Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 72 [0] [0] 72 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)67 (1.030) 51/268 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048
                                                                                                                                           |                                                                                                                                             
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            >  1:245540‑M1/1‑140 (MQ=255)
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATAGTCGTGAAGGTAagt                                                                                                                                            >  2:1062332‑M1/1‑140 (MQ=255)
taccaaattggCAAAATTTAGCAAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAATAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTAGATTCGTGAAAGTAagt                                                                                                                                            >  1:67854‑M1/5‑140 (MQ=255)
 tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACGGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTAGAGTCGTGAAGGTAagtg                                                                                                                                           >  1:271532‑M1/1‑139 (MQ=255)
    aacttggctacacTTTGCCAATTTGGTAATACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAACAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                        <  1:486818‑M1/137‑8 (MQ=255)
     catctgctaTATTTTCCCAATTTTGTATACCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGTGTGGCCACCCGAAGAGCAGATTGTTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa                                                                                                                                       <  1:121102‑M1/139‑9 (MQ=255)
         tGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagata                                                                                                                                   >  2:586045‑M1/1‑131 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACCCCTGAAGAGCAGAGTGATAAAACAATACACGTCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                >  2:1138688‑M1/1‑128 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                >  2:834067‑M1/1‑128 (MQ=255)
            tAAATCTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                <  2:23812‑M1/143‑16 (MQ=255)
              aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGGAGAGCAGAATGATCAAAAAATTTACCGCACTAGGCGCGTATATTCGTGAAGGTAagtgaaaagatactcga                                                                                                                              >  1:775816‑M1/1‑126 (MQ=255)
              aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                              >  1:286468‑M1/1‑126 (MQ=255)
                     ccAATTTGGTAAAACAGTTGCATCACAACAGGTTATATCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatgatcgattctttt                                                                                                                       >  2:1204728‑M1/1‑119 (MQ=255)
                     ccAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTAGATTCGTGAAGGTAagtgaaaagatcatcgattctttg                                                                                                                       >  2:544346‑M1/1‑119 (MQ=255)
                        agttggTAAGACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                    <  1:813310‑M1/141‑28 (MQ=255)
                             gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAACAATTACACTCATTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcaattgg                                                                                                               >  2:1194949‑M1/1‑111 (MQ=255)
                              tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATGAAAAAATTTACCGCACTAGGCCCGCATATTCGGGAAGAAAagtgcaaagataagcgctcctttgtcgatggtt                                                                                                              >  1:787738‑M1/1‑110 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                           <  1:370621‑M1/143‑37 (MQ=255)
                                  aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTGGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                          >  1:591667‑M1/1‑106 (MQ=255)
                                   cAGTGGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                         <  2:959453‑M1/143‑39 (MQ=255)
                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                      >  1:227359‑M1/1‑102 (MQ=255)
                                         cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                   >  2:641633‑M1/1‑99 (MQ=255)
                                         cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataacggattctttttcgcttgcctggctgtaggg                                                                                                   >  2:81609‑M1/1‑99 (MQ=255)
                                             acaacaGGAGATAGCAATGGCGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                                                                                               <  2:265967‑M1/143‑49 (MQ=255)
                                                acaGTAGATAGCAATGACGTTACCGAGTGGGCACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacg                                                                                            <  1:1130562‑M1/143‑52 (MQ=255)
                                                   ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                         <  2:539079‑M1/143‑55 (MQ=255)
                                                    gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCAGATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaa                                                                                        >  1:905043‑M1/1‑88 (MQ=255)
                                                         aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                                   <  2:282229‑M1/143‑61 (MQ=255)
                                                               gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                             <  1:834067‑M1/143‑67 (MQ=255)
                                                                  gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtgaacgtgaaaccggcaccggaag                                                                          >  1:571841‑M1/1‑74 (MQ=255)
                                                                   ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                         <  1:55413‑M1/143‑71 (MQ=255)
                                                                       cGAGTGGACACCCGAAGACCAGATTGATCAAAGAATTTACCGCGCTAGGCGCGTATATTCGTGAAGGTAagtggaaagataatcgattcttttgcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                     <  1:1137971‑M1/143‑75 (MQ=255)
                                                                               cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                             <  2:227359‑M1/143‑83 (MQ=255)
                                                                                acCCGAAGCGCAGATGGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                            <  2:1159766‑M1/143‑84 (MQ=255)
                                                                                acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                            <  2:591667‑M1/143‑84 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          >  1:159528‑M1/1‑58 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          >  2:1196997‑M1/1‑58 (MQ=255)
                                                                                   cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc                                                         >  2:1157215‑M1/1‑57 (MQ=255)
