New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078058 (0.130)48 (0.850) 39/252 0.4 88.0% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 6 (0.110)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209464‑1209740
                                                                                                                                          |                                                                                                                                          
aGGCAATGTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                        >  1:332505‑M2/1‑139 (MQ=255)
      tttatttGTCGGATAAGCCTTTGCCAGTTCCGGCTATTCTTCAGCAGAAAACGCGGCACCATTGCATGTCAGCCAGCCTGTTGGCGGAGTGCCTGAAGGCCACGGACCCGGGACACTACCCGGTAATGCAGAGcctcctccca                                                                                                                                  <  2:913561‑M2/143‑11 (MQ=255)
           ttGGCGGATAAGCCTCTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca                                                                                                                             >  2:32115‑M2/1‑128 (MQ=255)
              tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttcccccaaaccaccg                                                                                                                          <  2:906608‑M2/143‑19 (MQ=255)
                  gtaCGCCTTTGCCAGTTCCGGGCATTCTTCAGCAGAGAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt                                                                                                                      >  2:536661‑M2/2‑121 (MQ=255)
                   tAAGCCTTTGCGAGTTCCGGGTATTCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc                                                                                                                     >  1:1022510‑M2/1‑120 (MQ=255)
                     aGCCGTTGCTTGTTCCGGGTATTCTTCATTGGAAGAAGCGGCACCATTGCATGTCAGCCGGGCTGTTGGCGGAGTGGCTGAAGGCCATTGAACCGGGACACCAACATGTAAGGCAGAGccttctcccaaaccaaggttttcga                                                                                                                   >  2:441404‑M2/1‑118 (MQ=255)
                       ccTTTGCCAGTCCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCAGTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                 >  1:40731‑M2/1‑116 (MQ=255)
                             gcAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag                                                                                                           <  2:149529/142‑1 (MQ=255)
                             ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaacccaaggtattcgagagccgat                                                                                                           <  2:144071‑M2/143‑34 (MQ=255)
                              cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt                                                                                                          <  2:750427‑M2/143‑35 (MQ=255)
                               aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg                                                                                                         >  1:643034‑M2/1‑108 (MQ=255)
                                    cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacag                                                                                                    >  1:782838‑M2/1‑103 (MQ=255)
                                     gggtgtcctggagcagaaaaagcggcaCCAGCGTATTGCAGAGAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt                                                                                                   >  1:353322‑M2/12‑102 (MQ=255)
                                     gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGccctctcacaaaccaaagcaatcgagagccactagcacaac                                                                                                   <  1:847751‑M2/143‑42 (MQ=255)
                                       gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagattttcgagagccgtttgcacagtgc                                                                                                 <  1:725678‑M2/143‑44 (MQ=255)
                                        tATTCTTCGGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc                                                                                                >  2:530389‑M2/1‑99 (MQ=255)
                                          ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttcgcaccgtgccat                                                                                              <  2:922790‑M2/143‑47 (MQ=255)
                                           tcttcAGCAGAAAAAGCGGCACCATTGCATTCCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaagcaaggttttcgagagccgtttgcacagtgccatc                                                                                             <  2:421035‑M2/143‑48 (MQ=255)
                                                 gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt                                                                                       <  2:984408‑M2/143‑54 (MQ=255)
                                                  cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccggttgcacagcgccatccgatttg                                                                                      <  2:1010773‑M2/143‑55 (MQ=255)
                                                  cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTAGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttatcgagagccgtttgcacagtgccatccgagttg                                                                                      <  2:616731‑M2/143‑55 (MQ=255)
                                                         gggcgcaccAGTGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc                                                                               >  2:401541‑M2/5‑82 (MQ=255)
                                                           cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                             <  1:360380/143‑1 (MQ=255)
                                                              gacCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac                                                                          >  1:618421‑M2/2‑77 (MQ=255)
                                                                 cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgacaaacgga                                                                       <  2:243034‑M2/143‑70 (MQ=255)
                                                                    tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattc                                                                    <  1:631431‑M2/143‑73 (MQ=255)
                                                                    ggcagctcaggcaGCCTGTTGGCGGAGTGGCTGAAGGGCACGGAACCGGGACACCAACAGGTAATTCATTGccttctcaccaaccatggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattc                                                                    >  2:1031315‑M2/7‑71 (MQ=255)
                                                                      cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCATCTCCCAAACCAACGGTTATGAAAATGACGAAACAACAAGCAAATGGCACCATTCCTGCTCTCACCAgggg                                                                  >  2:662589/1‑143 (MQ=255)
                                                                       aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggactcttg                                                                 <  1:729413‑M2/143‑76 (MQ=255)
                                                                       aTCTCAGCCAGCCTGTTGGCGGAGTGGGTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttg                                                                 >  2:43239‑M2/1‑68 (MQ=255)
                                                                        tgacagccagcctgTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaacccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                >  1:919483‑M2/4‑67 (MQ=255)
                                                                         ctcAGCCAGCCTGTTTGCGGAGTGGCCGACGCCCACGGCACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg                                                               >  1:390949‑M2/2‑66 (MQ=255)
                                                                              ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGCACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgctatcgccccacggaatccggcgacccc                                                          <  2:284311‑M2/143‑83 (MQ=255)
                                                                                    tgtgctccgattggcgtAATGCCACGGAACCGGGACCCCAACAGGTTATGCAGAGccttctcccaaaccaaggttttcgagggccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                    >  2:857622‑M2/9‑55 (MQ=255)
                                                                                    tggtggCGGAGCGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                    >  1:278803‑M2/1‑55 (MQ=255)
                                                                                    tGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                    >  2:616841‑M2/1‑55 (MQ=255)
                                                                                        ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagcttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgc                                                >  1:582772‑M2/1‑51 (MQ=255)
                                                                                         gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                               >  1:33855/1‑143 (MQ=255)
                                                                                          cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgc                                              >  1:958996‑M2/1‑49 (MQ=255)
                                                                                                   tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggcttcttgcggcttaacagccgcgcgcgcagtacgg                                     <  2:638082‑M2/143‑104 (MQ=255)
                                                                                                    gAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCAGCTATAACAAGGGGGAATAAACATGCTTATTGGCTATGTAcgcg                                    >  1:832993/1‑143 (MQ=255)
                                                                                                    gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                    >  1:750427‑M2/1‑39 (MQ=255)
                                                                                                     aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctggcggcttaacagcagcgcgcgaagtgcggta                                   <  1:360883‑M2/143‑106 (MQ=255)
                                                                                                       ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtctgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag                                 >  2:977734‑M2/1‑36 (MQ=255)
                                                                                                        gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaggt                                <  2:989002‑M2/143‑109 (MQ=255)
                                                                                                         ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagta                               >  1:953027‑M2/1‑34 (MQ=255)
                                                                                                          cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtta                              <  1:683273‑M2/143‑111 (MQ=255)
                                                                                                                  cGGGACTCCAACAGGTAATGCAGGGccttctcccaatccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaatcggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt                      >  2:917949‑M2/1‑25 (MQ=255)
                                                                                                                  cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgacatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt                      >  1:700282‑M2/1‑25 (MQ=255)
                                                                                                                        acCAACAGGTAATGCAGAGccttctcccaaaccaagattttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcgtgcggcttaacaacaacgcgggaaggagcggaagtacctggtcgggccgcc                <  2:662529‑M2/143‑125 (MQ=255)
                                                                                                                          cAACAGGTAATGCAGCGccttctcccaagccaaggttttcgagagccgcttgcacagtgccatccgctttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgctcc              >  1:843833‑M2/1‑17 (MQ=255)
                                                                                                                          cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgcggcttcacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc              <  1:600930‑M2/143‑127 (MQ=255)
                                                                                                                            aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtcagtaactggtcgtgccgcccctt            <  2:1073486‑M2/143‑129 (MQ=255)
                                                                                                                                 tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtacgtaactggtcgtgccgccgcttctcca       <  1:792402‑M2/143‑134 (MQ=255)
                                                                                                                                   aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa     <  2:33855/143‑1 (MQ=255)
                                                                                                                                     gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatctcgccacacggcttcttgcggcttaacagcagcgcgcgccgtgcgctaagtaactggtcgtgccgccccttctccaggct   <  1:861103‑M2/143‑138 (MQ=255)
                                                                                                                                      cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatccaccacaggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtacctgggagtgccgccccacctccaggccg  <  2:1029281‑M2/143‑139 (MQ=255)
                                                                                                                                          |                                                                                                                                          
AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209464‑1209740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.