| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,782,912 | A→C | 19.9% | V250G (GTG→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,782,912 | 0 | A | C | 19.9% | 112.3 / 5.8 | 77 | V250G (GTG→GGG) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Reads supporting (aligned to +/- strand): ref base A (28/32); new base C (6/11); total (34/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCA > NC_000913/3782678‑3783149 | aGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGTGACTGGTTGT‑CGGTACAGGTAAGCACCA‑g < 2:329126/239‑1 (MQ=255) tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCGGCTTGGTGT‑CGGGTAAGGTAAACACCA‑AATCGCCa > 2:857832/1‑239 (MQ=255) tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCCTCACTGGTTGT‑CGGGACAGCGAAGCACCA‑AAACGCCa > 1:917818/1‑239 (MQ=255) tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGGTGT‑CGGTGAAGGGAAGGACCC‑AAACGCCa > 2:574333/1‑239 (MQ=255) tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGTTTT‑CCGTACCGGGGAGCACCaacacgcccagc > 2:433040/1‑227 (MQ=255) cTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCa < 2:1125230/239‑1 (MQ=255) tcgcggcctttttttCCGAATTATAATCCTAGTTAAATTCCCTCTGTTGTTGGCATTTCAACGCGAACGCGATGCGCTCGTTGGCGGACTCCTTCCGTATCGCGCTAGCTTCCCACCACCAGTCCAATCTTCTCCTGCCCCCTTTGTGCATCAAGGCCAGGACCAACCGTCAGCCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGACAAGGTAAGCACCA‑GACCGCCAAGCCCCGCCAt < 1:699977/230‑1 (MQ=255) ccgcgcgcgTTTTTTCCTCAATATAATACTGAAGAAATTTCCTCGTTTATTGGCATTTCACCGCCGAAGCGATGCGCAGGTCCGCGGACTTCTTTCTTATTGCGTTGGCCTCCCACCCCCTGACCAATCTTCTCCGGCACGTTTGTTCCATCCATGCCCTGACCGACCTTCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGTTACAGGTAACCCCCA‑GACCGCCAAGCCCCGCCAt < 1:121969/238‑1 (MQ=255) cgcgcgTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACCGGGTTT‑CGGTAAAGGTCAGCaaccttcccttataccaatccgca > 1:1081090/1‑214 (MQ=255) gTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGTTGT‑CGGTACGGGGTAGCACCA‑GATCCCCAAGCCCCCCCCTG‑CCCCTaa > 2:460549/1‑239 (MQ=255) gTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCC‑TCCACCACCTGCCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGTTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATaa < 2:1029668/238‑1 (MQ=255) ccGCAATATAATACTTGTTAAATTCCCTGGGTTATTGGATTTCCAACGCCGAAGCGATGCGCAAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGCCAAATCTTCCCCGGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGGCCAAACCGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GACCGCAAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGc < 1:940548/239‑1 (MQ=255) atatAATCCTTGTTAAATTTCCTCGTTTTTGGGCATTCCAACGCCGAAGCGATGCGCCGGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGTTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GACCGCAAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGt < 1:471277/239‑1 (MQ=255) gctggATAAATTCCCGCGGTTTTTGGCATTCCAACGCCGAACCGATGCGCCAGTTCGCGGCCTTCTTTCTTTTTGCGGTACCCTTCCTCCCCTTGCCCAATTGTCTCCTGCGGGCTTTGTACAGCCATGCCGTGACCGAGCATGTTGCCAAAGCGGGGGTTACGCGACTGGTTGT‑CGGTCCAGGAAAGCCCCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCAcc < 1:969787/235‑1 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGCCTCGTTGT‑CGGGACCGGGAAGCCCCA‑AAACACCAAACCCCCCCCCT‑CCCACAA‑AGGTGGGCAGGGGC‑‑GCAcccca > 1:143559/1‑236 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑AATCGCCAAGCCCCCCCATG‑CCCATAA‑AAGG‑GGCAGGGGCG‑GCACCCCg‑c > 2:981734/1‑239 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGGTGT‑CGGGACAGGGAAGCACCA‑AATCGCCAAGCCCCCCCCTA‑CCCCTAA‑AAGT‑GGCAGGGGCG‑GCACCCAg‑c > 2:172493/1‑239 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCCACTGGGTGT‑CGGGACAGGGAAACACCA‑AAACGCCACACCCCCCCCTG‑CCCATAC‑AGGC‑GGGAGGGTGG‑GCAccccg > 1:1190638/1‑236 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGACTGGTTGT‑CGGGACAGGTAATGACCA‑AATCCCCCACACACCCCCAG‑ACCACAA‑AGCA‑GGCAGGGTCG‑GGAccacac > 1:570572/1‑235 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGACTGGTTGT‑CGGGACAGGGAAGCACCA‑AAGCGCCCAACCCCCCCATG‑CCCCTAA‑AAGG‑GGGAGGGGCG‑GCAccccg > 2:703181/1‑236 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTCACGCGACTTGTGGT‑AGGTGCACGGCAACACCACAATCCCCAAACCCCCCCA‑G‑CACCTAA‑AACG‑GGCAGGGTGGCGCAcccca > 1:842522/1‑237 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGCGACCCCAATGGGTGTCCGGTA‑GGAGAAGCACCC‑CATCGCCCAACCCCGCCCCA‑CCCATAA‑AAGA‑CGCCGGggcg‑gccgccac > 1:763724/1‑232 (MQ=255) aTTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGGTTCGCGACTGGTTGT‑CGGTACAGGTAAGACCCA‑CATCGCCCAACCCCGCCCTG‑CCCCTAA‑AAGT‑GGGCGGGGCG‑GCACCCCA‑cgccg > 2:1177600/1‑238 (MQ=255) tCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGGACAGGGAAGCACCA‑AATCGCCAAGCCCCCCCATG‑CCCCTAA‑AGGT‑GGCAGGGGCG‑GGACCCAC‑CGCCGCAc > 2:831939/1‑238 (MQ=255) ttATTGGCATTTCAACCCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGa < 2:1155246/236‑1 (MQ=255) ttATTGGCATTGCAATCCCGAGGCTATCCGCCGGTGCGCGGACTTCGTTCCTATTGCGGTCGCCTCCCACCACCTGACCAATCTTCCCCGGCGCGCTTTGTACACCCTGGCCCGGACCGAGCACCATGCCAAACCGGCGGTTACGCGACTGTTTTT‑CGTTACAGGTAAGCCCCA‑GACCCCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGAcgc < 1:685783/239‑1 (MQ=255) cattcaaaCGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATGGCGGTAGCCTTCCACCCCCGGACCAATCTTCTCCTGCGCGCTTTGTACACCCATGCCCTGACCGACCATCATGCCAAACCGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACAtt < 1:981734/232‑1 (MQ=255) tCAACGCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGCCCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc < 2:906319/239‑1 (MQ=255) tCAACGCCGAAGCGATGCGCCAGTGCGCGGACTTCTTTCGTATTGCGGTAGCCTCCCACCCCCTGCCCAATCTTCCCCGGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑GGGTACAGGTAAGCACCA‑GAGCGCAAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc < 2:260333/239‑1 (MQ=255) tCAACCCCGAGGCGATGCGCCTGTTCGCGGCCTTCTTTCGTATTGCGGTACCCTTCCCCCCCCTGCCCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACGGAGCATCAGGCCAAAAGGGCGGTTCCGCGACTGGTGGT‑CGGTACAGGTAAGCCCCA‑GACCGCCAGGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc < 1:845969/239‑1 (MQ=255) gcAACGCCGAAGCTATGCGCCCTTTCGCGGACTTCTTTCGTATTGCGTTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCAAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc < 2:657570/238‑1 (MQ=255) aCGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACACCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagccag < 2:917818/239‑1 (MQ=255) ccGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGCCTGGGTGT‑CGGTCCAGGGAAGCACCA‑GAAGCCCAAGCCCCGCCATG‑CCCCTAA‑AGGT‑GGCAGGGGCG‑GCACCCAC‑GGCCGCCCCCAGACGGCACACTTccacccacc > 1:568568/1‑230 (MQ=255) cGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGATACCCCGCCGGCTTG‑CGGGACAGGGGTACCACA‑AAAAGCCAAACCCCGCCACG‑CCCAAAA‑AAGG‑AGCAGGGGGG‑GAGCCCCG‑CGCGCCCCCCAGAcgcgcaacctcacacaccac > 1:527562/1‑222 (MQ=255) aaGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑AATCGCCAAACCCCCCCCTG‑CCCCTAA‑AAGG‑GGCAGGGGCG‑GCACCCCG‑CGCCGCACCCAGACGCGACCTTTCACCCAAcccccc > 2:1153798/1‑236 (MQ=255) aaGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGAATGGGTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGG‑GGCAGGGGCG‑GCACCCAG‑CGCCGCACCAAGAAGCGGCAATTCAGCCAACCCACg > 2:959680/1‑239 (MQ=255) cAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGCCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAgcg < 2:884660/239‑1 (MQ=255) cGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCGCCTGGGTGT‑CGGTACAGGTAAGCACCA‑CAAAGCCCAACCCCGCCATG‑CCCCTAA‑AGGG‑GGCAGGGGCG‑GGACCCAG‑CGCCGCCCCAACAAGCGCCAATTTCGCCCGCCCACCGGGGATCAGACCCGCACGCGCACTCGCACCAAAAc > 1:310229/1‑238 (MQ=255) acccTCCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑a < 2:310229/237‑1 (MQ=255) caccacCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCCCCCCTGGTTGT‑CGGTAACGGTAAGCCCCC‑GATCGCCAAGCCCCCCCCTG‑CCCCTAA‑AGGT‑GGCAGGGGCG‑GCACCCAC‑CGCCGCCCCCCGCCCCGACACTTCAGCCAGCCCCCGGGCGGTCTGCGCCCCCCCCCCATTCGCACCACAACCGAT‑ACCGTCg > 1:593136/1‑238 (MQ=255) accaccTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGC‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGa < 2:171357/239‑1 (MQ=255) cccccTGCCCAATCTTCCCCTGCCCGCTTTGTCCACCCATGCCCTCACCGAGCACCACCCCAAACCGGCGGTCACGCGCTTGGTTGT‑CGTTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGAc < 1:959680/236‑1 (MQ=255) ccacgttcccAATTTTTCCCGGCGCGTTTGTTAAATCCAGGCCCCGCCCGAGCATAATGCCAAAACGGCGTTTCCGCGACTGTTTGT‑CGGTACAGGTAAGCACCA‑AACCCCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGAc < 1:901853/231‑1 (MQ=255) ggcccATTCTTCCCCTGCGCCCTTTGTACACCCATGCCTGGACCGACCACCAGCCAAAAACGGCGGTTCCGCGCCGGGTTGC‑GGGTACAGGTAAGCCCCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATccc < 1:318426/236‑1 (MQ=255) gccagaTCTTCTCCGGCGCGTTTTGTACACCCATGCCCTGACCGAGCATCAGGCAAAAACGGCGGTTCCGCGACGGGTTGC‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATccc < 2:1106378/233‑1 (MQ=255) tcttttCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCaaa < 2:747130/211‑1 (MQ=255) tcttctCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCCACTGGTTGT‑CGGGACCGGTAAACACCA‑GCTCGCCAAGCCCCCCCATT‑CCCCTTA‑AGCC‑GGCAACGTGG‑GCACCCCGACGCGCAACCACTACCCGCCATTCCA‑CTACCCCACGCGCGGTCAGCCCCCCACACGCATCCGCCCCCAAACCGCA‑ACACCCGGACATCACCccacca > 1:1188485/1‑239 (MQ=255) tcttctCCTGCGCGCTTTGTACACCCAGGCCCTGCCCGAGCATCATGCCAAAACGGCGTTTACGCGCCTGTTTGC‑CGGTACAGGTAAGCCCCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGa < 2:944407/216‑1 (MQ=255) tcCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGGACAAGTAAAACCCC‑AAACGCCAAGCCCCCCCCCGCCCCATAA‑AGG‑‑GGCAGGGGCG‑GCCCCCCC‑CGCCCCACCCAGACGCGCCATTTCAGCCAGCCCCCGGGGGAGCAGCGCCCCACCCGCACTCGCCCCCACACAGAT‑Acccccggccacaccccccccaccac > 1:1044119/1‑215 (MQ=255) cTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGCCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCCCCA‑GACCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCaa < 2:568568/239‑1 (MQ=255) gcgcgcTTTGTCCACCCTTGCCCTGACCGAGCATCATGCCAAAACGGCGTTTACGCGTCTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATa < 2:963057/239‑1 (MQ=255) cgcgcTTTGTACATCCATGCCCTGACCGAGCATGATGCCAAAACGGCGGTTACGCGACCGGGTGT‑CGGTACAGGCAAGCACCA‑GAACGCCCAACCCCGCCCTC‑CCCCCAA‑AAGG‑GGCAGGGGCG‑GCACCCAC‑CGCCCCACCAACAAGCCACATTTTCTCCAACCCACGGGGGATCAGCGCCCCACGCCCACTCGCCCCCCAACCACG‑ACCGCCGCACATCCCCCCACCACTAGCacaa > 1:1018894/1‑235 (MQ=255) cgcgcTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGTTTT‑CGGTACAGGTAAACACCA‑AAAAGCCCAACCCCCCCACG‑CCCCTAA‑AGGT‑GGCAGGGGCC‑GCACCCAG‑CGCCGCCCCCACAACCGCCACTTTAGCCACCCCACCGGGGGGCAGCGCCGCACGCGCGCTCGCACCCACACCCAT‑ACCGCCCGCCATCCCCGCCCCCATGGcgctc > 1:1106378/1‑234 (MQ=255) cgcgcTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑TGGGAAAGGGAAGCACCA‑AATCGCCCAGCCCCCCCCCG‑CCCCTAA‑AAGG‑GGCGGGGGCG‑GCACCCCG‑CGCCCCCCCACGACGCGCCATTTTAGCCAGCCCCCGGGGGATCAGCGCCGTACGCGCCGTCGCCCCCAAACCCCT‑AACGCCGGGAATCCCCccaccaccgcccata > 1:995549/1‑229 (MQ=255) aTCCATGCCCTGCCCGAGCATCATGCAAAAGCGGCGTTTACTCGACTGGTTGT‑CGGTACGGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCGCcg < 2:520/239‑1 (MQ=255) ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc < 2:167100/145‑1 (MQ=255) ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcgcg < 2:905556/239‑1 (MQ=255) ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcgcg < 2:6381/239‑1 (MQ=255) tGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGGACAAGGAACCACCA‑GAACCCCCAACCCCCCCATG‑CCCCTAA‑AAGG‑GGGCGGGGCG‑GCACCCAC‑CGCCCCCCCCCGACGCGACAATTATACCACCCCACGCGGGGGCACGGCCCGCAGCGCCCTTGCCCCAAAACCAATAACCCACGG‑CATCCCCGCCCCACAGCGAAGAACGCTTTTCACCCcgcc > 1:815248/1‑238 (MQ=255) cccTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAACCACCA‑GAGCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCgccgcc < 2:914199/239‑1 (MQ=255) cccTGACCGAGCATCATGCCAAAACGGCGGCTTAGCCGCTGGTTGT‑CGGGAAAGGTAAACCCCA‑AAACGCCAAACCCCGCCCTT‑CCCCTAACAGGG‑GGCGGGGCCG‑GC‑CCCAG‑CGCCGCCACCAGACGCGACCTTTCATCCAACCCCCAGGGGAACACCGCCAGAACCGCCATCCCACCAAAACACAC‑ACCGGCCGCCAAACCCGCACCACCGTGGATAACGTATTTCACCCcgccgc > 1:157676/1‑238 (MQ=255) ccTGCCCGAGCATCAGGCCAAACCGGCGGTTGCGCGACTGTTTGG‑CGGTACGGGTAAGCACAA‑GCCCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCa < 1:851479/239‑1 (MQ=255) tGACCGAGCATAATGCCAAACCGGCGTTGCCGCGACTGGTTGT‑CGGTACAGGAAAGCCCCA‑GACCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCCCCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑CCCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAg < 2:842522/239‑1 (MQ=255) aCCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTTT‑CGGGACAGGGAAGCACCA‑AAACGCCCAACCCCCCCACG‑CCCCTAA‑AAGG‑GGGCGGGTCG‑GCCCCCCG‑CGCCGCACCCAGACGCGACATTTCAGCCCGCCCACGGGGGATCAGCGCCGGTCGCGCATTCGCCCCCAAACCGGT‑ACCGCCGGGCATCCCCCCCCCCAAGGCCATAAAGTTTTTCTCCCCgccgcccaccg > 1:572207/1‑234 (MQ=255) gcGAGCACCAGGCCAAACCGGCGGTCACGCGGTTGGTTGT‑GGGTCCGGGAAGGCACAA‑GACCGCCAGCCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg < 1:831939/238‑1 (MQ=255) gacaaccatGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa < 2:1190638/233‑1 (MQ=255) gAGCATCATGCCAAAACGGCGTTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa < 2:143559/239‑1 (MQ=255) catcatGCCAAACCGGCGGTTACGCGACTGGTTGG‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGa < 2:331642/186‑1 (MQ=255) catcatGCCAAAACGGCGGTTACGCGGCTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGc < 2:681111/239‑1 (MQ=255) caccaggCCAAAACGGGGGTCCCGCGATGGGTTGT‑CGGTACGGGTAAGCCCCA‑GATCGCCAGCCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGc < 1:172493/233‑1 (MQ=255) ccAAAACGGGGGTTACGCGACTGGTGGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATg < 2:1044119/237‑1 (MQ=255) cggTTACGCGGCTGGTTGT‑CGGTACAAGGAAGCACCA‑AAACGCCAAGCCCCCCCATG‑CCCCTAA‑AAGG‑GGGAGGGTCG‑GCCCCCAG‑CGCCCCCCCAAGACGCGACATTTCAGCCAGCCCACGGGGGATCAACGCCGTACGCCCATTCGCCCCAAAACCGAT‑ACCGTCGGGCAACCCCCCCCCAATGGCAATAACGTTTTTCACCCCCCCGCCAAGCCGCCCGCCACAGCAAACCGGAtt > 1:824376/1‑239 (MQ=255) cggTTACGCGACTGGTGGT‑CGGTACAGGTAAGCCCCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGAt < 2:824376/238‑1 (MQ=255) tgccGGTAAAGATAAGCCCCA‑GCCCGCCCGCCCCCGCCATG‑CCCATAA‑GGGG‑GGCAGGGTGT‑GCGCCCAG‑CGCCGCACCAACACGCGACATGTCAGCCAGCCCACGGGTGATCAGCTCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGaa < 1:1043258/235‑1 (MQ=255) gTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACtttt > 2:563985/1‑239 (MQ=255) gTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGC‑CCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACtttt > 2:1077633/1‑238 (MQ=255) gTACAGGTAAGCACCA‑GATCGCCAAGCACCGCCATG‑CCCATAA‑AGGT‑GGCCGGGTCG‑GCACCCAG‑CGCCGCACCTAGACGCGCCCTTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGCCGGACATCCCCGCACCAACGGCAATAACGTTTTTCAACGCGCCGCCAAGCTGCAGCCCAATGAAATCCGCATTGCTgccaaaccggaacgtttt > 1:707642/1‑222 (MQ=255) cACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgca > 2:613472/1‑239 (MQ=255) | AGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATG‑CCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCA > NC_000913/3782678‑3783149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |