| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,151,320 | T→G | 20.7% | H593P (CAT→CCT) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,151,320 | 0 | T | G | 20.7% | 87.0 / 2.0 | 48 | H593P (CAT→CCT) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base T (26/8); new base G (3/8); total (32/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.52e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAGCCGCGGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGT > NC_000913/4151085‑4151554 | gtaGCCGCGGTAGACAGCGCAGGAGATGACTGACAGTTCCAGCATAATGCGTCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCGCCGGTATAAAGCGACAGGCTGCTGACGGGGATTTCTGGCAGACCGTATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGACGCCTTTCAGG‑C‑TTCCTGGGGGTTGTGACAGCAGCG‑‑CCGCATGAg < 2:957535/239‑1 (MQ=255) taGCCGCGGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGGCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAACAGCG‑‑CCGCATGGGc > 1:1107575/1‑239 (MQ=255) aGCCGCGGTAGACATCGCAGGTGATGACTGACAGTTCATCCATAATGCTACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGc < 2:592664/238‑1 (MQ=255) tCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCcgcg < 1:725684/239‑1 (MQ=255) gactgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCCGCG‑‑CCCCAGGAGCAGGTGCGCCCCCGCGACCAAAGGac > 2:1130025/1‑237 (MQ=255) gactgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCCTGAGCAGGTGCGCCGCCGCGACCCATGGaa > 1:421465/1‑238 (MQ=255) tCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGCTTTGACAGCACCG‑‑CCGCCGGAGCCGTTGTGCCCCCGCGACCCATGCAACCGCCGCGACCGTGGGATAACggccagtccacaccccca > 2:149569/1‑222 (MQ=255) tCGGCTCCGGCGGGGGCAGCAGGTTGGCTTCCAGACTCGCCCCCGTATAAAGCGACAGGCGGCTGACGGTGATTTCTGGCAGACCCTATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTAAGG‑C‑TTCCTGGCGGTTGTTAGCGCACCG‑‑CCCCACGTGCCGGTGCGCCCCCCCGACCCATGGACACGCCCGGCGCGTGGGACGACGtgcccccccaaaccc > 2:607826/1‑223 (MQ=255) cgggggGGGCAGCAGGTTGGCTGCCAGAACCGCCGCGGTAAAAAGCGACAGGTTGCTGGCGGTGATTTCTGCCAACCAATTTTAAAAGGGGTCCATCTCGCCTTGTC‑CGTTCGCGCGCGGGCCTCCTGTCGGG‑C‑TCCTGGGCGGTGGTGACGGCGGCG‑‑CCGCAGGAGCAGGGGCCCCGCCGCGCCAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGc < 2:193737/239‑1 (MQ=255) ggcccGGTATAAAGCGACAGGCTGCTGACCGGGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCAGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGATAGAAGCC‑‑CCGCCCGAGCACGCGTGCCGCCGCGACCAATGGAACCGGCGCGACCCTCGAACAACCTCAGCTCACACCCCCCGTTTTCCCAGGTTTTCGTTAATGCACACGGTGACTGaca > 2:796990/3‑237 (MQ=255) cccggtagaagggcgcgggagggtgAGGGTGATTTGTCGTAAACCATATGAAAAGCGGTTAGCCCCGCCCTGTT‑GGTGTGGGCGCGGGCCG‑CTTTCGGG‑CGTTCGGGGCGGTGGGGAGAGCGGCG‑‑CCGCCGGGGCGGGGGCGCCGCCGCGACCAGTGGATCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATAtt < 2:118501/216‑1 (MQ=255) aGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGCGCGCCCCCGCGACCAATGGAACCGCCGCGAACGGGGGACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCCACCTGAGCCTGATATTGCGCCCCGGa > 1:324288/1‑239 (MQ=255) aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCCATGGAACCGCCGCGACCGCGGCACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGaa > 1:535407/1‑236 (MQ=255) aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGGGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCCCGGCCGTGGAACAACGTCAGCGCAATACCCGCTTTTTCGCCGGGTTTGCTTAATGCATCCTGGGCCCGGTACTGCGCCCAAGaa > 2:1119901/1‑236 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCCTGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCCGTGCCTGATATTGCGCCCCGGAAGCt > 1:319136/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCt > 1:1057695/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGCTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCCCGACCCTGGAACAACGTCAGCCCAATACCCGCTTTTTCGCCGGGTTTGGTTAATGACACCTGTGCCTGATATTTCGCCCAGGAAGCt > 2:485535/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCCGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGGTGTGACAGCAGCG‑‑GCCCAAGACCAGGTGAGCCCCCCCGACCAATGGAACCGCCGCGACCGCGGCACAACCCGAGCCCACCACCCCCTTTTTCGCCGGTTTTGTTTCGTGCATCCTGCGCCTGACATTCCGCCCCGGCAGCt > 2:569385/1‑238 (MQ=255) gTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCg > 1:1051492/1‑238 (MQ=255) aGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCCCGACCCATTGAACCGCCGCGACCGTGGGACAACGTCAGCTCCATACCCGCTTTTTCGCAGGCTTTGCTTAATGCATCCTGTGCCTGATCTTGCGCCCCGGACGCTC‑CCATCACCCCCCCCTCTTTTGCTTCTTCGGAACAgtcc > 2:1156121/1‑236 (MQ=255) gCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTTGCGGGTGTGATAGCAGCG‑‑CCGCATGGGCAGGTGCGCCCCCGCGGCCCATTGGACCGCCGCGAACGCGGAACCACGTCAGCTCCATACCCGGCTTTTTGCAGGGTTTGATTAATTAATCCTGTGCCTGCTATTGCGCCCAGGACGATGCCCTTCAC‑CCCCCATCTTTTTCTGCGTCGGACTAGCCaa > 2:829247/1‑239 (MQ=255) gCGGATCATCTCGCCCTGTT‑CGGTTA‑GCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCCGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGGAGCTG‑CCCTCACTCCCCCCTCTTTTGCTGAGTCGGACTTGCCaa > 2:169911/1‑238 (MQ=255) atcatcTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGAt > 1:703679/1‑158 (MQ=255) ccccgccgccTGTTCCGGCTACGCGCGGGCCCCTGGTCGGG‑T‑CTCCGGGCGTTTGAGACCGCACCG‑‑CGGCATGGGCGGGTGCGCCGCCGCAACCAATGGAGCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatcat < 2:319136/230‑1 (MQ=255) gTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCCGGTGCGCCGCCCCGACCAATGGAACCGCCGCGACCCTGGAACAACGCCAGCTCAATACCCGCTGTTTCGCAGGTGTTGATTAATGGATCCTGTGCCTCAAATTTCCCCCAGGAAGCTT‑GCATCACTCCCGCATCTTTTGCTTCGTCTGAATCACCAATCAACACCATCTCttt > 2:1167422/1‑238 (MQ=255) tt‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCCGGTGCGCCGCCGCGACCAATGGAACCCCCGCGCCCCTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCACCCTGTGCCTGATATTGCGCCCAGGGAGCTG‑CCATCACTCCCCCATCTTTTTCTGCGTCGGGATAGCCAATCATCCCCCTCCGtttt > 2:7353/1‑237 (MQ=255) gcgcgcggCCGCCTTTCTGGTC‑TCCCGGGCGTTAGTGAAGGCAGCG‑‑CCGCATGAGCGGGTGCGCCCCCGCCACCAGTGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAAt < 1:941807/233‑1 (MQ=255) cgcgCAGGCCGCCTGTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGCGCAGGTGCGCCGCCCCGACCAATGGAACCGCCGCGGCCGTGGAACAACGTCCGCTCAATACCCGCGTTTTCCCAGGTTTTGATTAATGCATCCTGTGCCCGAGATTGCGCCCAAGAAACTG‑CCCTCACTCCCCACTCTTTGTCTTCCTCCGGATAGCCAAATATCTCCAACCGCTTGCCCtcactc > 2:1104649/1‑234 (MQ=255) cgcAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTTTGAAAGAAGCG‑‑CCGCCTGAGCAGGTGCGCCGCCTCGACCAATGGGACCGCCGCGCCCGTGGAACAAAGTCAGCTCAATACCCGCTTTTTCGCAGGCTTTGATTAATGCAGCCTGTGCCTGAAATTGCGCCCACGAAGCTG‑CCATTTCTCCCGCATCTTTTGCTGGGGAGGAATAGCCAATCATCACCATCTCTTTGCCCTGACTcg > 2:348729/1‑237 (MQ=255) cgcAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTTCTGAGTCGGCATAGCCAATCATCACCATCTGTTTGCCCTGAATCAg > 1:783427/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAg > 1:960460/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCCGGACCAATGGAAAAGCCGCGACCGTGGAAAAACGTCCGCTCAATACCCGCTTTTTAGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTTCGCCCCGGAAGCTG‑CCATCACTCCCGCATCTCTTGCTTGGCAGGGATAGCCAATCATCACCACCTGTTTGCCCTTCATCAg > 2:265052/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAACG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAg > 1:101615/1‑239 (MQ=255) cAGGCCGCC‑TTCGCG‑C‑TTCCCAGCGGTT‑TGGCACCCGCGCCCCGCGTGAGAAGGGCCCCCCCCGCAACCAGTGGAGCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc < 1:1155217/239‑1 (MQ=255) gccgccTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCCGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCCATACCCGCTTTTTCGCAGGTTTTGATTAATGCAACCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCCTTTTCTGAGGCGGGATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCAc > 2:454965/1‑239 (MQ=255) ccTTTCGGG‑C‑TTCCTGGGGGTTGTGACAGCAGCG‑‑CCGCAGGAGGAGGTGCGCCGCCGCCACAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:1075312/239‑1 (MQ=255) ccTTTCAGC‑C‑TCCCTGGCGTTGGTGACAGCAGCG‑‑CCGCGGGACGAGGTCCCCCCCCGACACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:1119901/239‑1 (MQ=255) ccTTCCAGG‑T‑TTCCGGGCGGTTGTGCAAGCGGCG‑‑CCGAATGCGCAGGGGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:862490/239‑1 (MQ=255) cAGG‑C‑TTCGTGGCGGTTGTGACCGCGGCG‑‑CCGCAGGAGCAGGTGCGCCGCCGCCACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 1:1096927/239‑1 (MQ=255) cagcttgcgtGGCGGTTGGGACAGCAGCC‑‑CCGGAGGAGGAGGTGCCCCGCCCCACCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 1:380792/230‑1 (MQ=255) tCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAatat > 1:447767/1‑239 (MQ=255) tCCTGGCGGTTGGGACAGCAGCC‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCCCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCCGATATTGCGCCCAGGAAGCTG‑CCATCCATCCCGCCTCTTTTGCTGCGTCGGCATAGCCCATCATCACCATCTGTTTGCCCTGAATCCGGCCACGATACCAGTCAaaat > 2:821099/1‑239 (MQ=255) gtggTTGTGACAGCGGCG‑‑CGCCAGGAGCAGGCGCGCCGCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGag < 1:130362/236‑1 (MQ=255) gggtttGTGACCGCGGCC‑‑CCGCTTGGGCAGGGGCGCCGCCGCGACCATGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGag < 1:665682/234‑1 (MQ=255) cagcG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCCTCTTTTGCTGAGTCGGAATAGCCAATCATCACCCTCTGTTTGCCCTGAATCAGGCCCCGATACCAGTCAATATTGAGCAGCTGGGTCATg > 2:695683/1‑238 (MQ=255) cg‑‑ccgcAGGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGTTTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCAATCCCGCATCTTTTGCTGACTCGGAATAGCCAATCATCACCATCCTTTTGCCCTGAGTCAGGCCACGAAACCCGTCAATATTGAGAAGCTGGGTCATcaca > 2:766419/1‑238 (MQ=255) cccgcAGGAGCAGGTCCGCCCCCACCCCAGTTGTATCCGCCGCGACCGTGGAACAACGTCCGCGCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCCTCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGAc < 2:462281/235‑1 (MQ=255) cgcATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGt > 1:503218/1‑239 (MQ=255) | GTAGCCGCGGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTACGCGCAGGCCGCCTTTCAGG‑C‑TTCCTGGCGGTTGTGACAGCAGCG‑‑CCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTG‑CCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGT > NC_000913/4151085‑4151554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |