New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 641354	53 (1.190)	3 (0.070)	3/270	6.5	6.0%	intergenic (+36/+85)	ahpF/uspG	alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12
	?	NC_000913	= 641366	43 (1.010)					intergenic (+48/+73)	ahpF/uspG	alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGTTA  >  NC_000913/641214‑641493                                                                                                                                             |                                                                                                                                            gagtGTACGTCGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGTCTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCgg                                                                                                                                           >  2:749074/4‑143 (MQ=255) gactcgacgacgGTTCCGTACAAGCACATCATCATCGCCACGGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCgg                                                                                                                                           <  2:441948/137‑1 (MQ=255) gACTGTAAGGCGGTTGCTTAAAGCCAGTTTATTATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGCTTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCgg                                                                                                                                           <  2:267906/143‑1 (MQ=255)    tGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAGCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGGCGCCGGGGt                                                                                                                                        >  1:250122/1‑143 (MQ=255)     gTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTc                                                                                                                                       <  2:526273/143‑1 (MQ=255)       acgacgGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCaa                                                                                                                                     >  2:95982/1‑143 (MQ=255)             ggtCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTGGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCTCCGGGGTCAAACCTgg                                                                                                                               <  2:646714/141‑1 (MQ=255)             gTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTgg                                                                                                                               <  2:598965/143‑1 (MQ=255)              ttCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGCCGTATATCGCACCCGCAATTGCTTAGCCGCCGGGGTCAAACCTggc                                                                                                                              >  2:160943/1‑143 (MQ=255)              ttCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTggc                                                                                                                              >  2:117318/1‑143 (MQ=255)                ccGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTggcgg                                                                                                                            >  2:737500/1‑143 (MQ=255)                       aGCAGACCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCtttttt                                                                                                                     <  1:79109/143‑1 (MQ=255)                           gatcgcgatcGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATATGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATgg                                                                                                                 <  2:722330/136‑1 (MQ=255)                                  atcGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTaaa                                                                                                          <  1:765531/143‑1 (MQ=255)                                      ccACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGc                                                                                                      <  1:508259/143‑1 (MQ=255)                                        aCTGGCGAATGTGCCAAATCCTCTCTGAGTGCCCTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGccc                                                                                                    <  1:62697/143‑1 (MQ=255)                                        aCTGGCGAAGGTGCCCAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGccc                                                                                                    <  1:286002/143‑1 (MQ=255)                                          tGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCccg                                                                                                  >  1:346926/1‑143 (MQ=255)                                              gAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCgg                                                                                              >  1:519668/1‑143 (MQ=255)                                                   ttccAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATgg                                                                                         <  1:19297/141‑1 (MQ=255)                                                       aaaGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCGTTTTTATGGCATTAAAAAGCCCCGCCGGGCTGGCTcc                                                                                     >  1:752040/1‑143 (MQ=255)                                                       aaaGCCTCTCTGAGTGCTTTTGACTACCTGAGTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAACTGCTTAGCCGCCGGGGTCAAAACTAGCGGCTTTATTATGGCATTAAAAAGCCCCGCCGTGATGGCTcc                                                                                     >  2:623931/1‑143 (MQ=255)                                                           ccTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAATGCCCCGCCGGGATCGCTCCGGGc                                                                                 >  2:638445/1‑143 (MQ=255)                                                             tctctGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCACCGCCGGGATGGCTCCGGGCAg                                                                               >  1:720984/1‑143 (MQ=255)                                                               tctGAGTGCTTTTGACTACCTGATTCGCACCAAATCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAggg                                                                             <  1:95982/143‑1 (MQ=255)                                                                     tGCTGTTGACTACCTGATTCGCACCAAAACGGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGAt                                                                       <  2:771450/143‑1 (MQ=255)                                                                        ttttGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGGCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACt                                                                    >  2:196080/1‑143 (MQ=255)                                                                        ttttGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTGTATGGGATTAAAAAGACCCGCCGGGATGGCACAGGGCAGGGCGGGATaag                                                                    >  2:528583/1‑141 (MQ=255)                                                                                 ccTGATTCGCACCAAAGCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGc                                                           <  2:729895/143‑1 (MQ=255)                                                                                  cTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCa                                                          >  2:728826/1‑143 (MQ=255)                                                                                    gATTCGCACCAAAACTGCATAAGGAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAGCGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTGTGGCAAt                                                        >  2:294592/1‑143 (MQ=255)                                                                                    gATTCCCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAAt                                                        <  1:299356/143‑1 (MQ=255)                                                                                       tcggatctggagttcATAAGTAGATGTAAGTTTCACGTGTACTTGCTTATCCGCTGGGGTCAAACCTGGCGGCTCTTTTGTGGCATTAACAAGCCCCGCCGGGATCGCTCCAGGTAGGGCGGGATACTTATTCTGGCAATTaa                                                     <  2:116973/129‑1 (MQ=255)                                                                                        cGCACCAAGTCTGCATAGGAGGAGGTAAGATTCACCTGCAAGTGCTTGGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAAc                                                    <  2:709512/143‑1 (MQ=255)                                                                                        cGCACCAAAACTGCATAAGAAGAAGTAAGCTTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAAc                                                    <  2:519668/143‑1 (MQ=255)                                                                                              aaaaCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACaa                                              <  1:115042/143‑1 (MQ=255)                                                                                              aaaaCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGCATGGCTCCGGGCAGGGCGCGATACTTATTCTGGCACTTAACGCACaa                                              >  1:202392/1‑143 (MQ=255)                                                                                              aaaaCTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCGTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGCTGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTGACGCACaa                                              >  1:449059/1‑143 (MQ=255)                                                                                                         ggaaggagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAACCCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGc                                   <  2:690002/142‑1 (MQ=255)                                                                                                         agaagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGc                                   >  1:357297/1‑143 (MQ=255)                                                                                                          gaagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCTCCGGGATGGCTCCGGGCAGGGCGGGCTACTTATTCTGGCAATTAACGCACAACCAGCACCGTCa                                  >  1:370556/1‑143 (MQ=255)                                                                                                                 tAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCCTTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggc                           >  2:331149/1‑143 (MQ=255)                                                                                                                 tAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGGTACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggc                           >  2:375680/1‑143 (MQ=255)                                                                                                                    gATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggcgtg                        >  1:372765/1‑143 (MQ=255)                                                                                                                     aTTCAGCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTGTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATtggcgtgg                       <  2:443632/143‑1 (MQ=255)                                                                                                                          gcTGTAATGGCTGAGCGGCCGGGGTCAAACCTGGCGGCTTTTTTGTGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGAt                  <  2:505518/142‑1 (MQ=255)                                                                                                                           cTGCAATTGCTGAGCCGCCGGGGTCACACCTGAAGGATAGTTTGTTGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATc                 <  1:737500/143‑1 (MQ=255)                                                                                                                              cAATTGCTTAGCCGCCGGGGTCACACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCCGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGCGGCGGaccccg              >  2:697320/1‑138 (MQ=255)                                                                                                                                     ttAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAgg       >  2:687674/1‑143 (MQ=255)                                                                                                                                       aGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCTGCACCGGAAGATTGGCGTGGCGGAtaatgcactgagcg     >  1:285226/1‑130 (MQ=255)                                                                                                                                       aGCCGCCGGGGTCAAACCTGGCGGCGTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCCATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCg     <  2:662879/143‑1 (MQ=255)                                                                                                                                        gccgccGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGt    >  1:264372/1‑143 (MQ=255)                                                                                                                                          cgccgGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCCCGCTCGAGGCGTTa  >  1:705361/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                            GACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGTTA  >  NC_000913/641214‑641493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.