New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	5 (0.080)	78 (1.220)	50/284	0.2	94.0%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

TCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2101607‑2101886                                                                                                                                               |                                                                                                                                           tCTTCACAGTACACAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaag                                                                                                                                            <  1:243479/143‑1 (MQ=255)   ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagga                                                                                                                                          >  1:975023/1‑143 (MQ=255)          tgcagtaagcatccTTGCTCGCAGTCATCTACACGCCCAAACACTGATAAACGTACCAGCATAAATGATCCTGTGCACCTATCAACAACCTTATCATAATAGATACTTTCTTTAGGCATTTTTGTTTTATTCAGGAAGGTGCg                                                                                                                                   <  2:859947/131‑1 (MQ=255)             aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAAt                                                                                                                                <  2:503799/143‑1 (MQ=255)                aaGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAg                                                                                                                             >  1:871327/1‑143 (MQ=255)                   tagccTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  2:513050/140‑1 (MQ=255)                   tAACCTTGATCGAAGCCATTTACACGCACAAACTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAGCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:103111/143‑1 (MQ=255)                   caactgtcaTCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  2:305191/135‑1 (MQ=255)                       cTTGATCGAAGCCATTTACACGCACAAAATCGGAAAAGCGTACCAGCATAAATGATCCTGCGCACCAATCGAAAACCGTATAAGAATGGGTGCTTTCTTTAGGCGTTCTTGTTTCAGTAAGGAAGGAGCGCATAAGCGAGGac                                                                                                                      >  1:621067/1‑142 (MQ=255)                         tGATCGAAGCCATTTACACGCACAAAATCTGAAACACGTACCAGCATAAATGATCCTGCGCACCAATCACCAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAt                                                                                                                    <  1:519937/143‑1 (MQ=255)                             cGAAGCCATCTACACGCAAAACATCTGCAAAACGTACACGCTTCACCATTCCTGCGCACCAATCAACACCCTTACCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                                <  1:806975/143‑1 (MQ=255)                              gAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                               >  1:433063/1‑143 (MQ=255)                                    aTTTACACGCACAAAATATGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                         <  1:234729/143‑1 (MQ=255)                                          acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                   >  1:390340/1‑143 (MQ=255)                                            gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGCATGACCCAGt                                                                                                 >  2:711828/1‑143 (MQ=255)                                             cacaAAATCTGAAAGACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                                                                <  2:108363/143‑1 (MQ=255)                                             cacaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                                                                >  1:496804/1‑143 (MQ=255)                                                aaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                                                             <  2:942757/143‑1 (MQ=255)                                                    tCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                         >  1:772220/1‑143 (MQ=255)                                                       gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatatcat‑tta                                                                                     >  2:787271/1‑142 (MQ=255)                                                       gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcat‑ttc                                                                                     >  1:862266/1‑143 (MQ=255)                                                                acgaGCATAAATGATCCTGCGCACCAATCAACATCCGTATCAGAATAGATACTTGCTTTAGGAATTTTTGTTTTATTAAGGAATGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGttt                                                                            <  2:273594/140‑1 (MQ=255)                                                                       tAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGa                                                                     <  1:659697/143‑1 (MQ=255)                                                                              tCCTGCGCACCAATCCACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTtc                                                              <  1:355267/143‑1 (MQ=255)                                                                              tCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTGTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTtc                                                              <  2:463743/143‑1 (MQ=255)                                                                                cTGCGCACCAATCAACAACCGTATCAGCATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGCTTTTTtctc                                                            >  1:160257/1‑143 (MQ=255)                                                                                              acaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg                                              >  2:2255/1‑143 (MQ=255)                                                                                                       tCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTTATTGCCTTGAATCAGCCt                                     >  2:949096/1‑143 (MQ=255)                                                                                                          gAATAGATACTTTCTTTAGGAATTTTTTTTTTTTTTTTGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTTACTCAGTCATTTCAT‑TTCTTCTTGTTTGTGCCGATTTTTTCTCCCTTTATTGTCTTgttttttcttttt                                  >  2:1114987/1‑131 (MQ=17)                                                                                                          gAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTAAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCGAtt                                  <  2:975023/143‑1 (MQ=255)                                                                                                            aTAGATACTTTCTTTAGGAATTTTTGTCTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                <  2:1060232/143‑1 (MQ=255)                                                                                                                aTACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAcc                            >  1:924539/1‑143 (MQ=255)                                                                                                                aTACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAcc                            >  1:370627/1‑143 (MQ=255)                                                                                                                   ctttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGGGGGGAAATCCTGCCCGGATG‑CGTTGTAATGGTATAAGCGTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTCAGACCGtt                         >  1:1112818/1‑143 (MQ=12)                                                                                                                     ttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc                       >  2:292047/1‑143 (MQ=255)                                                                                                                        tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                    <  2:541973/143‑1 (MQ=255)                                                                                                                         ttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                   <  2:534457/143‑1 (MQ=255)                                                                                                                          tAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                  >  2:197101/1‑143 (MQ=255)                                                                                                                              aaTTTTTGTTTTATTAATGAAGGTGCGAATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCCTTTTCGAGCCGATTTTTTCTCCCGTAAATGCTTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAtt              <  2:143195/143‑1 (MQ=14)                                                                                                                               aTTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCGTGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCTGCCTATTTAGACCGTTTCTTCGCCCttt             >  1:186955/1‑143 (MQ=255)                                                                                                                               aTTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCAGACTCACTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt             <  2:385964/143‑1 (MQ=255)                                                                                                                                      ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTACGCCGt      >  1:173335/1‑143 (MQ=21)                                                                                                                                      ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt      >  1:793534/1‑143 (MQ=34)                                                                                                                                      ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt      <  1:798191/143‑1 (MQ=34)                                                                                                                                      ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTCTCTTCGCCATTTAAGGCGt      >  1:1093280/1‑143 (MQ=21)                                                                                                                                      ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTATCGGCTGACTAAGTCATTTCAT‑TTGTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCTGCCTATTTAGTCCGTTCCTTTGCCCCTTAAGACgc      >  2:976157/1‑142 (MQ=11)                                                                                                                                          attaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTGATGGTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATATAAGACgctctc  >  2:654173/1‑138 (MQ=11)                                                                                                                                               |                                                                                                                                           TCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT‑TTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2101607‑2101886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.