New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078057 (0.160)46 (1.160) 38/252 0.1 88.3% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 6 (0.150)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT  >  NC_000913/1209462‑1209744
                                                                                                                                            |                                                                                                                                              
tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                              <  2:62115‑M2/143‑3 (MQ=255)
  aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCCCGGAACCGGGACACCAACAGGTAATGCAGGGcctt                                                                                                                                            <  1:9147‑M2/143‑5 (MQ=255)
   ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTGATGCAGAGccttc                                                                                                                                           <  2:699926‑M2/143‑6 (MQ=255)
        tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCAGAGTAGCTAAAGGCCACGGAACCGGGACACCAACAGTGACTGCAGAGcctgctcccc                                                                                                                                      <  2:715673‑M2/143‑11 (MQ=255)
               gtcgtctgaGCCGTTCCCAGTTCCGCGTATTCTTCACCAGAAAAAGCGGCCCCATTGCATTTCAGCCAGCCTCTTGGCGGAGTGGCTGAAGGCCACTGAACCGGGACACCAACAGGGAATGCAGAGCTTTCTCCCAAACCaag                                                                                                                               <  2:601849/135‑2 (MQ=255)
                     tAAGCCGTGGCCAGGCCCGGGGATGCTGCGGCAGCAAAAGCGGCGCCATTGCATTGCCGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc                                                                                                                         >  1:127817‑M2/1‑120 (MQ=255)
                        gCCTTTGCCAGTTCCGGGTATTCTTCAGCGGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgag                                                                                                                      <  1:581214‑M2/143‑27 (MQ=255)
                         ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtgttcgagc                                                                                                                     <  1:302616‑M2/143‑28 (MQ=255)
                         ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                     >  1:430539‑M2/1‑116 (MQ=255)
                         ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctaccaaaccaaggttttcgaga                                                                                                                     <  1:604190‑M2/143‑28 (MQ=255)
                           tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                   >  1:66174/1‑143 (MQ=255)
                             tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg                                                                                                                 <  1:633499‑M2/143‑32 (MQ=255)
                               ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCGACAGGTAATGCAGAGccttatcccaaaccaaggtgttcgagagccgtt                                                                                                               <  2:157793‑M2/143‑34 (MQ=255)
                                   ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTACTGCAGAGcattctcccagacgaaggttgtcgagagccgatagca                                                                                                           <  2:42322‑M2/143‑38 (MQ=255)
                                         gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACATTGATGAAAAAGAAGAAATaagaag                                                                                                     >  2:287177/1‑143 (MQ=255)
                                               ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg                                                                                               <  1:342132‑M2/143‑50 (MQ=255)
                                                         aaaGGGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc                                                                                     >  1:581951‑M2/1‑84 (MQ=255)
                                                         aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGTCACGAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcagtttgcacagtgccatccgatttgatctc                                                                                     <  2:193622‑M2/143‑60 (MQ=255)
                                                         aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgatatc                                                                                     <  1:155837‑M2/143‑60 (MQ=255)
                                                            gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc                                                                                  <  1:660874‑M2/143‑63 (MQ=255)
                                                               gCACCATTGCATTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                               <  2:622888/143‑1 (MQ=255)
                                                                cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac                                                                              <  1:418447‑M2/143‑67 (MQ=255)
                                                                  ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgg                                                                            >  1:595075‑M2/1‑75 (MQ=255)
                                                                     ttGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatt                                                                         >  1:438489‑M2/1‑72 (MQ=255)
                                                                                  cgccgtgtggcggtgTCGCGTGAGGCCACGGAACCGGGACACCAACATGTTATGCAGAGccttctcccaagccaaggttttcgagagccgcttgcaccgtgccatccgatttgatatcgccaaacggattcttgcggcttaac                                                            >  2:699565‑M2/8‑59 (MQ=255)
                                                                                    ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacag                                                          <  1:85300‑M2/143‑87 (MQ=255)
                                                                                        tcggcgGAGTGGCTGAAGGCCACGGAACCCGGACCCCAACATGTAATGCAGAGccttctcccaaaccaaggttttcgaaagccctttgcacagtgccgtctgatttgatatcgccaaacggattcttgcggcttaacagcagc                                                      >  2:723554‑M2/3‑53 (MQ=255)
                                                                                         tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGaattttcccaaaccaaggctttccaggggcggttgcacagtgccatccggtttgatatcgccaaacggattcttgcggcttaacagccgcg                                                     <  1:572597‑M2/143‑92 (MQ=255)
                                                                                           gcgcgctggccgaAGGACAAGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaagcaaggtgttctagagccgtttgcacagggccatccgatttgatatcgacaaacggattcttgcggcttaacagcagcgcg                                                   >  1:391435‑M2/7‑50 (MQ=255)
