New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 64135453 (1.190)3 (0.070) 3/270 6.5 6.0% intergenic (+36/+85) ahpF/uspG alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12
?NC_000913 = 641366 43 (1.010)intergenic (+48/+73) ahpF/uspG alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGTTA  >  NC_000913/641214‑641493
                                                                                                                                            |                                                                                                                                           
gagtGTACGTCGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGTCTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCgg                                                                                                                                           >  2:749074/4‑143 (MQ=255)
gactcgacgacgGTTCCGTACAAGCACATCATCATCGCCACGGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCgg                                                                                                                                           <  2:441948/137‑1 (MQ=255)
gACTGTAAGGCGGTTGCTTAAAGCCAGTTTATTATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGCTTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCgg                                                                                                                                           <  2:267906/143‑1 (MQ=255)
   tGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAGCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGGCGCCGGGGt                                                                                                                                        >  1:250122/1‑143 (MQ=255)
    gTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTc                                                                                                                                       <  2:526273/143‑1 (MQ=255)
      acgacgGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCaa                                                                                                                                     >  2:95982/1‑143 (MQ=255)
            ggtCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTGGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCTCCGGGGTCAAACCTgg                                                                                                                               <  2:646714/141‑1 (MQ=255)
            gTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTgg                                                                                                                               <  2:598965/143‑1 (MQ=255)
             ttCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGCCGTATATCGCACCCGCAATTGCTTAGCCGCCGGGGTCAAACCTggc                                                                                                                              >  2:160943/1‑143 (MQ=255)
             ttCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTggc                                                                                                                              >  2:117318/1‑143 (MQ=255)
               ccGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTggcgg                                                                                                                            >  2:737500/1‑143 (MQ=255)
                      aGCAGACCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCtttttt                                                                                                                     <  1:79109/143‑1 (MQ=255)
                          gatcgcgatcGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATATGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATgg                                                                                                                 <  2:722330/136‑1 (MQ=255)
                                 atcGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTaaa                                                                                                          <  1:765531/143‑1 (MQ=255)
                                     ccACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGc                                                                                                      <  1:508259/143‑1 (MQ=255)
                                       aCTGGCGAATGTGCCAAATCCTCTCTGAGTGCCCTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGccc                                                                                                    <  1:62697/143‑1 (MQ=255)
                                       aCTGGCGAAGGTGCCCAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGccc                                                                                                    <  1:286002/143‑1 (MQ=255)
                                         tGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCccg                                                                                                  >  1:346926/1‑143 (MQ=255)
                                             gAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCgg                                                                                              >  1:519668/1‑143 (MQ=255)
                                                  ttccAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATgg                                                                                         <  1:19297/141‑1 (MQ=255)
                                                      aaaGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCGTTTTTATGGCATTAAAAAGCCCCGCCGGGCTGGCTcc                                                                                     >  1:752040/1‑143 (MQ=255)
                                                      aaaGCCTCTCTGAGTGCTTTTGACTACCTGAGTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAACTGCTTAGCCGCCGGGGTCAAAACTAGCGGCTTTATTATGGCATTAAAAAGCCCCGCCGTGATGGCTcc                                                                                     >  2:623931/1‑143 (MQ=255)
                                                          ccTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAATGCCCCGCCGGGATCGCTCCGGGc                                                                                 >  2:638445/1‑143 (MQ=255)
                                                            tctctGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCACCGCCGGGATGGCTCCGGGCAg                                                                               >  1:720984/1‑143 (MQ=255)
                                                              tctGAGTGCTTTTGACTACCTGATTCGCACCAAATCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAggg                                                                             <  1:95982/143‑1 (MQ=255)
                                                                    tGCTGTTGACTACCTGATTCGCACCAAAACGGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGAt                                                                       <  2:771450/143‑1 (MQ=255)
