New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3961341	75 (1.370)	4 (0.080)	4/270	6.3	5.3%	coding (666/2022 nt)	rep	DNA helicase and single‑stranded DNA‑dependent ATPase
	?	NC_000913	= 3961349	73 (1.400)					coding (674/2022 nt)	rep	DNA helicase and single‑stranded DNA‑dependent ATPase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGAAAGCCTGTAACGTTCTCGACTTCGATGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGAAGAAGTCCGCAAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3961197‑3961341 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcTCATACTGGCTGGTGTTGGTGTCCTGATACTCATCCACCAGCAGATAGCGAATTTTGTTCTGCCAGCGCTTGCGGACTTCTTCATTGCGTTGCAGCAGCAACGTCGGCAATAAAATCAGATCATCGAAGTCGAGAACGT  <  NC_000913/3961349‑3961211                                                                                                                                                                                                                                                                                              cgtggAAGCCTGTTACGTTCTCTGCTTCGAGGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGCAGACGTCCGCAAGCGCTGGCAGAGCAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCA                                                                                                                                               <  1:540097/138‑1  CTGAAAGCCTGTAACGTTCTCGACTTCGATGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGAAGAAGTCCGCAAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAG                                                                                                                                              >  2:747520/1‑143   TGAAAGCCTGTAACGTTCTCGACTTCGATGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGAAGAAGTCCGCAAGCGCTGGCAGAACAAAATTCGCGATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGC                                                                                                                                             <  2:434376/143‑1                   TCTCGACTTCGATGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGAAGAAGTCCGCAAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGCTCATACTGGCTGGTGT                                                                                                                             <  2:762158/143‑1                      CGACTGCGATGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGAAGAAGTCCGCAAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGCTCATACTGGCTGGTGTTGG                                                                                                                          <  1:888555/143‑1                                                                                   AAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGCTCATACTGGCTGGTGTTGGTGTCCTGATACTCA                                                                                                            <  1:624537/96‑1                                                                                   AAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGCTCATACTGGCTGGTGTTGGTGTCCTGATACTCA                                                                                                            >  2:624537/1‑96                                                                                                                                            ACCAGCTCATACTGGCTGGTGTTGGTGTCCTGATACTCATCCACCAGCAGATAGCGAATTTTGTTCTGCCAGCGCTTGCGGACTTCTTCATTGCGTTGCAGCAGCAACGTCGTCAATAATCTCTGATCATCGAAGTCGAGAAC    <  1:886976/143‑1                                                                                                                                            ACCAGCTCATACTGGCTGGTGTTGGTGTCCTGATACTCATCCACCAGCAGATAGCGAATTTTGTTCTGCCAGCGCTTGCGGACTTCTTCATTGCGTTGCAGCAGCAACGTCGGCCATCAAGTCAGATCATCGAAGTCGAGAcc    >  2:508086/1‑141                                                                                                                                              CAGCTCATACTGGCTGGTGTTGGTGTCCTGATACTCATCCACCAGCAGATAGCGAATTTTGTTCTGCCAGCGCTTGCGGACTTCTTCATTGCGTTGCAGCAGCAACGTCGGCAATAAAATCAGATCATCGAAGTCGAGAACGT  >  1:609651/1‑143                                                                                                                                                                                                                                                                                              CCTGAAAGCCTGTAACGTTCTCGACTTCGATGATCTGATTTTATTGCCGACGTTGCTGCTGCAACGCAATGAAGAAGTCCGCAAGCGCTGGCAGAACAAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3961197‑3961341 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcTCATACTGGCTGGTGTTGGTGTCCTGATACTCATCCACCAGCAGATAGCGAATTTTGTTCTGCCAGCGCTTGCGGACTTCTTCATTGCGTTGCAGCAGCAACGTCGGCAATAAAATCAGATCATCGAAGTCGAGAACGT  <  NC_000913/3961349‑3961211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.