| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 989,945 | A→G | 20.8% | S138P (TCA→CCA) | pncB ← | nicotinate phosphoribosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 989,945 | 0 | A | G | 20.8% | 82.4 / 2.5 | 50 | S138P (TCA→CCA) | pncB | nicotinate phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (15/21); new base G (3/8); total (20/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCA > NC_000913/989711‑990175 | ccgtCGGCGCGAGGGAAAGCCGACGCGCCAGTTCGTAGTTGCTTGTGCCCCGAAACCAGGATTCCTGTTGCGGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAACGCGGCGACGGGTGCCAATATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGagcga < 2:1051987/236‑1 (MQ=255)ccacgggCGGGAGGGAAAGCCGACGCGCCAGAACGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTGGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGGCGACTAATTTGCGGTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGagcga < 2:336952/234‑1 (MQ=255)ccATCGGCGTGACGGGAAGCCGGCGCGCCAGAGCGCAGTTGCTGGTGCTCACAAACCAGGATTCCTGTCGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGagcga < 2:168200/239‑1 (MQ=255) ggCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGGCGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑CCCCGGAAGACGGCTAATTTGCCTTTCCGCGGGGTGGGGGGTTG‑CGCCACGTCGGCCCCCGGGGagcgataacg > 1:438034/1‑239 (MQ=255) ggCGTGAAGGAAAGCCGACTCGCCAGAACGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGagcgatagcg < 1:616190/239‑1 (MQ=255) ggCGGGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCCAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTTAA‑GACAGCAAGGCGCCGAACTTGTTTTTCATAGCGTGGAGGGGTTG‑CGCCACGGCGCGCGGCGGTGggcgctgacg > 2:1176973/1‑233 (MQ=255) cGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGagcgatagcg‑a < 1:976188/238‑1 (MQ=255) gggAGGGAAAGACGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATg < 1:673649/237‑1 (MQ=255) gAGGGAAAGCCGACGCGACAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAAGCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGtt < 1:496940/239‑2 (MQ=255) aGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGAGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTa < 1:75419/238‑1 (MQ=255) cGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTACAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCAc < 2:831923/238‑1 (MQ=255) agagCGTAGTTGCGGGTGCCCACAAACCAGGATTCCTGTGGCGAGCGCTTAACATTGGTTTCTTGTACTTC‑GGGAGAAAAACGGGGACGGGTGCCAAAATCC‑ATAAGAGGGAAGCGCGACATATAAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGTTTG‑CGAAACGTCGGCCGGCGGGGAGCGATAGCG‑ATGTC‑CCA‑TTTCACTGATAACCg < 2:95167/238‑1 (MQ=255) ggTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAA‑ACCGAGAAGGCGACTAATTTGCTTTCCAGCGGGTCGGGGGGTTG‑CGTGACGGCGGCCCGCCGTGGTCGGTAGGG‑GCGCA‑CCA‑TTTTCATGATAAACGCCAGCACGGCAACtt > 2:509553/1‑239 (MQ=255) aCCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGagcgat < 1:1129982/186‑1 (MQ=255) gATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAA‑CCCCAGAAAACGACTAATTTGCTTTTCAGCGCGGCCGGGGCTTG‑CGCAACGTCGGCCCGCGGTAAGCTGTAGCG‑GTGTACCCA‑TTCCAC‑GATGACCTCCTCCAACAGGACTCACCAGAGGAGGACtt > 2:406889/1‑238 (MQ=255) cTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGGCGAGGGCTTG‑CGCAACGTCGGCCCGCGGTGAGCGATAGCG‑ATGGA‑CCA‑TTTCACTGATAACCCCCAGCAAAGGAACTTCCCAGAGGGAGACTTCACGc > 1:934156/1‑238 (MQ=255) gTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGCCTAATTTTCTTTTCAGCGTGTCGGGGGGTTG‑CGCAAAGTCGGCCTGGGGGGGGCGATAGCG‑GTGTA‑CCA‑TTTCACTGATAACCGCCACCAAAGGAACTTCCCAAGGGATGACTTCCCGcccc > 1:90289/1‑237 (MQ=255) gCAGACGCTAAACGATGGTTTCTGGTACTGC‑GCGAGAAAACCGGGGACGGGGGCAAAAATCC‑ATCAGAGGGAGGCGCGACATATCAGGACGGGGGGTAAAC‑GCGGAGAGGTCGTCTAATTTGCTTTCCGGCGTGTCGAGGGCTTG‑CCAACCGCCGGCCGGAGGGGGGAGATAGCG‑AGGTA‑CAT‑TTTCACGGAGAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACggg < 2:438034/239‑1 (MQ=255) aGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCTGTGagcgata < 1:207612/170‑1 (MQ=255) aGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAA‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCTGTGagcgata > 2:207612/1‑170 (MQ=255) ttAAGGTTGGTTTCTGGTACTAG‑GCGAAAAAAAGGGGGA‑GGGTGGCAAAAACCAATCAGAGGGAGGGGCTAAATAACAAGACGGGGGGTGACC‑CCGTAGAAGTCGACTATGTTGATTTCCGGGGGGCGGGGGGTTGG‑CGCAACGTCGGCCTGCGGTGGAGGTTAGCG‑TGGTA‑CCA‑TTTCACTAATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTa < 2:341389/238‑1 (MQ=255) taaaggATGGTTTCTTG‑ACATCGGCGAGAAAAACGGGGCGGGGTGCAAAAATCC‑AACAGGTGGAAGAGCGAAATATCAAGACCGGGGGTTAAC‑GCGGAAAAGGCGACTAATTTGTTTCCCAGCGTGTGGAGGGTTTG‑CGAAACGCCGGCCGGCGGTGGGCGATAGCG‑AGGTA‑CCA‑TTTCCCGAAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTa < 2:383272/233‑1 (MQ=255) ggTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGGCGACTCAATTTCTTTCCAGAGGGGCGGGGGGCTG‑CGCAAAGCCGGCCTGCGGGGAGCGGAAGCG‑AGGTA‑ACA‑ATTTTCTCATAAACCCCAGCAAAGGGACTTCCCACAGGAGGGATTTACTCCACGGGCCCCTTTAAAGaaaa > 2:981972/1‑236 (MQ=255) tttCTTGTCCTCC‑GGAAAAAAACCGGCGCGGGGGGCAAAAACCC‑ATCAGATGGAAGCGGGAAATACAACGACCGGCGTTTACC‑GCCGAGAAGCCGACTAATTTGCTTCCCAGGGTGTCGAGGGTTTG‑CGAACCGCCGGCCTGCGGTGGGCGTTAGCG‑ATTTA‑CCA‑TTTCCCGGAAACCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATc < 2:1059599/238‑1 (MQ=255) tgttgcacggc‑gcgAAAAAACCGGCGAGGGGTGCAAAAACCC‑ATAAGATGGAAGCGCGACATACCAAGACGGGGGTTTAAC‑GCCGAGAAGGCGACTAATTTGCTTCCCGGCGTGTCGGGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACGGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAg < 2:1030287/229‑1 (MQ=255) aCTTC‑GCGAGAAAAACGGCGACGGGTCCCAAAACCC‑ATCAGATGGAAGCGCGACATATCAAGCCCGGCGTTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTGG‑CGAAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGc < 1:838957/238‑1 (MQ=255) c‑gcgAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGGCGACTAATTTGCTTTTCAGCGGGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGAGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGATTGCCATTa > 1:858265/1‑239 (MQ=255) c‑gcgAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCCAGAAAGGGGATAAATTGCTTTCCAGAGGGTCGGGGGGTTGCCCCAACG‑CGGCCCGCCGGGGGGCATAGCG‑GTGGA‑CCATTTTCCCTATCAACCCCCCGAAAAGAACCTTCCC‑GGGGATTGATTCCCGCCCCCGGCCCCCTAAACGAATATCCaccctggccttt > 2:129666/1‑228 (MQ=255) c‑gcgAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGCTAAC‑GCCCAGAAGTCGACTAATTTGCTTTCCAGCGCGTCGGGGGCTTG‑CGCAAAGTCCGCCTGCCGTGAGCGATAGCG‑GTTGA‑CCA‑TTTCACTGATAACCGCCCGCAAAGGAACTTCCCCGAGGATGACTTCACACCCCCGGCCCCCTTAACGAATATCCCACCTTCCATTa > 2:176576/1‑239 (MQ=255) c‑gcgAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGATAAC‑GCCGGCAAGGCGACGAATTTGATTTCCACCGCGGCGGGGGGTCG‑CGGAAAGCCGGCCTGCGGTGTGGGGTAGAG‑GGGTA‑GCC‑TTTCACCGATAACCCCCCCGCAGGGAAAGTACCAAAGGGTGACTTTACGCCACCGACCGGCTAAACGAaaataactacaggcaatg > 2:589659/1‑225 (MQ=255) cgAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAA‑CCCGCGAAGACGACTACTTTGGTTTTCAGCGGGTCGGGGGCTTG‑CGCAACATCGGCCCTCGGGGAGCGATAGCG‑AAGGA‑CCA‑TTTTACTGCTAACCACCAGCCAAAGAACATCCCCCAGGAGGAATTCACGCCCACGGCAGCATAAAcaacgaatcatgtctcccacacg > 2:1191393/1‑217 (MQ=255) gataaagagcgcggcgGGTCCACAAATCC‑ATGCTATGGAAGGTCGACATAGCAAGCCCGGTGGTTAAC‑GCAGGAAAGCCGTCTTCTTCTCTTTCCAGGGTGTGGGGGTTGTG‑GCCACCGTCGGGTCGGGGGGGCCGATAACT‑ATGTC‑CCA‑TTACACGGATATCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTGGCCATTATCg < 2:742607/229‑1 (MQ=255) ggggcGGGTGAAAAAACCC‑ATAATAGGGAAGCGCGACATACAAAGCCTGGCGGTTAGC‑GCCGAGAGTCCGATTAGTGTGCTTTCCGGCGTGCCGAGGGGTGG‑CGCAACTCCGGCCGGGGGGGAGCGAT‑GCGAATGTC‑CCT‑TTTCACTGAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACg < 2:779208/234‑1 (MQ=255) ggAAGCGCGACATATCAAGACCGGCGGATAAA‑GCCGCGAAATCGAATAATTTTCTTTCCAGCGTGTCGGGGGCCTG‑CGCAACGGCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTTACTTATAACCGGCAGCAAAGGGACTTTCCAGAGGAAGACTTCAAGCCACGGCCCGACTAAACGAATATCCAACTTGCCCATATAGTTGGACCCTGTGGCTTTTTCCGGGTTAAAGCggc > 2:897926/1‑236 (MQ=255) aGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGGCGACTAATTTGCTTTCCAGCGGGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAAACGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAAAATCCAGCTTGCCCTTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTc > 1:1072813/1‑238 (MQ=255) aGCGCGACATATCAAGACCGGCGGTTAAA‑GCCCGGAAGTCGGCTAATTTTCTTTCCCGCGTGTCGAGGGCTTT‑CGCCACGTCGGCCTGCGGGGTGCGCTAGCG‑GTGTA‑CCA‑TTTCCCTGATAACCGCCCGCAAAGGAACTTCCCCGAGGAGGACTTTACCCCACCGGCCGCCTTAACGAAAACTCCGCCTGCCCTTATCTTTGTGCACGGGGACTTGTTCCAGGGTAAAGCgggaacc > 2:943205/1‑233 (MQ=255) ccATATAAGGAGCGGTGGTAAAC‑GCGGAAAATGCGCTTAATGTGCTTCCCGGGGTTTGGGGGCCTGG‑CGCAGCGTCGGCCGGCGGTGGGCAATGGCG‑ATGTA‑CCA‑TTTCCCGGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 2:1087425/237‑1 (MQ=255) caaagaacaagccGGGGGGTAACGGCCGAGATGCCGAATAATTTGCTTTCGAGGGGTTCGAGGTCTTC‑GGCAACGTCGGCCGGGGGTGAGCATTAGGT‑GTGTA‑CCT‑TTCCCCGGATAGCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 2:576046/228‑1 (MQ=255) aCATATAAATCCCGGCGGTTACG‑GCCGAGAAGTCGACTAATTTGCTTTCCGGGGTGTCGGGGGCTTG‑CGCAACGGCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 1:34652/238‑1 (MQ=255) tatCAAGCCGGGCGGTTACC‑GCCGAGAAGTCGCTTAATTTGTTTTCCGGCGTGTCGAGGGTTTG‑CAAAACGTCGGCCTGCGGTGAGCAATAGCA‑AGGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAg < 2:1072813/239‑1 (MQ=255) gcggTAAAC‑GCCGAGAAGTCGACTAATTTGCGTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGTTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 1:347951/238‑1 (MQ=255) agtgtgatagtttGATGTCCAGGGTTTCGAGGGTTTG‑CGCAACGCCGGCCGGCGTGGAGCAAAAACA‑ATGTA‑CCA‑TTTCCCTAAAAGCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAggc < 2:1060354/229‑1 (MQ=255) tGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAg > 1:490804/1‑238 (MQ=255) ggCTTTCCCGCTTGTCGAGGGCTTG‑CCGACCAGCGGCGTGGGCAGCGAGATAGAG‑ATGTC‑CCA‑TTTCTATGAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGc < 1:329344/238‑1 (MQ=255) ttcccggCGTGTGGTGGGCTTG‑CCCAACGTCGCCCGCGGGTGAGCGATAGCA‑AGTTA‑CAT‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCa < 1:689224/232‑1 (MQ=255) ttccaagggtgcCGAGGTTTTG‑CACAACGTCGGCCTGCGGTGGGCGATACCA‑TTTCA‑CCA‑TTGCACTTATAGCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCAc < 1:1031769/231‑1 (MQ=255) ttccacgtggtCGAGGGTTTG‑CACAACGTCGGCCTGGGGTGAGCGATAGCA‑ATTAT‑CCA‑TTACACTTAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACt < 1:553835/230‑1 (MQ=255) ttCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGcc > 1:898767/1‑236 (MQ=255) cggcggttCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGat < 1:934470/232‑1 (MQ=255) gtCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAACG‑ATGTA‑CCA‑TTTCACTGCTAACCGCCAGCAAAGGCACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGCATATCCAGCATGCCATTATCGTTGGACACGGTGACTTGTTACGGGTTAAAGCGGAACTCGAGTAACCAGTTAAGATAGTCGGCCTTACAGACAGGCAGGGCGGAAAGGCACTGAACTtcat > 2:666170/1‑239 (MQ=255) cTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGc > 1:1067453/1‑239 (MQ=255) ttG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCa > 2:353335/1‑239 (MQ=255) g‑cgcAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAg > 1:904207/1‑238 (MQ=255) cGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGCAAGCCACTGATATTCATCATCCTGTAGGCGCAgg > 1:1061032/1‑239 (MQ=255) cggCGGTGAGCGATTGCT‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:1079509/237‑1 (MQ=255) cTGGGGTGGGCGCTAGCG‑ATGTA‑CCT‑TTTCACTGCTACCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 2:257671/239‑1 (MQ=255) cTGGGGTGAGGGATAGCG‑ATGTC‑CAA‑TTTCGCGAATAACCGCTAGCAAAGGAACTTCCAAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:323069/239‑1 (MQ=255) cTGCGGTGAGCATTAGCA‑ATATC‑CCA‑TTTCACTTATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:174618/239‑1 (MQ=255) cTGCGGTGAACGATAGCG‑ATGTA‑CCA‑TTTCACTGATAGCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 2:858265/239‑1 (MQ=255) ggCGGTGAGAGAGAGCG‑AGGTC‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:589659/237‑1 (MQ=255) | CCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTC‑GCGAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAC‑GCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTG‑CGCAACGTCGGCCTGCGGTGAGCGATAGCG‑ATGTA‑CCA‑TTTCACTGATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCA > NC_000913/989711‑990175 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |