| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,576,077 | C→A | 14.7% | D515Y (GAT→TAT) | yddB ← | putative TonB‑dependent outer membrane receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,576,077 | 0 | C | A | 14.7% | 186.9 / 3.0 | 62 | D515Y (GAT→TAT) | yddB | putative TonB‑dependent outer membrane receptor |
| Reads supporting (aligned to +/- strand): ref base C (45/6); new base A (2/8); total (48/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.71e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTAT > NC_000913/1575847‑1576313 | aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGATTGCTTTTGATAATTTGATCATGCGATTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGTTTTTCTGCTGCTGTCCCATTGCCAGTTCATCGTTATCAGGCGTTTTCAAATCC‑TG‑ATCACGCGTCAGAGTTTTCTTACCTGTTACCGATTCCGT‑CCAGCTATTACGGATATCACGTTATCCCATTTCacgcatct > 1:372496/1‑232 (MQ=255)aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAatat > 2:110312/1‑239 (MQ=255)aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAatat > 2:55195/1‑239 (MQ=255)aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAatat > 1:563173/1‑239 (MQ=255)aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CAAGCTATTGCGGATCTCACGTAATCCCATATCAAGAatat > 1:1065844/1‑239 (MQ=255) tAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATAtt > 1:592613/1‑238 (MQ=255) tAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATAtt > 2:124897/1‑238 (MQ=255) tAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATAAAGAATAtt > 2:949385/1‑238 (MQ=255) tggtggTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTccc > 2:553358/1‑238 (MQ=255) tggtggTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTccc > 2:337557/1‑238 (MQ=255) gtggtTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGcc > 2:651016/1‑239 (MQ=255) gtTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATa > 2:1090785/1‑239 (MQ=255) ttttAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAg > 2:407447/1‑239 (MQ=255) tttAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCTGCCATAGt > 2:846968/1‑239 (MQ=255) cgcTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTta > 2:273506/1‑239 (MQ=255) gTCGGTACGATTTCTTTTGCTGTTTTGATCATGCGCTTCACGGTAAAAATAGTTTGCACGCGCAATAACTTTCTTACCGATTTTCTGCTGCAATCCCATTGCCATTTCATCTTTATAAGGCTTTTTAAAATCC‑TG‑ATAACGCGTCAGATTTTTTTTACCTAATACCTATCCCGT‑CCAGCTATTGCGGATATAACTAAACCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAAc < 2:563173/239‑1 (MQ=255) tGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATc > 2:216931/1‑239 (MQ=255) tGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCACATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAAta > 1:1090410/1‑238 (MQ=255) tCATGCGCTTCACGTTAAACATAGTTTGCACGCGAAATAACGTTCTTACCGATTTCTTGCTGCAACCCCATTGCCTTTTCATCTTTAAAAGGCTTTTTAAAATCC‑TG‑ATACCGCGTCATATTTTTATTACCTAATACCGATTCCGT‑CCAGCTATTGCGAATATCACGTACCCCAATATAAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAg < 2:592613/238‑1 (MQ=255) gcgcTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCaaaa > 2:372333/1‑239 (MQ=255) gcTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAat > 2:1078909/1‑239 (MQ=255) aaCATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCg > 2:449967/1‑239 (MQ=255) aTAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCAGATGCAATCCCATTGCCAGTTCACCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCACAGTTTTATTACCAGATACCGATTCCGT‑CCAGCTATTGCGGATATCAAGTACTCCCATATTAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATAACTGTAGCTTGATTATCAACAATATCCCAATCCgc > 2:993454/1‑236 (MQ=255) ttGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATaaa > 2:1190509/1‑238 (MQ=255) ttGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTCATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATaaa > 1:1159125/1‑238 (MQ=255) aatagcaagcAATACCTTTCTCACCTATTTTCTTCTGCACCCCCATTGCCACTTCTTCTTTATAAGGC‑TTTTTAAATCCTTG‑AAAGCGTTACAGTTTTTTTTTACCTAACCCCTATCTGCC‑CCAGCTATGGCGGATTTATCTAAACCCTATATCAAAAATTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAg < 1:831976/231‑1 (MQ=255) gaaaTAACTTTCTTACGGATTTTCTCCTCCACCCCAATTGCCA‑TTCAATGTTAAAAAGGCTTTTCAAAATC‑TGAAAAACGCGTCAGATTTTTATTCCCGGATACCGATCCCGC‑CCACTTTTTGCGAATACCACTTAACCCAATACAAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCgggg < 2:12770/236‑1 (MQ=255) tttttgtACCGTTTTTCCGCTCAACTCCCATGGCCATTTATTCGTTATAGGTCTTTTACAAACCC‑AT‑ATAACGCGTAAGATTTTTATTCCTTGATCCCGTTTCCGC‑CCAGCTTATGGGAATATCACGTAACCCAATATCAAAAATTTCCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATtg < 1:337557/233‑1 (MQ=255) ctttcttcCCGTTTTTCTGCTACAACCCCCTTCCATTTTCATGTTTATAGGTCGTTTTCAAATCT‑TT‑ATACCGCGTCATTTTTTTATTCCTTGATACCGACTCTGT‑CCAGTTATTGCGATTATCACATAATCCCATATAAAGATTTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATtg < 1:449967/237‑1 (MQ=255) cTTGCCGATTTTCTGCGCCAAGCGCATGGCCAGTTATTTGTTAGAGGTCGTGTTGAAATGT‑TT‑AAAGTGCGTCATATTTTATTTACCTGAT‑CGGGTTCCATCCCAGTTATTGGAGCTACAAGGAAATCCCAAATAAAAATTTTGCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGt < 1:369642/239‑1 (MQ=255) ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAACGCGCGGGGAGATATTGTGGtt > 2:169729/1‑239 (MQ=255) ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCTCGGGGAGATATTGTGGtt > 2:786878/1‑239 (MQ=255) ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGgaga > 2:831976/1‑229 (MQ=255) ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATAATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGTTATTGTGGtt > 2:159314/1‑239 (MQ=255) aCCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTg > 2:1111707/1‑239 (MQ=255) aCCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTg > 2:311156/1‑239 (MQ=255) aCCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGATTTCATATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATAAAGAATATTCCCGACATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTAGATTAGCAAAAATAGCACTTTACTACATAAATCGTGGGGAGAGTTTGTGTTTTg > 1:255576/1‑239 (MQ=255) tCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAg > 2:923805/1‑239 (MQ=255) ctgcAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTg > 2:1071677/1‑238 (MQ=255) ttCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACg > 2:902772/1‑238 (MQ=255) tCATCGTTAAAAGGTGTTTCAAAATCC‑TA‑AAAACCGGTCAGTTTTTTATTCCCTAATCCCGATTCCGC‑CCAGTTTTGGGAGATATCACAAAACCAAATAAAAAAATTATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGcc < 1:110312/239‑1 (MQ=255) taAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTaa > 2:617061/1‑239 (MQ=255) ggCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGATATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGCTGTCATAGCCATACCGCCCGCCGCGCATTAATg > 1:105307/1‑238 (MQ=255) cGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGac > 2:863532/1‑238 (MQ=255) ttttCAAATCC‑TG‑ATAACGAGTCAGAGTTTTATTACGTGACACCGATACCGT‑CCAGCTATTGAGCATATCACGTACTCCCATATCAACAATATTCAGACGATAGTAACGGTTATAACTCGCTGTACTCACAGCAGCTTGATTAGCAAACATATCCAATTCCGTACTATAGAGCGGGCCGTTATCGTGGTTTGCCAGATCAGTATCATAGTCATACCGCACGCCGGGCATTACTggaaca > 1:223426/1‑234 (MQ=255) aataccgaaTAACGGGTCATTTTTTTTTACCCTAATACCGCTTCCTA‑CCAGCTATTGCGAATAACACAAACCCCAATATAAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACg < 1:273506/231‑1 (MQ=255) cgcgTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATaaa > 2:475058/1‑152 (MQ=255) gTCAGATTTTATTTGCCTAATACAAATTCCCT‑ACATTTATTGCTAATATAACGTACCCCAAAATAAAAAATTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGAt < 2:372496/238‑1 (MQ=255) tttttatcccgcgatcctcaTTCCGT‑CCAGTTATGGCGTATATCATTTCACCCTATACCATGACTCTCCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCat < 1:786878/220‑1 (MQ=255) aTACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAg > 2:945255/1‑239 (MQ=255) aTACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAg > 2:425660/1‑239 (MQ=255) aTTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATaa > 2:839383/1‑71 (MQ=255) ttCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGGAACGGTTATAACCTGCTGTAATCATTGCGGTTTGACTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGAGGTTTGACAGATAGTTGTCATAGGCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGAGATCAGCCATATACGGCGTGTAGTTGCCaa > 2:23643/1‑239 (MQ=255) gT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTc > 2:721783/1‑238 (MQ=255) t‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTccc > 2:520554/1‑239 (MQ=255) acttatgtggaatatCACGTACTCATAAAAAAAAAATATCACCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAgg < 1:520554/228‑1 (MQ=255) cTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAggcg > 2:522880/1‑239 (MQ=255) gCGGATATCCCGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGGTATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCCGGCGGcatt > 1:371610/1‑239 (MQ=255) atatCACAAAACCCCATAACAAAAATTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGC‑AAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGcctttacct < 1:171429/239‑1 (MQ=255) cACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGC‑AAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTAt > 2:171429/1‑239 (MQ=255) acagtaatacAATAATCTTGCCGCCAGAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTaa < 1:617061/230‑1 (MQ=255) aTCCCACAACAAAAATATTCCCGCCATGGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGTTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGAGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTaa < 1:1078909/239‑1 (MQ=255) tatCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAatggta > 1:1003460/1‑239 (MQ=255) aacAAGAATATCCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAatggtat < 2:915139/237‑1 (MQ=255) | AGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTAT > NC_000913/1575847‑1576313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |