Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,206,512 | G→T | 12.8% | V18F (GTC→TTC) | ttdA → | L‑tartrate dehydratase, alpha subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,206,512 | 0 | G | T | 12.8% | 129.3 / 2.5 | 74 | V18F (GTC→TTC) | ttdA | L‑tartrate dehydratase, alpha subunit |
Reads supporting (aligned to +/- strand): ref base G (18/43); new base T (8/2); total (29/45) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.67e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01 |
ATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCATA > NC_000913/3206276‑3206748 | aTAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGGA‑ATTTTTCACACAAAAAC‑AAAAAAT‑T‑GA‑GTTGCCA‑TGATGAGAG‑GAAATAAAAAAAAAAAAGAAATGAATAAGTTTAAAAAAATTGTc > 2:757226/1‑239 (MQ=255) aTAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTTATACAAAAAA‑AAAAAAT‑G‑AC‑GTTGTCC‑TTAGCAGGGCAAAGT‑ATAAAAAAAAAGCAATGAAAAAGTGTACAGAGATTg > 2:13286/1‑237 (MQ=255) aGCTCAGTTTATTTTGAAAAACATTGCCATTCCCTGCTCTGTCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAT‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑AAAAAACCACAATTTTAGTGGTATTTTGTGGCGG‑TAAA‑TTTTTCAAAACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt < 2:609553/239‑1 (MQ=255) aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt < 1:13286/239‑1 (MQ=255) tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTTGAT‑TTTTTCCAG‑CAAAAACAAAAAATT‑G‑AA‑ATTTCCA‑‑GATTGGGG‑GAAGTAATAAAGAACAAGCAAGGAAAAAATTGACAAAGAATTTTGCTAACattt > 1:1045251/1‑238 (MQ=255) tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTTGAA‑TTTTT‑AAAAAAAAAAC‑AAAAAAT‑GTGA‑TTTGCCAGAGATGAGAG‑‑AGGTAA‑AATACATAAGAAGATAATAAGCTGTCAGAGATTCTTGCTAACttt > 2:1124421/1‑238 (MQ=255) tcccAAAACTTCGCTATTCCCGGCTTTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATTTCCGCGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTATTTTGGGGGGG‑TGAA‑TTTTCCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCACCAGGCAGTGAAAAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCa < 1:909580/236‑1 (MQ=255) acAAAACATTGCCATTCCCTGCTCTGGCGAAATATTAATTCTTATTTTCTCTTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑AAAAAACCACATTTTTAGTGGTAGTTTGGGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACG‑G‑GA‑TTTGCCA‑TGATGAGCG‑AAAGTAATAACCAACAGGCAGTGAATAAGTTGAAAGAGATTGTCGCTACTTTTAC‑CGCCATg < 1:391680/238‑1 (MQ=255) aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCACACAAAAAA‑TAAAAAT‑T‑GA‑GTTTTGC‑TTATTAGCG‑TAAATAATAAAAAATACGAAGAGAATAAATTAGAACAGAGTGTCGCTCACCTTAT‑ACCCATGAt > 1:854016/1‑239 (MQ=255) aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAATTTTTTCAAGACAAA‑AC‑AAAAAAT‑A‑CA‑GTTGCCA‑TCATGGGCG‑GAAGGAATAAGACACAAGCAGTGACAAAGTTGACAAAGATTATTGATAACTTTtc‑ctcccttcttt > 2:915883/1‑232 (MQ=255) tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCAGACAAATAC‑AAAAAAT‑G‑TA‑GGTGCCA‑TGATTAGCG‑AAAGTAATAAAAAACAGGGAGGGAATAAGTTTACAGAGAGTGTGGCTAAATTTAC‑CCCCATGATTTCT‑Ac > 1:1101461/1‑238 (MQ=255) taTTCCCTTGTTTGCCGAAATATTCATTCTTATTTTCGCTTTGATTCACGAAA‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑AAAAAACCAAATTTTTAGTGGTAGTTTGGGGCGG‑TGAA‑TTTTCCCAAACAAATAA‑AAAAACT‑G‑GA‑GTCGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGa < 1:847011/238‑1 (MQ=255) aTTCCCTTCTCGGGCGAAATATTCATTCTTATTTTCGCTTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑AAAAAACCACATTTTTAGTGGTAGTTTGTGGGGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGaa < 1:829109/239‑1 (MQ=255) cctgctgtgacgtatttgtcagtcTTATTTACACGTGGATTCACAAAC‑TTTTAATTTGATATTGACGGTGGAAAAAAAA‑ATAAAACCCCATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTCCAAGCAAAAACC‑AAAAACT‑G‑GT‑TTGGCCA‑GGTTAAGCA‑AAACTAAAAGGCAAAAGGCCGTGAAAAAGTTAAAATTGATGTTCGGTACCTTTTC‑CGCCATGATTTCT‑ACCCGAATGcc < 2:768641/221‑1 (MQ=255) aaaaagcaaaTATTCATTCTAATTTCGGCGTTAATTC‑CAAACTTGTTAATTACAATTTGAGGGTGGAAAAAAAT‑AAAAAACAAAATTTTAAGTGGTAGTTGGTGGGGG‑TGAA‑TTTTTCAAAAAAAAAAA‑AAAAACG‑G‑GA‑GTGGCCA‑TGAGGAGCG‑AAAGTAATAAGCAACAGGTAGTGAATAAGTTGACGGAGATTGTCGTTACCTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCtgatg < 2:339379/231‑1 (MQ=255) tataCATTCTTATTTTCGCGTTAATTCACGACC‑TGTTAATTACATATTCACGGTGGAAAAAAAT‑ATAAAACCCCATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTACCAGAAAAATAC‑AAAAACT‑G‑GA‑GTTGCAA‑TGAGGAGCG‑AAAGTAATAAGCAACAGGCAGTGAAAAAGTTGACAGAGATTGTCGCTAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGa < 1:166732/239‑1 (MQ=255) aattcactcTTATTTTCGGTTTGATACACAAAG‑TGTTAATTACATATGCACGGTGGAAAAAAAT‑AAAAAACAAAATTTTGAGGGGTAGTTTGTGGGGT‑AGAA‑TTTTTCCAGAAAAAAAA‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCA‑AAAGTAATAAGCAACGGGCAATAAATAAGTTGACAGATATTGTCGCTAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGa < 2:125645/238‑1 (MQ=255) tcTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑ATTTTTCCGACAAAAAC‑AAAAACA‑A‑GA‑GATGGCC‑TGATGAGCG‑GAAATAAAAAGAAAAAAGCAGTGAAAAAGATGACACAGAATTTAGCACAATTTAT‑CCCCCTGATTTCT‑ACCCGAATGTCtcatggagggggggatttgtt > 1:339379/1‑222 (MQ=255) cTTATTTTCGTGTTTATTCACGAAC‑TGTAAATTAAATATTCACGGTGAGAAAAAAA‑ATAAAACCAAATTTTGAGGGGGAGTTTGTGGCGG‑TGAA‑TTTTTCAAGAAAAAAAC‑AAAAACT‑G‑GT‑GTTGCCA‑TGATGAGCG‑AAATTAATAAGCAACAGGGAGTGAATAAGTTGAAAGAGATTGTCGATAACTTAAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaa < 1:608541/239‑1 (MQ=255) cTTATTTACGGATTGATCCATGATC‑TGTTAATTAAATATTAAGGGTGAAAAAAAAT‑AAAAAACCACATTTTAAGTGGAATTTAGTGGCGG‑TGAA‑TTTTACCAGAAAAAAAA‑AAAACCG‑G‑GA‑TTTGCAA‑TGATGAGCG‑AAAGTAATAACCAACAGGTAGTTAAAAAGTGGAAAGAGATTGTCGTTACTTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaa < 2:529126/239‑1 (MQ=255) cTTATTTACGCTTTAATTCACGAAT‑TGTTAATTACATATGCACGGTGGCAAAAAAT‑AAAAAACCACATTTTTAGGGGTAGTTTGTGGCGG‑TAAA‑TTTTCCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TAATGAGCG‑AAAGTAAAAAGCAACAGGCAGTGAATAATTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaa < 1:148751/239‑1 (MQ=255) ttATTTTCGTGTTAATCCACAAAC‑TGTTAATTACATTTTCACGGTGGCAAAAAAT‑AAAAAACAACATTTATAGGGGTGGTTTGTGGCGG‑TAAA‑TTTTCCAAAAAAAATAC‑AAAAACG‑G‑GA‑GTTCCAA‑TAAGGATCA‑AAATAAATAAGCAACAGGCATTAAATAAGTGGAAAGAGATTGTCGTTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaaa < 2:161297/239‑1 (MQ=255) tATTTTCGCGTTGATTCACGAAC‑TTTTAATTACATATCCCCGGGGGAAAAAAAT‑AAAAACCCACATTTTTAGTGGTAGTTTGTGGCGG‑TAAA‑TTTTTCAAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCA‑AAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa < 1:42500/239‑1 (MQ=255) tATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑ATTTTTTATACAAAAAC‑AAAAACT‑T‑GA‑GTTGCCA‑TTGTGTGGG‑TAACGAAAAAAAAAAAAGCACAGAAAAAATTTGAAAAGATTTTGCATAACTTTTA‑CGCCCATATTTCT‑ACCCGAATGCCTCGTGAAGCGGTGGGTAAACTaaa > 2:702996/1‑238 (MQ=255) tATTTTCGCGTTGATTCAAGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑AAAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCAAGACAAATAC‑AAAAACG‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa < 1:154220/239‑1 (MQ=255) aagaagtgtataacggaaataagtGTTAATTAGATATTCACGGGGGAAAAAAAT‑AAAAAACCAAATTTTTAGGGGTATTTTGTGGGGG‑TGAA‑TTTATCAAGAAAAATAA‑AAAAACT‑G‑GA‑GTTGCCA‑GGATGAGGA‑AAATTAATAAACAACAGGAAGTGAATAAGTGGACAGAGATTGGCGCTAATTTAAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa < 2:120312/216‑1 (MQ=255) gTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑ATTTTTCAAACAAAAAC‑AAAAAAA‑G‑GA‑GTTTGCA‑TTGTGGGGG‑AAAGGAAAAAAAAAAAAGGAAGGAAAAAATTGACAGAGATTTTCGCTAACCTTAA‑CCCCAAGATTTTT‑TACCGAATGACTGGAGACGGGGGGGGTAAAAAAAAAAAACTTAAAGAACCCGaaaaggcc > 2:25389/1‑234 (MQ=255) attaattatTCAGGGGGAAAAAAAAT‑ATAAAACAACATTTATAGTGGTAGTTTGTGGGGG‑TAAA‑TTTTACCAGACAAATAC‑AAAAACG‑G‑AA‑GTTGCCA‑TGATGAGGA‑AAAGTAATAAGCAACAGGCAGTTAATAAGTTGACTGAGATGGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGa < 1:344051/233‑1 (MQ=255) ttAAATATCCAC‑GTTGCAAAAAATAATAAAACCACTGTATTAGTGGTAGTTTGTGTCGG‑TGAA‑TTATGCCAGAAAAATAC‑AAAAACG‑G‑GA‑GTTTCAA‑GGATGAGCA‑AAATTAATAAGCAACAGGAAGGTAATAGGTTGACAGAGATTGTCGATATTTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGAt < 2:322415/239‑1 (MQ=255) aCATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCAAACAAAATA‑AAAAAAT‑G‑GA‑GTTGCCA‑TGGTGTGGG‑GAAAGAATAAACAAAAAGAAAGGGAAAAGGTTACAAAAAATTGCGCTAAATTTTA‑CGCCCAGATTTTT‑TCCCGAAAGCCTGATTGCGTGGGGGGTAAAATAAAAAAGCTAAAAGaatgtcttttttacaacact > 1:120312/1‑219 (MQ=255) tgttcggggTGGCAAAAAAT‑AAAAAACCAAATTGTTAGTGGTAGTTTGTGGGGG‑TGAA‑TTTTCCCAAAAAAAAAC‑AAAAACT‑G‑GT‑GTTGCCA‑GAATGAGGA‑AAATTAAAAAGCAACGGGCAGTGAATAGGTGGACAGAGATTGTCGTTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGa < 2:1045251/232‑1 (MQ=255) tatTCAGGGTGGAAAAAAAT‑AAAAAACCACATTTTTAGTGGTAGTTTGGGGCGG‑TAAT‑TTTTTCCAGACAATTAA‑AAAAACA‑G‑GA‑GTGGCCA‑TGAGGAGGA‑AAAGTAAAAAGAAACAGGCGGGGAAGAAATGTAAATAGGTGGCCGGAAGCTTCAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGa < 1:109395/239‑1 (MQ=255) atTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCAAACAAAAAA‑AAAAAAT‑T‑GA‑GTTTCCA‑TGATGAGCG‑GAAAGAATAAACAAAAAGCAGTGAAAAAGATTACAGAGATTGTCGCTACATTTAC‑CCCCATGATTTCT‑ACCCGAAAGCCTGATGACGTGGTGGAGAAACTAAAAAAACTAAAAGAAGCCGGAACATCG‑TCGATggggga > 1:958632/1‑237 (MQ=255) atTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAAAT‑T‑GA‑GTTGCCA‑TGATGAGCG‑CAAGTAATAAACAACAAGCAGGGGAAAAAATGACAGAGAGTTTCGCTAAATTTAC‑CGCCATGATTTTT‑ACCCGAATACCTGATGAAGGGGGGGGTAAACTAAAAAAACTAAAGGATGCCGAAAACACG‑TCGGTGGGGaa > 1:1101168/1‑239 (MQ=255) atTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑ATTTTTCTGACAAATAA‑AAAAAAT‑G‑GG‑GGTGTCA‑TTGAGGGCG‑GAAGGTAAAAACAAAAAGAAAAGAATAAATTTATAGAGAACGTCGCTAACTTTACACCCCAGATTTTTT‑ACCCAAATG‑CTGAGGCAGGGGTGGGTAAAATAAAAAAAATTAAAGATATCCAAAAGTCG‑TCGAtatggga > 2:726296/1‑233 (MQ=255) atTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑ATTTTTCAAACAAAAAC‑AAAAAAT‑G‑GA‑GTTGGCA‑TGGTGAGCG‑AAAGTAATAAACAAAAAGCAGAGAAAAAAATGATAGAGATTGGCTGTAAATTTAC‑CACCACGATTTTT‑ACCCGAAGACCAGATGACGCGGGGGATAAACAAAAAAAAACAAAAAATTCCGACAcgtcg‑tacaggggggg > 2:966271/1‑229 (MQ=255) aCGGTGGAAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTGGTGGCGG‑TGAA‑TTTTCCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCA‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAAtt < 1:757226/239‑1 (MQ=255) aCGGTGGAAAAAAAT‑AAAAACCCAAATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCAAAAAAAATAA‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCA‑AAAGTAATAAGAAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAAtt < 1:470818/239‑1 (MQ=255) ggtgaaaaaaaaT‑AAAAAACCACATTTTTAGTGGTAGTTGGGGGCGG‑TGAA‑TTTTCCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTAt < 1:25389/233‑1 (MQ=255) ggggCAAAAAAT‑ATAAAACCATATTTTTGGGGGTAGGTTGGGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACG‑G‑GA‑GTTGCCA‑TGAGGAGGG‑AAAGTAATACGCAAAGGGTAGTGAATAGGTTGACAGAGATTGTCGTTACCTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTAt < 1:164518/236‑1 (MQ=255) tGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCAAACAAAAAA‑AAAAAAT‑T‑GAGGTTGCCT‑TGGTGGGGG‑AAATAAAAAAAAAACA‑GCAAAGAATAAGGTGAACAAGATTTTCCCTTAATTTAA‑CACCAATATTTTTAACCCGATGCCCTGTTACGGTGTGGGAAAAACAAAAAAAGTCAAAGAAACCCAAAACGCCG‑GCG‑TGGGGGAAATTAttt > 2:285026/1‑237 (MQ=255) tGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑CGAA‑TTTTTTTAGACAAAAAA‑AAAAACT‑G‑GA‑GGTGTCA‑TGGTGGGGG‑AAAGTAATAAGCAAAAAGAAAAGAAAAAATTGACAGAGATTGTCGCGAAATTTTC‑AACCACAATTTTT‑TCACGAATACCTGGTGTCGGGGGGGGTACACTCAAAAAACTAAAAAATGCCGAAAcgtcgctgagtgggtaaaaaaatc > 2:382661/1‑220 (MQ=255) aaaaT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑GGATGAGCA‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCAAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATa < 1:1124421/239‑1 (MQ=255) tgaataagaaaaaacaTTTTTAGTGGGAGTTTGTGGGGG‑TAAA‑TTTTCCCAAAAAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑GGATGAGCA‑AAAGTAAAAAGCAACGGGCAGTGAATAAGTTGACAGAGATTGTCGCTACCTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATa < 2:814272/226‑1 (MQ=255) aaT‑ATAAAACCACATTTTTGGTGGTAGTTGGGGGGGG‑TGAA‑TTTTTCAAAAAAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGAGGAGCA‑AAAGTAATAAGCAACAGGCAGGGAATAAGTTGAAAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACg < 1:915883/239‑1 (MQ=255) aaaCCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑ATTTTTCAAACAAAAAA‑AAAAAAA‑T‑GA‑GGTGGCA‑TGATGGGGG‑AAAGGAATAAAAAACAAGCAAAAAAAAAAATGAAAGAGAATGTCGCCAACTTTAC‑ACCCATGATTTCT‑ACCCCAAAAACTGATGACGGGGGGGATAAACTAAAAAAGTCAAACAGAGCCGCAACATCG‑TCGGTGGGGGAAATTATATTCCCCACGAAGTTc > 2:350200/1‑239 (MQ=255) caTTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCAGACAAATAC‑AAAAACT‑T‑GA‑GGTTTCA‑TGGTGCGAC‑ATAATAAAATACAAAAGACATTGAATGAGGTGTAAGAATTTCTAGCTTAAATTAC‑CGCCCTCAGTTTT‑ACCACCACGACTGATGACGTGGTGGATATACTCACACACCTTAATGCGGCCACAACATCGCTCGA‑GGGGGAAATTATAATCAATACCATGTTCTacaaa > 2:12608/1‑238 (MQ=255) caTTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTTCAGACAAAAAA‑AAAAAAT‑T‑GA‑GGTGGCA‑TGAAGAGCG‑AAAGGAATAAACAAAAAGCAAAGAATAAATTGACAAAGGATTTCGCTAAATTTTC‑CGCCATGATTTTT‑ACACGAAAGACCGATGACGGGGTGGGTAAAATAAAAAAACTAAAACAAAGCGAAACGGCG‑GCGCTGGGGGAAAATATCTAACATAcaaaggtcggaaaa > 2:842129/1‑226 (MQ=255) ggTAGTTTG‑GGGGG‑GGAA‑ATTTTTCAAAAAAAAAC‑AAAAACTGG‑GA‑TTTGCAA‑TGATGAGGA‑AAAGTAAAAAGAAACAGAAAGTGAATAGGTTAAAAGAGATTGCCGTTAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCaaaa < 2:83476/237‑1 (MQ=255) gtgtggggggg‑TAAA‑TTTTGCAAAAAAAAAAC‑AAAAAGT‑G‑AA‑GTTGCCA‑GGGTGAGCG‑AAAGTAATAAGCAAGAGGAAGTAAATAAGTGGAAGGAAATTGTCGTTAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa < 2:353338/229‑1 (MQ=255) ttcccAGACAAATAA‑AAAAACT‑G‑GA‑GTTGCCA‑TGGTGAGCG‑AAATTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg < 1:538631/236‑1 (MQ=255) aaTAG‑AAAAACA‑G‑AA‑GTTGCAA‑TGAGGAGCG‑AAATTAATAAGCAACAGGAAGTGAATAAGTAGACAGAGATTGTCGATAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGa < 1:884732/239‑1 (MQ=255) aC‑AAAAACG‑G‑GA‑TTTGCCA‑TGATGAGCG‑AAATTAATAACCACCAGGAAGTAAATAATTTGACAGAGATTGTCTCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGacac < 1:1054575/239‑1 (MQ=255) aaaCT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg > 2:55895/1‑239 (MQ=255) aaaCT‑G‑GA‑GTGGCGA‑TGATGAGCG‑AAAGTAATAAGCAAAAGGCAGTGAAAAAGTGAACAGAGATTGACGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg < 2:401234/239‑1 (MQ=255) aaCT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAACCAACAGACAGTGAATAAGTTGACAGGTATTGTCTCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg < 1:915853/239‑1 (MQ=255) aaCT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAATAATAAGCAACAGGCAGGGAATAAGTTGACAGAGATTGTCCCTACCTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg < 1:382661/239‑1 (MQ=255) aggtagattgacatggatgaGGA‑AAAGAAAAAAGCAACAGGCATGAAATAATATGACGTAGTTTGCGTCTGTCTTAAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGGGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg < 2:403372/224‑1 (MQ=255) gatgaGCG‑AAAGTAATAAGCAACAGGCAGTGAATACGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAACCTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGCTGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACTTGAATCGTCCTGCCTGTCAGGACACCGGAGAGATTATGTTCTTCg > 2:643429/1‑239 (MQ=255) cG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg > 2:736753/1‑239 (MQ=255) ccAGGCAGTGAATAAGTTGACAGAGAGTGTCGCTATCTTTAC‑CGACATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc < 1:458224/238‑1 (MQ=255) cacgCAGTCAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGCGGCGGATAAACTAAAACAGCTAAAGGGTGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATCGGATGTTCGACAACACGCAAAAAGCGATTGACCTGAATCACCCTGCCTGTCAGGACACAGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGATTacc > 2:738786/4‑239 (MQ=255) cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACACCATGCAACAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGtt > 1:475701/1‑212 (MQ=255) cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc > 1:651527/1‑239 (MQ=255) cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGCTCCCGCTTccc > 1:340625/1‑239 (MQ=255) aGGTAGTAAATAAGTAGACAGATCTGGTCGATAACTATAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACATCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGTCCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCa < 2:1201146/239‑1 (MQ=255) aGGCAGTGAATAAGTTGAAAGGGATGGTCGCTAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCa < 1:871326/239‑1 (MQ=255) tAATTTGAAAGATATTTTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCg < 1:726296/239‑1 (MQ=255) aaaGTGGAAAGAGTTGGTCGTTAATTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCg < 1:12608/238‑1 (MQ=255) gaTTGTCGCTAACTTTAC‑CGCTATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGGCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAg < 2:117852/237‑1 (MQ=255) aTTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCAt > 2:645820/1‑239 (MQ=255) aTTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCAt > 2:870816/1‑239 (MQ=255) ttGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCAt > 1:964123/1‑238 (MQ=255) ttGTCGATACCTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCATa < 1:285026/239‑1 (MQ=255) ttGGCGCAAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCATa < 1:966271/239‑1 (MQ=255) | ATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAAC‑TGTTAATTACATATTCACGGTGGCAAAAAAT‑ATAAAACCACATTTTTAGTGGTAGTTTGTGGCGG‑TGAA‑TTTTTCCAGACAAATAC‑AAAAACT‑G‑GA‑GTTGCCA‑TGATGAGCG‑AAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAC‑CGCCATGATTTCT‑ACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCG‑TCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGCAAAGCATA > NC_000913/3206276‑3206748 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |