New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1192080	140 (0.860)	3 (0.020)	3/490	NT	2.2%	coding (552/642 nt)	hflD	putative lysogenization regulator
	?	NC_000913	= 1192096	137 (0.870)					coding (536/642 nt)	hflD	putative lysogenization regulator
Rejected: Frequency below/above cutoff threshold.

AGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1191787‑1192080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccgTGCTCTGGCACCAGGTCGGCGGCGGACGTCTGCAACTGATGTTTTCTCGTAATCGCCTG  <  NC_000913/1192096‑1192038                                                                                                                                                                                                                                                                                                                                                                   AGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCG                                                                   >  2:336403/1‑288   GTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATAGACAGGGGCAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTGCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGCTTACGAGAAACACTCAGTTGCAGACCTCGGCCG                                                                >  1:1238776/1‑289     AACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCC                                                              <  1:1479911/289‑1                                                 GCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGC                                                               >  1:137670/1‑244                                                 GCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGC                                                               <  2:137670/244‑1                                                                 TTTTCATCCAACGTCCTTCACATTGTCCACGGAGTTTCAGCAAACCGTATTCGCTGAAAATCCCGGGCAGCGCGCGGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGATGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGGCGCCGACCTGGTGCCAGAGCACGGCGTCGGGCGTCTGCAACTGATGTTTTCTCGTAATCGCCTG  <  1:111619/289‑1                                                                                                                                                                                                                       GGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGGACGTCTGCAACTGATGTTTTCTCGTA          >  1:168771/1‑131                                                                                                                                                                                                                       GGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCGACCTGGTGCCAGAGCACGGCGGCGGACGTCTGCAACTGATGTTTTCTCGTA          <  2:168771/131‑1                                                                                                                                                                                                                                                                                                                                                                   AGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTACGAGAAAACATCAGTTGCAGACGTCCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1191787‑1192080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccgTGCTCTGGCACCAGGTCGGCGGCGGACGTCTGCAACTGATGTTTTCTCGTAATCGCCTG  <  NC_000913/1192096‑1192038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.