| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423821 = | NA (NA) | 6 (0.140) | 4/272 | 6.0 | 11.3% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946687 | 49 (1.100) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGC > NC_000913/3946551‑3946828 | tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa > 1:641628/1‑143 (MQ=34) aaGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAAGTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCCGAACGCAGAAGCGGTCTGATGACACAg > 2:310993/1‑143 (MQ=255) aGCGGAGCGATGCGTGGAGCCAACCGGGACTAAGGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa < 2:777970/143‑1 (MQ=11) ggggtGCGTTGAGCTAACGGGTTCTATTGGTCCGCGAGGATTAACGTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc < 2:597066/139‑1 (MQ=11) cGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAACGGTCTGATGAAACAGAATTTGcc > 2:504225/1‑143 (MQ=21) aTGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTGACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGGCTGATGAAACAGAATTTGCCTg > 1:743399/1‑143 (MQ=21) gCGTTGGACTAACCGGTACTAATTAGCCGTGAGACTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc < 2:353114/143‑1 (MQ=11) ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc > 1:111512/1‑143 (MQ=34) gAGCTAACCGGTACTAATGTACCGTGAGGCTTATCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCg < 1:509926/143‑1 (MQ=21) tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGACACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc > 1:583657/1‑143 (MQ=25) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGCGGGccc > 1:602432/1‑143 (MQ=25) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa > 1:166016/1‑143 (MQ=35) cGTGAGGCTTAACCTTACAACGCCGGAGATGGTGTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGAGTAAATCAGAGCGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAc < 2:200940/143‑1 (MQ=11) aGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGGTTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAATTCTCGGTCTTCGGTAGCGCGGTGGTCCCACCTGACCCCa > 2:549382/1‑143 (MQ=11) aGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCa > 2:595831/1‑143 (MQ=35) gCTCAACCGTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATg < 1:271858/143‑1 (MQ=25) cgagaccgtagagcGCCGAAGAGGTTGTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAAGCAGAGCGCAGAAGCGGTGTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc < 1:345757/130‑1 (MQ=11) ttAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGGCTGATGAAACAGAACTTGCCTGGCGGCCGTAGCACGGTGGTCCCACCTGACCCCATGca > 2:501595/1‑142 (MQ=255) aCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCgcc > 2:103631/1‑141 (MQ=25) tACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCa < 1:164155/143‑1 (MQ=35) cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTCCAGCCTGATACGGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGa < 2:673790/143‑1 (MQ=21) aaCGGCGTAGATGGTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACATATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTTGTCCCACCTGACCCCATGCCGAACTCAGaa < 2:595749/143‑1 (MQ=11) aaCGCTGAAGATGTTTTGGCGGATGAGAGAAGATTTGCGGCCGGATACAGATTGAATCAGAACGCAGAGGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa < 2:397890/143‑1 (MQ=11) cccaaGATGTTTTGACGGAGGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa < 1:183622/140‑1 (MQ=255) ccGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa < 1:33461/143‑1 (MQ=35) gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGACCCGCCTGACCCCATGCCGAACCAAGAAGTGcaa > 2:628929/1‑143 (MQ=11) aaGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc > 1:551264/1‑143 (MQ=35) aaGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGAGAAAc > 1:389887/1‑143 (MQ=21) ggCGGATGCGAGAAAGTTTTATGCCGGAGAGAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc < 2:546993/143‑1 (MQ=11) tGAGAGAAGTTGTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCCGATGAAACAGAATTTGCCTGGCTGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATgg < 2:391437/143‑1 (MQ=255) gagagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGCACTCACACGTGAAACGCCGTAGCGCCGATGGt > 2:447729/1‑143 (MQ=12) agaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTACCACCTGACCCCATGCCGAACTCAGAACGGAACAGCGGTAGCGCCGATGGtggc > 2:80122/1‑140 (MQ=11) ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGTATCGTTGTTTGTGTggggaaggccc > 1:565076/1‑136 (MQ=11) aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGc > 2:212905/1‑143 (MQ=32) aCAGATTAGATCAGAAGGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGGGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCAGTAGCGCCGATGGGAGTGCGGGGTCTCACCAGGCgc > 2:537246/1‑142 (MQ=11) aCAGATTAAATCAGAACGCACAAGCGGTCTGAAGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGCGGGGTCTCCCCATGCga > 2:407936/1‑143 (MQ=12) cgATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCgaga < 1:335218/142‑1 (MQ=17) gagtAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTGGCCTGGCGGCCGTAGCGCGGTGGTGGCTCCGTACCCCATGCCGAACGCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGagag < 1:572865/140‑1 (MQ=11) tAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAg < 1:595831/143‑1 (MQ=32) tCAGAACGCAGAGGCTGTCTGCTGAAACGCAACTTGCCGCGCGGCCGGAGCGCGGTGGTCGCACCGGGCCCCATGCCGAACTCAGAAGTGAAACTCCTTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGaa < 2:427074/143‑1 (MQ=11) tCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGaa > 2:739879/1‑143 (MQ=32) gacggggAAGCGGGCTGATGAAACAGGGTGTGCCGGGCGGGCGGAGCGCGGTGGTCCCGCCGGGCGCCATGCAGGACTCCGAAGTGAAGCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGc < 2:11253/137‑1 (MQ=11) cGCAGAAGCGGTCTGAGGAAACAGAATTTGCGTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCa < 1:125715/143‑1 (MQ=17) gCAAAAGCGGTCCGATGAAACAGAATGTGGCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAg < 1:274443/143‑1 (MQ=255) gAATCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCAATGCGAGGGGAGGGAAGTGccggccg > 2:641782/1‑138 (MQ=11) aggCGGTCTGATGAAACAGAATTTGCCGGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCAt < 2:295698/141‑1 (MQ=17) cGGTCGGAGGAACCAGAACTTCCCTGCCGGCCGTAGCGCTGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCaa < 2:323267/143‑1 (MQ=11) tgatgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTaa < 1:631221/143‑1 (MQ=32) atgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGc > 1:303029/1‑143 (MQ=32) | TAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGC > NC_000913/3946551‑3946828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |