New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2771953 =	55 (0.500)	6 (0.050)	6/438	NT	9.9%	intergenic (+340/+47)	yfjT/yfjU	CP4‑57 prophage, putative periplasmic protein/CP4‑57 prophage, conserved protein,Phage or Prophage Related
	?	NC_000913	= 2997688	NA (NA)					intergenic (‑90/+2)	insC1/ygeQ	IS2 repressor TnpA/pseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant

ATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCC  >  NC_000913/2771715‑2772184                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        gccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtcta                                                                                                                                                                                                                                         <  2:1158838‑M1/1‑1 (MQ=255) gccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtcta                                                                                                                                                                                                                                         >  2:112043‑M1/239‑239 (MQ=255)  tGAGCGCAGTGGTCAGTTGTTTTCAGATATAGTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACACCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAggcaggca                                                                                                                                                                                                                                         <  2:421635/238‑1 (MQ=255)   gAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATATTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATc                                                                                                                                                                                                                                       <  1:952924/239‑1 (MQ=255)                 tctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccgggtcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctATCAGGTGACATTGCt                                                                                                                                                                                                                          >  2:1074101‑M1/223‑238 (MQ=255)                      tttCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGAGCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGa                                                                                                                                                                                                                    <  1:1014155/239‑1 (MQ=255)                          aGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATAAGGTGgatttgcccctatattt                                                                                                                                                                                                                 >  2:1038083‑M1/1‑221 (MQ=255)                                                           gCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAAt                                                                                                                                                                               <  2:865936/239‑1 (MQ=255)                                                             tgtgAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                                                                                                              <  1:332268‑M1/238‑53 (MQ=255)                                                               tgAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGACACTGAAGATATCTGAACTAAGt                                                                                                                                                                           >  1:1184424/1‑239 (MQ=255)                                                                    ttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctATCAGGTGACATTGCTCCCTGTTGCAATAGATGATTTTGTCACTGAAGATATCTGAAATAagtttga                                                                                                                                                                       <  2:641646‑M1/67‑3 (MQ=255)                                                                           gtgtTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGGATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTtca                                                                                                                                                               >  2:855865/1‑239 (MQ=255)                                                                               tAAAACTCCTGATCACTTTTTTGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCAc                                                                                                                                                           <  2:664293/239‑1 (MQ=255)                                                                                     tCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcg                                                                                                                                                     <  1:1038083‑M1/239‑78 (MQ=255)                                                                                      ccTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAACATTAAAAAGATATAAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCCGTTCATCACGGGTCgg                                                                                                                                                    >  2:325665/1‑239 (MQ=255)                                                                                                 tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCga                                                                                                                                         >  2:238181‑M1/143‑239 (MQ=255)                                                                                                 tttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTtcatca                                                                                                                                                            >  2:772810/1‑220 (MQ=255)                                                                                                 tttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTtcatca                                                                                                                                                            <  1:772810/220‑1 (MQ=255)                                                                                                 tttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCga                                                                                                                                         >  1:887423/1‑239 (MQ=255)                                                                                                                ggTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTg                                                                                                                          >  2:29785/1‑239 (MQ=255)                                                                                                                                      ttGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATg                                                                                                    >  1:755185/1‑239 (MQ=255)                                                                                                                                                  tGAGCCTGACTAACTTAACAAGTAAAATTAAAAAGATATGAATGAATACGGTGGATAACAACATGGTCAAGCACAATCAAGGACAAGGAAGGCATCAGGTGACATTGCTCCCTGATGGAAGCGATGATATTGTAACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATATCCAg                                                                                        <  2:1005879/239‑1 (MQ=255)                                                                                                                                                  tGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCa                                                                                         >  1:1014255/1‑238 (MQ=255)                                                                                                                                                        ggACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGtt                                                                                  >  1:992992/1‑239 (MQ=255)                                                                                                                                                         gACTAACTTTATCATTAAAATTAAAAAGATATGAATGAATACTGCGGGTATCAACATGGCCAATCACATTCAAAGACAAGACAGGCATCAGGTGACATTGCCCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGACATCAGTTTAATCAGTTCATCACGCGTCGGTGGCATATGGAGATAATTAATTCTTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGAGCGtt                                                                                  >  2:106858/1‑238 (MQ=255)                                                                                                                                                         caCTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATTTCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAACTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCCTTGCCGTTGTTATGAAGCATCTCCACCGTGtt                                                                                  >  2:694395/2‑238 (MQ=255)                                                                                                                                                          aCTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGCCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGtt                                                                                  >  2:195315/1‑237 (MQ=255)                                                                                                                                                           tccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTATTTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCg                                                                               <  2:1077368‑M1/155‑1 (MQ=255)                                                                                                                                                                    tCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCg                                                                                                                       >  2:43092/1‑190 (MQ=255)                                                                                                                                                                    tCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCg                                                                                                                       <  1:43092/190‑1 (MQ=255)                                                                                                                                                                                      tataAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                    <  1:325665/239‑1 (MQ=255)                                                                                                                                                                                      tatGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                    <  1:1151184/239‑1 (MQ=255)                                                                                                                                                                                       atgaatgaATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                    >  2:393562/1‑238 (MQ=255)                                                                                                                                                                                       atgaatgaATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                    <  1:393562/238‑1 (MQ=255)                                                                                                                                                                                              aatACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTaa                                            >  1:1168747/1‑239 (MQ=255)                                                                                                                                                                                               atACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                    >  1:246359/1‑230 (MQ=255)                                                                                                                                                                                               atACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                    <  2:246359/230‑1 (MQ=255)                                                                                                                                                                                               atACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAAt                                           >  1:74851/1‑239 (MQ=255)                                                                                                                                                                                                tACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                          >  1:833474/1‑239 (MQ=255)                                                                                                                                                                                                    gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCg                                                                                                                                                     >  1:384816/1‑128 (MQ=255)                                                                                                                                                                                                    gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCg                                                                                                                                                     <  2:384816/128‑1 (MQ=255)                                                                                                                                                                                                    gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGt                                                                                                                 >  2:1077243/1‑164 (MQ=255)                                                                                                                                                                                                    gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGt                                                                                                                 <  1:1077243/164‑1 (MQ=255)                                                                                                                                                                                                    aaggATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGtt                                        <  1:616938/235‑1 (MQ=255)                                                                                                                                                                                                     cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCg                                                                               >  2:82341/1‑197 (MQ=255)                                                                                                                                                                                                     cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCg                                                                               <  1:82341/197‑1 (MQ=255)                                                                                                                                                                                                     cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                          <  1:11666/234‑1 (MQ=255)                                                                                                                                                                                                     cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                          >  2:11666/1‑234 (MQ=255)                                                                                                                                                                                                          atCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTTAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCata                                 >  1:1172718/1‑238 (MQ=255)                                                                                                                                                                                                          atCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCatat                                <  1:29785/239‑1 (MQ=255)                                                                                                                                                                                                               cATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCa                                                                                                                                                                                                <  2:54007/74‑1 (MQ=255)                                                                                                                                                                                                               cATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCa                                                                                                                                                                                                >  1:54007/1‑74 (MQ=255)                                                                                                                                                                                                               cATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTa                           >  1:1141322/1‑239 (MQ=255)                                                                                                                                                                                                                  ggCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGGGGTGCCCCAGGCCGGGTTGTGATAGCTGGTAATGTTGCTCATATCAgctgta                        >  2:616938/1‑234 (MQ=255)                                                                                                                                                                                                                  ggCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCt                        >  1:726859/1‑239 (MQ=255)                                                                                                                                                                                                                       tctggagattcagggggccagtctATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGATATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGa                                                  <  2:709895‑M1/184‑1 (MQ=255)                                                                                                                                                                                                                       tctggagattcagggggccagtctATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGa                                                  >  1:709895‑M1/25‑208 (MQ=255)                                                                                                                                                                                                                       aTCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                          <  1:805471/216‑1 (MQ=255)                                                                                                                                                                                                                       aTCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                          >  2:805471/1‑216 (MQ=255)                                                                                                                                                                                                                       aTCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGAAGCACTCGATGAGTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGTTGACAGAGGCCGGGGTGTGATGAATGGTAAGGTTGCTCATATCATTATCTATTTa                   >  1:589176/1‑239 (MQ=255)                                                                                                                                                                                                                         cacaTTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACa                 <  2:74851/239‑1 (MQ=255)                                                                                                                                                                                                                             ttCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGt             >  2:780905/1‑239 (MQ=255)                                                                                                                                                                                                                             ttCAAGGACAAGGCAGGCATCAGGTGACAGTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTACTTATTGTCGGTTCGTTGCCGGTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGGTCCGTCGGCCGGGGTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTCCaacgg             >  2:684836/1‑236 (MQ=255)                                                                                                                                                                                                                              tCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGTTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTg            >  2:1068272/1‑239 (MQ=255)                                                                                                                                                                                                                                     aaaGGCAGGAATCAGGTTACATTGCTCCCTGATGCTCTCGATGATTTTGTCACTGAAGATCTCTGAAATAAGTTTAAGCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTTGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCAGAGGCCGGGTTGTGATAGATGGTATTGTTGCTCATATCAGTATCTATTTACAAAGAGACagaga     <  2:755185/238‑1 (MQ=255)                                                                                                                                                                                                                                        ggcaggcaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAgcc  >  1:669772/1‑239 (MQ=255)                                                                                                                                                                                                                                        ggcaggcaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAgcc  >  1:1095494/1‑239 (MQ=255)                                                                                                                                                                                                                                        ggcaggcaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAgcc  >  1:669801/1‑239 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        ATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCC  >  NC_000913/2771715‑2772184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.