| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,395,464 | G→C | 13.8% | A144G (GCT→GGT) | nuoJ ← | NADH:ubiquinone oxidoreductase, membrane subunit J |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,395,464 | 0 | G | C | 13.8% | 169.5 / 3.8 | 61 | A144G (GCT→GGT) | nuoJ | NADH:ubiquinone oxidoreductase, membrane subunit J |
| Reads supporting (aligned to +/- strand): ref base G (43/9); new base C (2/7); total (45/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.87e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
CATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAA > NC_000913/2395230‑2395696 | cATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAg > 1:156669/1‑239 (MQ=255) tGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGT‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGt > 1:1208372/1‑238 (MQ=255) gATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGtt > 1:136870/1‑238 (MQ=255) aTCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACg > 1:173743/1‑239 (MQ=255) aTCAACATAAACAGCAGATTGCGACGGATAACCAGACCGCTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGACCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCCCCCGCACGCTCTTCACGACCGACGTGGACGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAACCCAGTTCCA‑CCGCCAGTACg > 2:631049/1‑239 (MQ=255) aCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGa > 1:1010194/1‑239 (MQ=255) aagaagagcggcgcGGATAACCACACGTGTAACGCCAAGAGCGAAAAAGCGTCCCGCGATGATCATCCCATGT‑TGTGAGGGGATCG‑CGCGGGCCCCCCCGTTTTCCTTTGCGGGCTCGCGTTTTTACGATTGCTCACCCCTTCCCCCCCGCGCTCTTCAGGCCAGGCGTGAAAGC‑CCACACCCAGACGGGCGAGCAGCAGCATAAAAGCAAGTTCCA‑CCGCCAGTACGTAAGGCCCGaa < 2:250813/226‑1 (MQ=255) gcagATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACa > 1:782016/1‑239 (MQ=255) gaagtgtGCGAGTGAAAACCGCACCGTGTAAGCCAGGAAAGAATAAGATCGCCGCTATGATC‑GCACCTGTGTGTCGGGGCATCG‑TGCGTGCCCCCCCTTTTTGCTTTCCGCGCTGCCTTCTTTACGATTGCTCACCACTCCCCCCGCCAGCTCTCCACGACCGCCGTGGAGGC‑CCACACCCAGTCCTGCGAGCAGCAGCAGAAAACCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGaa < 2:667136/231‑1 (MQ=255) gaagtggCGACGGATAACCAGACGGATTAAGCAAAGAAGGAATAAGGTGCCCGCGGGGTTCAGTCAAGGT‑TGTAAGGGGTTCA‑TCCGGGCTCCCCCGTTTTTCTTTCCCCGCGTCCGTCTTTAGATTTGCCCAGCCCTCCCCCCGCACGCTTTTCACGACCGCCGTGGAAGC‑CCACACCCAGCCCTGCGAGCAGCAGCAGAGATGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACa < 2:702751/232‑1 (MQ=255) cagATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGACGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACa > 1:41678/1‑238 (MQ=255) agATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGc > 1:1017171/1‑239 (MQ=255) aTTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGt > 1:2698/1‑239 (MQ=255) aTTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGt > 1:1128939/1‑239 (MQ=255) atacccgtcccGGTTAACCAAAGACCGATTAAGTTTCCCGCGATGATCATTCCTTTT‑TGTAAGGGGATCA‑TCCCTCCTCCCCCTTTTTTTTTTCCCCGCGTTCGTCTTTCCGATTGCACAGCACTCCCCCCCCCCGCTCTCCACGACCGCCG‑GGAAGGCCCACACCCAGCCCGGCGAGCAGCAGCATAAAACCCGGTCCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCAc < 2:1172974/229‑1 (MQ=255) aTACCCAGACGGGTGAAGCCAAGAACGAATAAGATCGCGGCGATGTTCAGTCCGTGT‑TGTAAGGGGATCA‑TGCGTCCCCCTCCTTTTTTCTTTCCGCGCTGTCGTTTTTACGATTGCCAACCACTCCCCCCGCACCCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCAc < 2:173743/238‑1 (MQ=255) aTAACCAGGCGTGTTAAGCAAAGAACAAATAAGTTCCCCGCGGGCATGTGTCCGTTT‑GGTAAGGGGATCC‑GGCTCGCCCCCCCTTTTTTCTTCTCGGGCTGCCGTCTTCACGATTGCCCAGCACTTCCCCCGCACCCTCTACACGCCCGAGGTGGACGG‑CCACAACCAGCCCGGCGAGCCGCAGCATAAAACCCAGTCCCG‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCAc < 2:1208372/238‑1 (MQ=255) aCCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGc > 1:660119/1‑239 (MQ=255) ccGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGc > 1:150935/1‑238 (MQ=255) ccGGTGAAGACAAGGACAAAGAATACTGCCGGGGTGATTAGTCCATTG‑TGTGCGGGTACCG‑TGCGTCCTCCTCTCTTTTTCTTTTCGCTCTGTCTTCTTTACGATTGCCCAGCACTTCGCCCGCCCGCTCTTCCCGCCCGACGTCAAAGA‑CCACAACCAGCCCTGCGGGCAGCAGCATAAAAGCCAGTTCCG‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCa < 2:859170/239‑1 (MQ=255) aaaagAATAAGTGTCCCGCGGGGCTCAGTCGATTT‑TGTGAGGGGACCA‑GGCGTGCCCCCCTGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCACAGCCCCCCCCCCGCACGCTCTTCACGACGGACGGGAAAGG‑CAACACCCAGACCGGCGGGAAGCAGCAAAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTAc < 2:136870/235‑1 (MQ=255) aTAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGaa > 1:930788/1‑195 (MQ=255) tGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTg > 1:904913/1‑239 (MQ=255) ccGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGa > 1:308735/1‑238 (MQ=255) ccGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGa > 1:258300/1‑238 (MQ=255) aGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCa > 1:1021825/1‑206 (MQ=255) cctgt‑tttTAGGGGGTCAGTGCGTCCCCCTCCTTTTTTCTTTCCGCGCTGCCGTTTTACCGTTTACCCACCACTACCCCCGCCCGCTCCACCCGACGGACGGGGAGGG‑CCACAACCAGCCCGGCGAGCACCAGCATAAAACCCAGTCCCT‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAgg < 2:1017171/237‑1 (MQ=255) gt‑tgtAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATg > 1:980218/1‑238 (MQ=255) gt‑tgtAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAACCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTCACTGGCGTACCGTCGATACCCTGATCCTTAACACCGACGATg > 2:868722/1‑238 (MQ=255) accA‑TGCGTGCTCCTCCTTTTTTCTTTTCGCGCTGTCGTCTTTACGTTTGCTCAGCACTACCCCCGCACGCTCTACACGACCGACGTGGAAGG‑CCAAACCCAGCCCGGCGAGAAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAAt < 1:100189/236‑1 (MQ=255) aTCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCa > 1:408568/1‑182 (MQ=255) aTCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCAAACAGCGTAATACACACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATAGTTAACACCGAGGATGGCGTAAACAATc > 1:55143/1‑239 (MQ=255) cA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATca > 1:406283/1‑238 (MQ=255) gTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCAccacca > 1:59753/1‑239 (MQ=255) ctcctcCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCa > 1:318426/1‑239 (MQ=255) ctcctcCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCa > 1:1130953/1‑239 (MQ=255) cttttcGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTgg > 1:622941/1‑167 (MQ=255) ttcGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAAt > 2:994059/1‑239 (MQ=255) cgccgtccttcttaccGATTGCCCAGCACCTCCCCCGCCCCCCCTCCACGACCGCCGTGAAAGC‑CCACAACCAGCCCGGGGAGAACCAGAAAAGAACCCA‑TTCCACCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGc < 2:406283/224‑1 (MQ=255) aCGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGACTGGCGTAAACAATCACCACAAGCATGATGGCCGACAAAATTGCCGCACCAATCcac > 1:1004757/1‑238 (MQ=255) gATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCcaaa > 1:262866/1‑235 (MQ=255) tGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGGAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTACCGGACCAATCCACACCTg > 2:1104484/1‑238 (MQ=255) cTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTACTACCCACTGCTTTAGCACTGATTGGCGTACCGTCGCTACCCCGCTCGTTAACACCGAGGATGGTGTAAACAATCACCACCAGCATGATGGCCGAAAAACTTGCCGGACCAATCCAAACCTCCgg > 2:380718/1‑239 (MQ=255) cccctcccccccgccGCTCTACCCGCCCGGGGGGGAAGG‑CCACAACCAGCCCTGCGAGAAGCAGCAAAAAAGCCGTTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTc < 1:934658/225‑1 (MQ=255) ccGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGACCAGCGTAATACCCACTGCTTTAGCACTGATTGGCGCACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGCTGGCCGACAAAATTGCCGGACCAATCCCCACCTGCGGTCTCAGcacccg > 2:1203077/1‑233 (MQ=255) tctTCACGACCGACGTGGAAGG‑CCCCAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGtt > 1:173067/1‑235 (MQ=255) ttCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGt > 2:77068/1‑238 (MQ=255) ttCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGGACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCCATCCACACCTGCGGTTTCAGCCACTGACGTTCCTGt > 2:409255/1‑238 (MQ=255) ccacacgcggcGTGGAGGG‑CCACAACCAGCCCGGCGACCCACAGCATGGAACCCATTGCCA‑CCGCCAGTCAGGAAGGCCCGAACAGCGTAATTCCCACTGCTTTAGCACGGATTGGCGTCCCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAGTCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTc < 2:104982/229‑1 (MQ=255) cgacGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGAtt > 1:1100084/1‑236 (MQ=255) cggTGAAAGG‑CCCCAACCAGCCCTGCGACCGGCAGCATAGACGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGa < 1:1064587/237‑1 (MQ=255) acGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTACTACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCAACACCTGCGGTTTCAGCCACTGTCGGTCCTGTTCGATTTCTGa > 1:859403/1‑239 (MQ=255) acGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGCCGTTCCTGTTCGATTTCTGa > 2:656296/1‑239 (MQ=255) cacaACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGt > 1:128640/1‑239 (MQ=255) caACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATAGTTAACACCCAGGATGCCGTAAACTATCCCCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCCGCGGTTTCAGCCACTGGCCTTCCTGTTCGCTTTCTCAACCGCCCAGGTTg > 2:997903/1‑239 (MQ=255) gCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCAtcatca > 1:833254/1‑238 (MQ=255) gCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCAtcatca > 1:229544/1‑238 (MQ=255) gAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGCTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATcacc > 2:828805/1‑238 (MQ=255) aggtgcaTAGAACCCATAGCAA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACcacga < 1:58747/234‑1 (MQ=255) agcagcaTAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACcacga > 2:686434/1‑238 (MQ=255) aTAAAAGCCAGTCCCG‑CCGGCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACcacgaacacgaa < 1:985454/239‑1 (MQ=255) | CATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGT‑TGTAAGGGGATCA‑TGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGG‑CCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCA‑CCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCATCATCACCACGAACACGAA > NC_000913/2395230‑2395696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |