143‑1 (MQ=255)                                                                                                                             actcTCCACCAGTCGGCGACGCACAGCAGCGAGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTgg                    <  2:331944/140‑1 (MQ=255)                                                                                                                             aaaCTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAAGCAGCTCCAGACCATATAGGAACTTTTTAGCTCTACCGGAATGGTATTCAGCACTACACTGGTTAATTTTgg                    >  1:327788/1‑143 (MQ=255)                                                                                                                                cTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTGGCAt                 >  1:741271/1‑143 (MQ=255)                                                                                                                                 tCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGCTTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAACGGTACCCACCACCACACTGGTTAATTTTGGCacc                >  2:213061/1‑141 (MQ=255)                                                                                                                                   caccaGGCGGTGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGACCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCCCCACGCTGGTTAATTTTGGCATCcg              >  2:360694/1‑143 (MQ=255)                                                                                                                                        ggcggcGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCGCAATGGTTAATTTTGGCATCCGCGGTg         >  1:554889/1‑143 (MQ=255)                                                                                                                                         gcggcgACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATGTAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAGTGGTTAGTTTTGGCATCCGCGATGt        >  1:834162/1‑143 (MQ=255)                                                                                                                                          cggcgACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATCTAGGAACTTTTTAGCCACAAACGCGTTAATGCCTCCACTACGATGGTTAATTTTGGCATCCGCGCTGtt       >  1:1102534/1‑143 (MQ=255)                                                                                                                                              gACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGACTGGTATCCACCACCACAATGGTTACTTTTGGCATCCGCGaattcgccg   >  2:225754/1‑135 (MQ=255)                                                                                                                                               aCCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTGGCATCCGCGATGTTGCCgg  <  1:974142/143‑1 (MQ=255)                                                                                                                                               aCCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTGGCATCCGCGATGTTGCCgg  <  2:822496/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               TTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAATTTTGGCATCCGCGATGTTGCCGG  >  NC_000913/1189001‑1189284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.