                                                                                           gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttcacagcagcgcg                                                   <  1:301576‑M2/143‑94 (MQ=255)
                                                                                             gggggggcgggcggccacggggccgtGACACCCACAGGTATGGCAGCGccttctcccaaaccaaggttttcgagagccgtttgcacagcgccatccgctttgatatcgccaatcggattcttgcggcttaacagcagcgcgcg                                                 >  2:132830‑M2/13‑48 (MQ=255)
                                                                                                     tGCAGGCTGCGGAACAGGCACACCAACAGGTAGTCCAGAGccttctcccaaaccaaggttttcgagagccgcttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                         >  1:25570‑M2/1‑40 (MQ=255)
                                                                                                     tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                         <  2:617107‑M2/143‑104 (MQ=255)
                                                                                                        aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttttcacagtgccatccgatgtgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                      >  2:615366‑M2/1‑37 (MQ=255)
                                                                                                        aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                      >  1:444217‑M2/1‑37 (MQ=255)
                                                                                                         ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgcgagccgtttgcacagtgccatccgatttgatatcgcaacacggattcttgcggcttaacagaagcgcgcgaagtgcggtaag                                     <  2:420585‑M2/143‑108 (MQ=255)
                                                                                                         ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccgtctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag                                     >  1:466492‑M2/1‑36 (MQ=255)
                                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaa                                  <  1:195700‑M2/143‑111 (MQ=255)
                                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcgtaacagcagcgcgcgaagtgcggtaagtaa                                  <  1:70516‑M2/143‑111 (MQ=255)
                                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggctttcgagagccgtttgcacagtgccatccgatttgatatcgcccaacggcttcttgcggcttcaccgcagcgcgcgcgctgcggtcagtga                                  <  2:537947‑M2/143‑111 (MQ=255)
                                                                                                             aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaccggattcttcgggcgtcacagcagcgcgcgaagtccggtaagtcac                                 <  2:33688‑M2/143‑112 (MQ=255)
                                                                                                             aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                 >  1:432612/1‑143 (MQ=255)
                                                                                                              cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaact                                >  2:633499‑M2/1‑31 (MQ=255)
                                                                                                               ggACCCGGGCCACCAACAGGTACTGCAGAGcctcctcccaatccaatgttttcgagagccggctgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                               >  2:387129‑M2/1‑30 (MQ=255)
                                                                                                               ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                               >  2:520803‑M2/1‑30 (MQ=255)
                                                                                                               gcaaccGGTACACCTACAGGGAATGCAGAGcgttctcccaagccgaggttttcgggagccggtggcacagtggcatccgatttgatatggccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                               >  2:127851‑M2/3‑30 (MQ=255)
                                                                                                                 aaCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgcgcgccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcgtgacagcagcgcgcgaagtgcggtaaggaactggt                             <  1:593632‑M2/143‑116 (MQ=255)
                                                                                                                   ccGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactgctcg                           <  1:633444‑M2/143‑118 (MQ=255)
                                                                                                                    cGGGACACCAACTGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt                          >  2:608977‑M2/1‑25 (MQ=255)
                                                                                                                       ctcaccaccaGTTACTGCAGTGcctactgctagaccatggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacatcagctcgcgaagtgcggtaagtaactggtcgtgcc                       >  2:584989‑M2/3‑22 (MQ=255)
                                                                                                                          acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAGGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGCCCAGacc                    >  1:712158/1‑141 (MQ=255)
                                                                                                                           gcaACAGGTCATGCAGAGccgtcgcccaaaccaaggtgttcgagagccgtctgcacagtgccatccgacttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc                   >  1:639671‑M2/2‑18 (MQ=255)
                                                                                                                            cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                  >  1:159039/1‑143 (MQ=255)
                                                                                                                              tcaGGTAATGCAGAGccttctccccaaccaaggttttcgagagccgtttgcacagtgccatccgatgtgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctt                >  1:704596‑M2/2‑15 (MQ=255)
                                                                                                                                  gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcc            <  1:502315‑M2/143‑133 (MQ=255)
                                                                                                                                     aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg         <  2:696147‑M2/143‑136 (MQ=255)
                                                                                                                                            gcctgcccccaacccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcac  >  1:369053‑M2/1‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                              
TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT  >  NC_000913/1209462‑1209744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.