Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979268 1979278 11–776 64 [0] [0] 63 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)61 (1.180) 52/268 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAT  >  NC_000913/1978360‑1978639
                                                                                                                                              |                                                                                                                                         
tGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                                                           <  2:93821‑M1/143‑1 (MQ=255)
 gggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCCCTACACGCACATACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTCCTTAACATAAATGt                                                                                                                                          >  2:378961‑M1/1‑142 (MQ=255)
  ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                         >  2:191673‑M1/1‑141 (MQ=255)
     cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTAACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                      >  2:341581‑M1/1‑138 (MQ=255)
      tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGCTGGAAGCGATTATCAATAATGCGCGACGCAGAGCACACAAAGCACTCAATTACTTAACATAAATGtataat                                                                                                                                     >  1:287661‑M1/1‑137 (MQ=255)
           acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                <  2:742073‑M1/143‑12 (MQ=255)
           acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                >  2:607648‑M1/1‑132 (MQ=255)
           acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATAAAACGGAGGGGGGCTGCGATTTTCAGTAATGCGTGCTGCAGATCACACAAAACACTCAATTACTTAACATAAATCtataagtcatg                                                                                                                                >  2:522958‑M1/1‑132 (MQ=255)
           acTTATCTAAGACTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGCGGGGTCGCCATTGTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                <  2:134875‑M1/143‑12 (MQ=255)
                tCTAAGATTTTTCCTAAATCGACGCAATGTTACTCGTCGCAACACTCAGATACAACGGAGGGGGGCTGCGTTGTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                           <  2:437062‑M1/143‑17 (MQ=255)
                 cTAAGACTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                          <  1:263414‑M1/143‑18 (MQ=255)
                  tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCGCACAACCCTCAATTTCTTAAGCTTTATTtataagtcctactttcgt                                                                                                                         >  2:198187‑M1/1‑125 (MQ=255)
                  tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                         >  2:882047‑M1/1‑125 (MQ=255)
                   aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGGGCACACAAAACACTCAATTCCGTAACATAAATGtttaagtgagaacgttgtt                                                                                                                        >  2:277582‑M1/1‑124 (MQ=255)
                       tttttCCTACATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACCCAACACCCACACACTTAACATATCTGtataagtcatacttttgttttgg                                                                                                                    <  2:957045‑M1/143‑24 (MQ=255)
                       ttgttcctAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAAGGCGTGATGCAGTTTTGTTAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                    <  1:203329‑M1/140‑24 (MQ=255)
                       ttgtacgtaaagcgaCGCAACTGTACTCGTCACTACACGCCCATACAACGGAGGGGCGCTTCTATTCTCAATACTGCGTGATGCAGATCACACAAAACACTCAATTACGTAACATAAATGtataagtcatacttttgttttgg                                                                                                                    <  1:827873‑M1/136‑24 (MQ=255)
                         tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAGACTCAATTATTTAACATAAATGtatgagtcatacttttgttatgggt                                                                                                                  >  2:902918‑M1/1‑118 (MQ=255)
                               aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                            <  1:234901‑M1/143‑32 (MQ=255)
                                 aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca                                                                                                          >  2:826461‑M1/1‑110 (MQ=255)
                                     aCGCAGCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                      <  1:948439‑M1/143‑38 (MQ=255)
                                     aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtacaagccatacttttgtttcgggtgtattccactct                                                                                                      >  1:611656‑M1/1‑106 (MQ=255)
                                       gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                    <  2:796354‑M1/143‑40 (MQ=255)
                                         aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacgtcatacttttggtttgggtgtgtgtcaatatgtta                                                                                                  >  2:873204‑M1/1‑102 (MQ=255)
                                             gTACTCGTCACTACACGCCCATCCAACGGAGTGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                              <  1:752933‑M1/143‑46 (MQ=255)
                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtctcgggtgtatttcaatctgttcagaagttt                                                                                          >  2:864474‑M1/1‑94 (MQ=255)
                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                          <  2:91312‑M1/143‑50 (MQ=255)
                                                    tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                       <  2:160508‑M1/143‑53 (MQ=255)
                                                      aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                     >  2:852041‑M1/1‑89 (MQ=255)
                                                           acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                >  2:17161‑M1/1‑84 (MQ=255)
                                                              cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttattcgctacgctag                                                                             >  1:851122‑M1/1‑81 (MQ=255)
                                                               acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                            >  1:943594‑M1/1‑80 (MQ=255)
                                                                 aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                          <  1:544325‑M1/143‑66 (MQ=255)
                                                                 aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                          >  2:357095‑M1/1‑78 (MQ=255)
                                                                        ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgatctgggtgacttttaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                   >  1:877581‑M1/1‑71 (MQ=255)
                                                                              ggtctgcGATTTTCAATAATGCGGGATGCAGACCACACAAAACACTCTATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                             <  1:535547‑M1/140‑79 (MQ=255)
                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACAGAAAACATTCAATTACTTAACAGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                         <  1:67064‑M1/143‑83 (MQ=255)
                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                         >  2:670002‑M1/1‑61 (MQ=255)
                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                         >  2:669960‑M1/1‑61 (MQ=255)
                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                         >  2:664654‑M1/1‑61 (MQ=255)
                                                                                           cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                >  1:374809‑M1/1‑52 (MQ=255)
                                                                                            aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                               >  2:382855‑M1/1‑51 (MQ=255)
                                                                                              caatgCTTGATGCACATCACACAAAACACGCAATTACTTAACATAAATGtataagtcatacttttgttttgggtctatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                             <  2:255637‑M1/142‑95 (MQ=255)
                                                                                                 tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                          <  2:955939‑M1/143‑98 (MQ=255)
                                                                                                       aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                    >  2:429009‑M1/1‑40 (MQ=255)
                                                                                                        tGCAGATCACACAAAACACTCAATTACTGAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatattgcg                                   >  1:836089‑M1/1‑39 (MQ=255)
                                                                                                          cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttcgttttggatgtatttcaatctgttaaaaagtttttcgctacgctagcaatcaaaaatgaaacagcaataatcgacatcggatgtctcgca                                 >  1:817267‑M1/1‑37 (MQ=255)
                                                                                                            gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                               <  2:496178‑M1/143‑109 (MQ=255)
                                                                                                            gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                               >  2:248438‑M1/1‑35 (MQ=255)
                                                                                                             aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                              <  2:103280‑M1/143‑110 (MQ=255)
                                                                                                               cacacaAAACGCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttgcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                            <  1:629574‑M1/143‑112 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                         >  1:689355‑M1/1‑29 (MQ=255)
                                                                                                                  acaAAACACTCAATTACTTAACATAAATGtataagtcatactttcgatttgggtgtatttccatctgttaaacagtttttagctacgctagcaatcaaaaatgaaacaggaatcatagaaatggcaagctacgaacagacaaa                         >  1:175368‑M1/1‑29 (MQ=255)
                                                                                                                    aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtagcgtgctgtcaaaat                       >  2:846476‑M1/1‑27 (MQ=255)
                                                                                                                    aaaaCACGCAATTAGTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgagacaggaataatcgaaatgggatgttgcgcacagtcaaaat                       <  1:188435‑M1/143‑117 (MQ=255)
                                                                                                                       acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac                    <  2:75063‑M1/143‑120 (MQ=255)
                                                                                                                          cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                 <  2:562736‑M1/143‑123 (MQ=255)
                                                                                                                            cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttacacaaaacgagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc               <  1:882047‑M1/143‑125 (MQ=255)
                                                                                                                                tACTTAACATAAAAAtaaaggtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa           <  2:252715‑M1/143‑129 (MQ=255)
                                                                                                                                  cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctaacaagcaaaaatgaaaccgggtttttcaaaattgtatgttgcgcacagtcaaaataactcaccgtaaat         >  2:436808‑M1/1‑13 (MQ=255)
                                                                                                                                   ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata        >  1:164321‑M1/1‑12 (MQ=255)
                                                                                                                                      aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc     <  2:605163‑M1/143‑135 (MQ=255)
                                                                                                                                        aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaagatgaaacaggaataatggaagtgggatgttgcgcacagtcaaaataactcaccgtagataatcat   >  2:744371‑M1/1‑7 (MQ=255)
                                                                                                                                         caaatGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc  <  2:300441‑M1/142‑138 (MQ=255)
                                                                                                                                              |                                                                                                                                         
TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAT  >  NC_000913/1978360‑1978639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.