New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2349899 =45 (0.820)4 (0.080) 4/264 6.2 8.6% intergenic (+8/+34) yfaH/glpQ pseudogene/periplasmic glycerophosphodiester phosphodiesterase
?NC_000913 2349925 = 43 (0.840)intergenic (+34/+8) yfaH/glpQ pseudogene/periplasmic glycerophosphodiester phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGAC  >  NC_000913/2349784‑2350062
                                                                                                                                             |                                                                                                                                         
ttCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGCCAGGATGACGCACGAACGCCATCCTGCa                                                                                                                                          >  1:709374/1‑143 (MQ=255)
tgcTATCAACAGATTTGGTTGCGGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCa                                                                                                                                          <  1:5456/141‑1 (MQ=255)
    ctCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGCGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTac                                                                                                                                      <  1:436146/142‑2 (MQ=255)
            aTTTCGTTGGTGGGTGAAGGAAGGGCGGTAGAGGGCGGTCCGCTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGTTGTCACATCAACGCCATCCTGCAGTAACATTActc                                                                                                                              <  1:527528/143‑1 (MQ=255)
              ttCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCtt                                                                                                                            <  2:220356/143‑1 (MQ=255)
                  ttGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTttatt                                                                                                                        <  2:772221/143‑1 (MQ=255)
                  ttGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAAGTAGTGGCGATTGGAACAATTTGATATGAGACAGGATGGCGCATGAGCGCCGTCCTGCAGTAACATTACTCTttatt                                                                                                                        >  1:185185/1‑143 (MQ=255)
                             aaaaacGCCGTTAGCAGGTCGGCCGCTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa                                                                                                             <  1:949283/141‑1 (MQ=255)
                             aGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa                                                                                                             >  2:459053/1‑143 (MQ=255)
                                        tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCa                                                                                                  >  1:401240/1‑143 (MQ=255)
                                        tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCa                                                                                                  >  1:509287/1‑143 (MQ=255)
                                          gAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAgg                                                                                                >  1:847932/1‑143 (MQ=255)
                                             ggCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaa                                                                                             <  1:953082/143‑1 (MQ=255)
                                                aGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCAGGAACGCCCTCCTGCAGTAACATAACTCTGTATTAAGAACTTTTACCGCACTATCAgacaaagc                                                                                          >  1:1451/1‑136 (MQ=255)
                                                 gTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCa                                                                                         <  2:836493/143‑1 (MQ=255)
                                                  tCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTCGCAGGGAAGTCAg                                                                                        >  2:865281/1‑143 (MQ=255)
                                                        gatacacctccAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACa                                                                                  <  2:125519/133‑1 (MQ=255)
                                                        gTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACa                                                                                  >  2:164640/1‑143 (MQ=255)
                                                           tttACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGcc                                                                               <  2:15589/143‑1 (MQ=255)
                                                            tcactacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGccc                                                                              <  2:151124/141‑1 (MQ=255)
                                                                tacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCAttt                                                                          >  2:68470/1‑143 (MQ=255)
                                                                    aacgcgcctGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTacac                                                                      <  2:349557/135‑1 (MQ=255)
                                                                           agcgAACAATTAGGGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTAGTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCttt                                                               <  2:185185/140‑1 (MQ=255)
                                                                           aTGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCttt                                                               <  1:164640/143‑1 (MQ=255)
                                                                           aTGGAACAATTAGTGGCGACTGGAACAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTCCTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAGTCAGTAAACAGACCACTTACACCCCCttg                                                               >  1:343119/1‑142 (MQ=255)
                                                                             ggAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGt                                                             <  1:133312/143‑1 (MQ=255)
                                                                                   aTTAGTGGCGATTGGGAAAATTTGATATGAGACAGGATTGCGTCTGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACa                                                       <  1:880158/143‑1 (MQ=255)
                                                                                       gTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGc                                                   >  1:12332/1‑143 (MQ=255)
                                                                                          gCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGcatc                                                >  1:910016/1‑143 (MQ=255)
                                                                                           cGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGcatca                                               >  1:77566/1‑143 (MQ=255)
                                                                                            gATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACt                                                                                                           <  1:565507/82‑1 (MQ=255)
                                                                                            gATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACt                                                                                                           >  2:565507/1‑82 (MQ=255)
                                                                                                 gAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAAc                                         <  1:556406/143‑1 (MQ=255)
                                                                                                    gaaTTTGATATGAGACAGGATGGAGGATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGa                                      <  1:530849/142‑1 (MQ=255)
                                                                                                    aaaTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGa                                      <  2:935157/143‑1 (MQ=255)
                                                                                                     aagctGACATGAGGCAGGAGGGCGCATGAAAGCCATCCTGAAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACATCCGCTTTGTTATACAGAGCATCATATAACTGAt                                     <  2:368024/139‑1 (MQ=255)
                                                                                                      aTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGAtt                                    <  2:572261/143‑1 (MQ=255)
                                                                                                                agaCAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATGTAACTGATTCACATCAGGa                          >  2:688721/1‑143 (MQ=255)
                                                                                                                  aCAGGATGCCGCATGAACGCCATCCTGCCGTCACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAACCAGCCCATGTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAgt                        <  2:653075/143‑1 (MQ=255)
                                                                                                                    aGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGCgtgt                      >  1:811248/1‑143 (MQ=255)
                                                                                                                     ggATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATAACGAGAGTa                     >  1:565581/1‑143 (MQ=255)
                                                                                                                         ggCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCa                 <  1:2472/143‑1 (MQ=255)
                                                                                                                               tGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGt           <  2:932453/143‑1 (MQ=255)
                                                                                                                                        tCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGAc  <  2:887745/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                         
TTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGAC  >  NC_000913/2349784‑2350062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.