New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171606	33 (0.600)	8 (0.150)	7/272	4.9	20.2%	intergenic (+63/‑30)	rrlB/rrfB	23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
	?	NC_000913	= 4213021	NA (NA)					intergenic (+76/‑18)	rrlE/rrfE	23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

ACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAT  >  NC_000913/4171465‑4171709                                                                                                                                               |                                                                                                        ccgacttttgtAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCTGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGaa                                                                                                        <  2:941787/133‑1 (MQ=0)                 gggTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGACCGcttctgcgttctga                                                                                        <  1:566566/143‑14 (MQ=1)                 gggTGTGGACGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGGGAGGCGTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGACCGcttctgcgttctga                                                                                        <  1:730008/143‑14 (MQ=1)                      cctacgctcAGCGAGGCGTCTCGCGAACCGGTACTAATGAACCGTGAGGCTGAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATaaaa                                                                                   <  2:939149/135‑1 (MQ=1)                                              tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgc                                                           >  2:780426/1‑143 (MQ=32)                                              tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACCCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCCGTCTGATAAAACAGGATTTGCCTGGCCGCAGGAgc                                                           >  1:580516/1‑143 (MQ=11)                                               aaCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGCAGCTGATTTGGCGGATGAGAGAAGATTTTCAGC‑CTGAGACAGATTAGAGTAGGACGCAGAGGCGGGCGGATAAAACGGAATTTGCCTGGCGGCAgccggg                                                          >  1:156029/1‑138 (MQ=11)                                                 ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAG‑TAGGGTTTAAAGCTCTTAGGGTGATTAAATCAAAACACAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGcgcg                                                        <  2:951973/143‑1 (MQ=11)                                                    ggaCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAGAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg                                                     <  1:815320/141‑1 (MQ=17)                                                        tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc                                                 >  2:13670/1‑143 (MQ=32)                                                          aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGGGGTCCCa                                               >  1:597557/1‑143 (MQ=17)                                                           agcaCCGTGAGGCTCAACCTGACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc                                              <  2:477707/140‑1 (MQ=12)                                                             aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                            <  2:718641/143‑1 (MQ=32)                                                             aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                            >  2:525236/1‑143 (MQ=32)                                                                  tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                                       >  1:508114/1‑143 (MQ=32)                                                                  tGAGGCGTCACCTTACAACGCCGCAGCTGTTTTGGCGGATGAGAGAAGGGTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                                       <  1:490202/143‑1 (MQ=11)                                                                        ttAGCCGTACAAGGCCGAAGCTGTTGTGGCGGTGGAAAGAAGATTTTCATC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGcc                                 <  1:330293/143‑1 (MQ=11)                                                                        ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAGCTGACCCCCTggc                                 >  1:117546/1‑141 (MQ=12)                                                                        ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGcc                                 >  1:687242/1‑143 (MQ=32)                                                                             cTTACAACGCCGAAGCTGTTTTGGCGGATGCGAGAAGATTTTCAGC‑CTGCTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAGGCCgcgcg                            >  1:782484/1‑139 (MQ=255)                                                                                aCAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg                         <  2:676254/143‑1 (MQ=17)                                                                                  gaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAGATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  1:901239/142‑1 (MQ=17)                                                                                  aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  2:294002/143‑1 (MQ=32)                                                                                  aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  2:3400/143‑1 (MQ=32)                                                                                  aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       >  1:24071/1‑143 (MQ=32)                                                                                  aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  2:833508/143‑1 (MQ=32)                                                                                  aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGACTGTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  2:739630/143‑1 (MQ=17)                                                                                        gAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                 <  2:934243/143‑1 (MQ=32)                                                                                        ctaGCTGTTTTGTCGGAGCAGAGATGCTTCTCTGC‑GTGATACAGACTAAATCAGAACGGAGGAGCGGTCTAATAAAAAAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                 <  1:350392/141‑1 (MQ=11)                                                                                         aaGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc                >  1:844845/1‑143 (MQ=32)                                                                                               ttttGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa          <  2:527039/143‑1 (MQ=32)                                                                                                  tGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcg       <  1:146323/143‑1 (MQ=17)                                                                                                   ggCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc      <  1:244757/143‑1 (MQ=32)                                                                                                      ggATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTATCGCCGa   >  1:174163/1‑143 (MQ=17)                                                                                                       gATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAt  <  2:859876/143‑1 (MQ=31)                                                                                                                                               |                                                                                                        ACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAT  >  NC_000913/4171465‑4171709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.