New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	2 (0.040)	53 (1.190)	35/284	0.2	96.4%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCG  >  NC_000913/2289970‑2290251                                                                                                                                              |                                                                                                                                             aaggtaaggttctgtCTAGTCTTACGGAGATTTCTGCTGATTTCACTGTCGGCGAAGGTAAGTTGATGACTCACGATGAACCCTGTTCTATGGCTCCATATGACAAACATGATCTCATATCAGGGACTTGTGCGCACCTTCCa                                                                                                                                             <  2:337279/129‑1 (MQ=11)    tcaaTCTCTTTTCTGGTCTGACGGCGCTTAATGACATTGAAACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATaa                                                                                                                                          <  2:757175/141‑1 (MQ=11)        tctcTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGcc                                                                                                                                      >  2:426639/1‑142 (MQ=21)          gctTGTCTGGTCTGACGGCGCTTACTGCTGAATTGACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGt                                                                                                                                    <  2:78106/142‑1 (MQ=255)           ctTTTCTGGTCTGTCGGCGCTTACTCCTTGATGCACTGTCGGCGAAGGTAAGTTGATGTCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                                   <  2:157266/143‑1 (MQ=14)             tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGc                                                                                                                                 >  1:421295/1‑143 (MQ=40)                     cTGAGGGCGCGGACCGCTGGATGCCCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCGTCCATAACGCTGTAGCCACCAGaa                                                                                                                         <  2:298116/143‑1 (MQ=14)                      tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCCCCAGAAc                                                                                                                        >  2:537963/1‑143 (MQ=255)                              cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTg                                                                                                                >  1:276864/1‑143 (MQ=255)                               ttACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAAGATGTGGCCACCAGAACAGACATTGc                                                                                                               >  2:169893/1‑143 (MQ=255)                                   tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAACCATTATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGaa                                                                                                           <  1:699409/143‑1 (MQ=255)                                   tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATACCGCTGTAGCCACCACAACAGAAATTACCGaa                                                                                                           >  2:238734/1‑143 (MQ=14)                                    gttttatttattGTCGGCGTATGTAAGTTGATGACTCATTATGTACCCTGTTCTATGGCTCCAGATGACAGTCATGATCTCATATCAGGGATTTGTTCGCACCTTCCATAACGCTGTTGCCTTCAGAACAGATATTGCGGAAc                                                                                                          <  2:656435/132‑1 (MQ=17)                                     ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGCAGCCACCAGAACAGATATCGCGGAACg                                                                                                         >  2:137833/1‑143 (MQ=255)                                       gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGAc                                                                                                       <  1:103679/143‑1 (MQ=255)                                        aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGCACCGATCTTGCGGAACGCCa                                                                                                      >  2:328145/1‑143 (MQ=255)                                        aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACa                                                                                                      >  1:528362/1‑143 (MQ=255)                                        aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATATCATGTCAGGGACTTGTTCGCACATTACATAACGCTGTAGACACCAGAACAGATATTGCGGCACGACa                                                                                                      >  2:443902/1‑143 (MQ=18)                                          ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa                                                                                                    <  1:166495/143‑1 (MQ=255)                                             gctttCGGCGAATGGAAGTTGATGACTCACGCCGAGCCCTGCCCTAGGGCACCAGATCACAAACATGATCACACATCAGGGACTTGTGAGCAGCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAagag                                                                                                 <  2:510904/139‑1 (MQ=255)                                                               ttGATGACTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACGTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                               <  2:123745/143‑1 (MQ=255)                                                               ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                               >  1:129387/1‑143 (MQ=255)                                                                       tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGCCAAAGAGAAACAGAACCAGATTGATGCATTGAg                                                                       >  1:774614/1‑143 (MQ=255)                                                                       tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAg                                                                       >  1:395255/1‑143 (MQ=255)                                                                       tCATGATGAACCATGTTCTATGGCTCCAGATGACAAACATGATCTAATATCAGGGAGTTGTTCGCACATTAGATAATGATTTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAAACAGAGTGATGCATTggg                                                                       >  2:720036/1‑141 (MQ=21)                                                                               aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCCTCACTAACGCTGTAGCCACCAGAACAGATATTGCGGACCGACAAAGAGAAACAGAAACAGACTCAGGCATGGACCGTTCATc                                                               >  2:128551/1‑143 (MQ=21)                                                                                  ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTa                                                            >  1:410353/1‑143 (MQ=255)                                                                                      ttCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGaa                                                        <  2:162035/143‑1 (MQ=255)                                                                                          aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTCGCACCTTCCATAACACTATAGCCATCAGAACAAATATTGCGGAACGACAAAGAAAAACAGAACCAGATTGATGCATTGAACTTTTATACTATGAaatta                                                    >  2:706224/1‑143 (MQ=25)                                                                                          aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACTAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATGCTATGGattta                                                    >  1:37180/1‑143 (MQ=255)                                                                                              cTCCAGATGACAAACCTGATCTCATATCATGGACTGGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCACATTGTTGCATTGAGCTTTCATCCTATGAAATTAATTg                                                <  1:404302/143‑1 (MQ=255)                                                                                              cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                <  2:324655/143‑1 (MQ=255)                                                                                              cTCCAGATGACAAACATGATCTCAAATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                <  1:424262/143‑1 (MQ=255)                                                                                                  aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAACCAGAACAACACTAGACAAGTGAGCTTTCATCCCATGAAAATAATGGCTGt                                            >  2:549568/1‑143 (MQ=25)                                                                                                       aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGCACGACAAAGAGAAACAGAACCAGATTGATGCATCGAGCGTTAATCCTATGAAATTAATTGCTGTTaaac                                       >  2:775568/1‑142 (MQ=255)                                                                                                            cATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                                  >  1:602928/1‑143 (MQ=255)                                                                                                             aTGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg                                 >  2:433631/1‑143 (MQ=255)                                                                                                             aTGATCGCATATCAGGGACTTGTTCGGACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg                                 <  1:761429/143‑1 (MQ=255)                                                                                                                  ctcATAGCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc                            >  2:521784/1‑143 (MQ=255)                                                                                                                   tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa                           >  2:726906/1‑143 (MQ=255)                                                                                                                        tCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTAGGTACAGaaaa                      >  1:13451/1‑143 (MQ=255)                                                                                                                           gggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAGTTGCTGTTAAAAGCATTGGGTACAGAAAATAc                   <  2:410353/143‑1 (MQ=255)                                                                                                                           gggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTCCAGAAAATAc                   >  1:615548/1‑143 (MQ=255)                                                                                                                           gggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAc                   <  2:528362/143‑1 (MQ=255)                                                                                                                           gggACTTGTTCGAACCTTCCATAACGCTGAAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAc                   <  2:165149/143‑1 (MQ=255)                                                                                                                                   ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCt           <  2:395255/143‑1 (MQ=255)                                                                                                                                    tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTc          <  1:281093/143‑1 (MQ=255)                                                                                                                                      gCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa        >  1:572148/1‑143 (MQ=255)                                                                                                                                       cACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCAt       >  1:190657/1‑143 (MQ=255)                                                                                                                                            tCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGCAACAGCACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTATTTGCTGTTACAAGCATTGGGTACAGAGAATACCCATAACTCCATACCCg  >  2:551333/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                             AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCG  >  NC_000913/2289970‑2290251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.