                                                                                   cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgcgaattctggggc                                                         >  1:936995‑M1/1‑57 (MQ=255)
                                                                                    gAAGAGCAGATTGATCAAAAAATGTACCGCACTAAGCCCGTATATTCGTGAAGGTAagtgcaaagataatcagtcgtgttgcgtgtgtctggctctctgcgtcaacgtgaaaccggcaccgtcagtgcgtgaattctggggct                                                        >  1:975254‑M1/1‑56 (MQ=255)
                                                                                       gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGATGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                     <  1:1194242‑M1/143‑91 (MQ=255)
                                                                                         gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgacaccggcaccggaagtgcgtgcattgccgcgtagatgg                                                   >  1:464776‑M1/1‑51 (MQ=255)
                                                                                            gATTTATCAAAAAATTTCCCGGACTAGGCCCGTATATTCGCGAAGGTAagtgcaaagacaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                <  2:79349‑M1/143‑96 (MQ=255)
                                                                                            gATTGGTCAAAAAATGTACCGCACTAGGCCCGTATAGTCGTGAAGGTGtgtgctaacataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                <  2:273044‑M1/143‑96 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                           <  2:228046‑M1/143‑101 (MQ=255)
                                                                                                  tCAAAAAATTTACAGAAATAGTTCCGTTTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                          <  1:387424‑M1/143‑102 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                        >  2:576759‑M1/1‑40 (MQ=255)
                                                                                                     agatgtttaccggACTAGGTGCGTATATTCGTGAAGGTAagtgcaaagatactcgattcttttgcgattgtctgggtgtatgcgtcaacgtggagccgggaccggaagtgcgtgaattctggggctggtggatggagctggaa                                       <  1:931978‑M1/138‑105 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtggattcgggggctggtgggtggagctggag                                       >  2:116982‑M1/1‑39 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                       >  2:973947‑M1/1‑39 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                       <  2:231267‑M1/143‑105 (MQ=255)
                                                                                                     aaaaaGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                       <  2:556094‑M1/143‑105 (MQ=255)
                                                                                                        aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgactctttttcgattgtgtggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatactggggctggtggatggagctggaggcg                                    >  1:376239‑M1/1‑36 (MQ=255)
                                                                                                          tttACCGCACTAGGCCCGTATATTCTTGAAGCTAagtgcaaagataatcgattctttttcgcttgtccgcctgtatgcgtcaacgtgaaaccggcaccggacgtgcgcgaattctggggctggtggatggagctggaagcgca                                  >  2:258019‑M1/1‑34 (MQ=255)
                                                                                                           ttACCGCACTCGGCCCGTATATTCGTGAACATAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                                 <  1:1100645‑M1/143‑111 (MQ=255)
                                                                                                             tccgCTCTAGGCTTGTATATTCGTGAAGGTAagtgcaaaggtagacgattcagcgtcgactgtccggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                               <  2:45353‑M1/142‑113 (MQ=255)
                                                                                                             aCCGCACTAGGCCCGTATGTTCGTGAAGGTAagtgcaaagataatcgattgtttttcgattgtctggctggatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                               <  2:44290‑M1/143‑113 (MQ=255)
                                                                                                              ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctataagcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagccggaagcgccggaa                              >  1:1109325‑M1/1‑30 (MQ=255)
                                                                                                                     aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                       <  2:571841‑M1/143‑121 (MQ=255)
                                                                                                                      ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcggaggaatcccgttt                      >  1:676899‑M1/1‑22 (MQ=255)
                                                                                                                      ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttt                      <  1:696145‑M1/143‑122 (MQ=255)
                                                                                                                        cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctcgggctggtggatggagctggaagcgcaggaatcccgtctta                    >  1:742425‑M1/1‑20 (MQ=255)
                                                                                                                              tatTCGTGAGAGTAagtgcaaagataaccgagtcttgttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca              <  2:57043‑M1/143‑130 (MQ=255)
                                                                                                                                 tCGTCAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattccggggctggtggatggagctgggagcgcaggaatccccttttacctcaaagt           >  1:1123442‑M1/1‑11 (MQ=255)
                                                                                                                                   gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgccacagggatcgtaagtgcgtgaattctggggctggtggatggagctggcagcgcaggaataccgttttacatacagttaa         >  2:755622‑M1/1‑9 (MQ=255)
                                                                                                                                   gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac         <  1:586045‑M1/143‑135 (MQ=255)
                                                                                                                                   gTGAAGGCAagtgcaaagataatcgattctttttcgattgtctggctggatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac         <  1:286687‑M1/143‑135 (MQ=255)
                                                                                                                                     gtaagtaagtgcaaagataatcgactcttgtttgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca       <  2:315124‑M1/139‑137 (MQ=255)
                                                                                                                                      aaGGTAagtgcaaagataatcgattctttttcgattgtcaggctgtatgcaacaacgtgaaaccggcaccggaagtgcgggaattctggggctggtggatggaggtggaagcggagggatgccgtttgacctccagttggcag      >  1:1173457‑M1/1‑6 (MQ=255)
                                                                                                                                          tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  1:973947‑M1/143‑142 (MQ=255)
                                                                                                                                          tAagtgcaaagataatcgatgctttttcgagtggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  2:967693‑M1/143‑142 (MQ=255)
                                                                                                                                          gaagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  2:264456‑M1/142‑142 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257768‑258048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.