New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 66825162 (0.940)5 (0.080) 5/266 8.6 7.9% coding (465/468 nt) rlmH 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent
?NC_000913 = 668256 59 (0.950)coding (460/468 nt) rlmH 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/668101‑668251
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttatcacCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTG  <  NC_000913/668256‑668116
                                                                                                                                                                                                                                                                                                    
CAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCC                                                                                                                                                       <  1:334751/143‑1
   gccaGCGAGACGCACGCGCGTCAGCAGCAAAATCCCCGAAAAGGCGACCAGCGCCCCGCGCACAAACATCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTT                                                                                                                                                    <  2:121256/139‑1
    ttgcgcgtaggcgCGCCGGTCAGCAGCAAACTCCCCATACAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTA                                                                                                                                                   <  2:536757/130‑1
    tcGGCGATAAGCCCGCCGGGCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTA                                                                                                                                                   <  1:807792/141‑1
       ccgatccGCACTCCCGTCAGCATCACAACCCCCAAACACGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCCAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCA                                                                                                                                                <  2:839018/136‑1
       GCGATAAGCACGCCCGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCACACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGCTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCA                                                                                                                                                <  2:1132661/143‑1
        CGATAAGCACGCCGGTCAGCAACAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAACGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTCCTCACAGCTCCCGTATCAC                                                                                                                                               >  2:92345/1‑143
                    CGGTCAGCAGCAAAAGCCCCAAACAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAA                                                                                                                                   <  2:386778/143‑1
                     GGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAAG                                                                                                                                  <  2:307813/143‑1
                        CAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAAGGGA                                                                                                                               <  2:453059/143‑1
                                                           GGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAG                                                                                                                    >  1:230169/1‑119
                                                           GGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAG                                                                                                                    <  2:230169/119‑1
                                                                                                                                                   TCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGGTTTTGCTGCTGACCGGCG    >  2:956593/1‑143
                                                                                                                                                     ACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTG  <  1:476951/143‑1
                                                                                                                                                     ACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTG  >  1:507898/1‑143
                                                                                                                                                                                                                                                                                                    
CAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/668101‑668251
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttatcacCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTG  <  NC_000913/668256‑668116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.