                                                                       ttttGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGGCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACt                                                                    >  2:196080/1‑143 (MQ=255)
                                                                       ttttGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTGTATGGGATTAAAAAGACCCGCCGGGATGGCACAGGGCAGGGCGGGATaag                                                                    >  2:528583/1‑141 (MQ=255)
                                                                                ccTGATTCGCACCAAAGCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGc                                                           <  2:729895/143‑1 (MQ=255)
                                                                                 cTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCa                                                          >  2:728826/1‑143 (MQ=255)
                                                                                   gATTCGCACCAAAACTGCATAAGGAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAGCGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTGTGGCAAt                                                        >  2:294592/1‑143 (MQ=255)
                                                                                   gATTCCCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAAt                                                        <  1:299356/143‑1 (MQ=255)
                                                                                      tcggatctggagttcATAAGTAGATGTAAGTTTCACGTGTACTTGCTTATCCGCTGGGGTCAAACCTGGCGGCTCTTTTGTGGCATTAACAAGCCCCGCCGGGATCGCTCCAGGTAGGGCGGGATACTTATTCTGGCAATTaa                                                     <  2:116973/129‑1 (MQ=255)
                                                                                       cGCACCAAGTCTGCATAGGAGGAGGTAAGATTCACCTGCAAGTGCTTGGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAAc                                                    <  2:709512/143‑1 (MQ=255)
                                                                                       cGCACCAAAACTGCATAAGAAGAAGTAAGCTTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAAc                                                    <  2:519668/143‑1 (MQ=255)
                                                                                             aaaaCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACaa                                              <  1:115042/143‑1 (MQ=255)
                                                                                             aaaaCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGCATGGCTCCGGGCAGGGCGCGATACTTATTCTGGCACTTAACGCACaa                                              >  1:202392/1‑143 (MQ=255)
                                                                                             aaaaCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCGTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGCTGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTGACGCACaa                                              >  1:449059/1‑143 (MQ=255)
                                                                                                        ggaaggagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAACCCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGc                                   <  2:690002/142‑1 (MQ=255)
                                                                                                        agaagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGc                                   >  1:357297/1‑143 (MQ=255)
                                                                                                         gaagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCTCCGGGATGGCTCCGGGCAGGGCGGGCTACTTATTCTGGCAATTAACGCACAACCAGCACCGTCa                                  >  1:370556/1‑143 (MQ=255)
                                                                                                                tAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCCTTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggc                           >  2:331149/1‑143 (MQ=255)
                                                                                                                tAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGGTACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggc                           >  2:375680/1‑143 (MQ=255)
                                                                                                                   gATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggcgtg                        >  1:372765/1‑143 (MQ=255)
                                                                                                                    aTTCAGCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTGTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggcgtgg                       <  2:443632/143‑1 (MQ=255)
                                                                                                                         gcTGTAATGGCTGAGCGGCCGGGGTCAAACCTGGCGGCTTTTTTGTGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGAt                  <  2:505518/142‑1 (MQ=255)
                                                                                                                          cTGCAATTGCTGAGCCGCCGGGGTCACACCTGAAGGATAGTTTGTTGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATc                 <  1:737500/143‑1 (MQ=255)
                                                                                                                             cAATTGCTTAGCCGCCGGGGTCACACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCCGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGCGGCGGaccccg              >  2:697320/1‑138 (MQ=255)
                                                                                                                                    ttAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAgg       >  2:687674/1‑143 (MQ=255)
                                                                                                                                      aGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCTGCACCGGAAGATTGGCGTGGCGGAtaatgcactgagcg     >  1:285226/1‑130 (MQ=255)
                                                                                                                                      aGCCGCCGGGGTCAAACCTGGCGGCGTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCCATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCg     <  2:662879/143‑1 (MQ=255)
                                                                                                                                       gccgccGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGt    >  1:264372/1‑143 (MQ=255)
                                                                                                                                         cgccgGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCCCGCTCGAGGCGTTa  >  1:705361/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                           
GACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGTTA  >  NC_000913/641214‑641493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.