| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 8 (0.130) | 48 (0.850) | 39/252 | 0.4 | 88.0% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 6 (0.110) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG > NC_000913/1209464‑1209740 | aGGCAATGTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt > 1:332505‑M2/1‑139 (MQ=255) tttatttGTCGGATAAGCCTTTGCCAGTTCCGGCTATTCTTCAGCAGAAAACGCGGCACCATTGCATGTCAGCCAGCCTGTTGGCGGAGTGCCTGAAGGCCACGGACCCGGGACACTACCCGGTAATGCAGAGcctcctccca < 2:913561‑M2/143‑11 (MQ=255) ttGGCGGATAAGCCTCTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca > 2:32115‑M2/1‑128 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttcccccaaaccaccg < 2:906608‑M2/143‑19 (MQ=255) gtaCGCCTTTGCCAGTTCCGGGCATTCTTCAGCAGAGAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt > 2:536661‑M2/2‑121 (MQ=255) tAAGCCTTTGCGAGTTCCGGGTATTCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:1022510‑M2/1‑120 (MQ=255) aGCCGTTGCTTGTTCCGGGTATTCTTCATTGGAAGAAGCGGCACCATTGCATGTCAGCCGGGCTGTTGGCGGAGTGGCTGAAGGCCATTGAACCGGGACACCAACATGTAAGGCAGAGccttctcccaaaccaaggttttcga > 2:441404‑M2/1‑118 (MQ=255) ccTTTGCCAGTCCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCAGTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga > 1:40731‑M2/1‑116 (MQ=255) gcAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag < 2:149529/142‑1 (MQ=255) ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaacccaaggtattcgagagccgat < 2:144071‑M2/143‑34 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt < 2:750427‑M2/143‑35 (MQ=255) aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg > 1:643034‑M2/1‑108 (MQ=255) cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacag > 1:782838‑M2/1‑103 (MQ=255) gggtgtcctggagcagaaaaagcggcaCCAGCGTATTGCAGAGAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:353322‑M2/12‑102 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGccctctcacaaaccaaagcaatcgagagccactagcacaac < 1:847751‑M2/143‑42 (MQ=255) gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagattttcgagagccgtttgcacagtgc < 1:725678‑M2/143‑44 (MQ=255) tATTCTTCGGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc > 2:530389‑M2/1‑99 (MQ=255) ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttcgcaccgtgccat < 2:922790‑M2/143‑47 (MQ=255) tcttcAGCAGAAAAAGCGGCACCATTGCATTCCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaagcaaggttttcgagagccgtttgcacagtgccatc < 2:421035‑M2/143‑48 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt < 2:984408‑M2/143‑54 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccggttgcacagcgccatccgatttg < 2:1010773‑M2/143‑55 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTAGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttatcgagagccgtttgcacagtgccatccgagttg < 2:616731‑M2/143‑55 (MQ=255) gggcgcaccAGTGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc > 2:401541‑M2/5‑82 (MQ=255) cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 1:360380/143‑1 (MQ=255) gacCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac > 1:618421‑M2/2‑77 (MQ=255) cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgacaaacgga < 2:243034‑M2/143‑70 (MQ=255) tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattc < 1:631431‑M2/143‑73 (MQ=255) ggcagctcaggcaGCCTGTTGGCGGAGTGGCTGAAGGGCACGGAACCGGGACACCAACAGGTAATTCATTGccttctcaccaaccatggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattc > 2:1031315‑M2/7‑71 (MQ=255) cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCATCTCCCAAACCAACGGTTATGAAAATGACGAAACAACAAGCAAATGGCACCATTCCTGCTCTCACCAgggg > 2:662589/1‑143 (MQ=255) aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggactcttg < 1:729413‑M2/143‑76 (MQ=255) aTCTCAGCCAGCCTGTTGGCGGAGTGGGTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttg > 2:43239‑M2/1‑68 (MQ=255) tgacagccagcctgTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaacccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc > 1:919483‑M2/4‑67 (MQ=255) ctcAGCCAGCCTGTTTGCGGAGTGGCCGACGCCCACGGCACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg > 1:390949‑M2/2‑66 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGCACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgctatcgccccacggaatccggcgacccc < 2:284311‑M2/143‑83 (MQ=255) tgtgctccgattggcgtAATGCCACGGAACCGGGACCCCAACAGGTTATGCAGAGccttctcccaaaccaaggttttcgagggccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca > 2:857622‑M2/9‑55 (MQ=255) tggtggCGGAGCGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca > 1:278803‑M2/1‑55 (MQ=255) tGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca > 2:616841‑M2/1‑55 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagcttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgc > 1:582772‑M2/1‑51 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg > 1:33855/1‑143 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgc > 1:958996‑M2/1‑49 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggcttcttgcggcttaacagccgcgcgcgcagtacgg < 2:638082‑M2/143‑104 (MQ=255) gAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCAGCTATAACAAGGGGGAATAAACATGCTTATTGGCTATGTAcgcg > 1:832993/1‑143 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt > 1:750427‑M2/1‑39 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctggcggcttaacagcagcgcgcgaagtgcggta < 1:360883‑M2/143‑106 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtctgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag > 2:977734‑M2/1‑36 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaggt < 2:989002‑M2/143‑109 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagta > 1:953027‑M2/1‑34 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtta < 1:683273‑M2/143‑111 (MQ=255) cGGGACTCCAACAGGTAATGCAGGGccttctcccaatccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaatcggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt > 2:917949‑M2/1‑25 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgacatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt > 1:700282‑M2/1‑25 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaagattttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcgtgcggcttaacaacaacgcgggaaggagcggaagtacctggtcgggccgcc < 2:662529‑M2/143‑125 (MQ=255) cAACAGGTAATGCAGCGccttctcccaagccaaggttttcgagagccgcttgcacagtgccatccgctttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgctcc > 1:843833‑M2/1‑17 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgcggcttcacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc < 1:600930‑M2/143‑127 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtcagtaactggtcgtgccgcccctt < 2:1073486‑M2/143‑129 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtacgtaactggtcgtgccgccgcttctcca < 1:792402‑M2/143‑134 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa < 2:33855/143‑1 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatctcgccacacggcttcttgcggcttaacagcagcgcgcgccgtgcgctaagtaactggtcgtgccgccccttctccaggct < 1:861103‑M2/143‑138 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatccaccacaggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtacctgggagtgccgccccacctccaggccg < 2:1029281‑M2/143‑139 (MQ=255) | AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG > NC_000913/1209464‑1209740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |