New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1287084	44 (0.640)	4 (0.070)	3/244	9.5	7.9%	noncoding (153/171 nt)	rttR	rtT sRNA, processed from tyrT transcript
	?	NC_000913	1287557 =	56 (0.950)					noncoding (66/85 nt)	tyrT	tRNA‑Tyr
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGT  >  NC_000913/1286943‑1287223                                                                                                                                              |                                                                                                                                             cagCGGCAACGCTCTCTCTCTGTCTTGCGAGCGGGACCACCGTCGACTACTCTCAGCCTTCCACTCTTGGGCTGAATGTCGGATTGCGGATGTGTAAGAGGTTTTGGGGACTTTAGGAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                             <  1:668616/141‑1 (MQ=2)   gCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCACGCATGGGCAGAATATCTGATTGCGGATTCGCTTGGAAGATCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAcg                                                                                                                                           >  1:557472/1‑142 (MQ=14)      gCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑Ag                                                                                                                                       >  2:1147174/1‑143 (MQ=255)          cGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGGTTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCt                                                                                                                                   <  2:568191/143‑1 (MQ=255)           gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTCAGAGTTCCGGGACTTTTGAAAGTGATGGTGGCGGCGGAAGGATTCCTC‑CGctcta                                                                                                                                  >  1:1074028/1‑142 (MQ=17)             tctctcGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTgcg                                                                                                                                <  2:244590/143‑1 (MQ=255)               tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTgcgcg                                                                                                                              >  1:1056441/1‑143 (MQ=255)                 tcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCt                                                                                                                            >  1:837974/1‑143 (MQ=255)                     tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGACTCGCTTGAAACTTCAGGGACTTCTGAAAGTGATGGCGGTGGCGGCACGATCACTC‑ACCCCCGCGCACCTCGc                                                                                                                        >  1:108557/1‑143 (MQ=17)                               gCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTc                                                                                                              >  2:765213/1‑143 (MQ=255)                                  gAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGtt                                                                                                           <  2:837974/143‑1 (MQ=255)                                                   tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCGTTGGGGTCGTTGCCTGCGGCAACGctct                                                                                          >  2:38731/1‑143 (MQ=255)                                                           ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTgg                                                                                  >  2:107899/1‑143 (MQ=255)                                                              cccgactgtgCAGAATATTTGAGTGCGGATTCTCTTGAGATTCCAGGCACCTTCACAAGTGATTGTCCTGGGCGAACGATTACTC‑AGCGCCGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                                                               <  2:365863/134‑1 (MQ=14)                                                                  cATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGa                                                                           <  1:644193/143‑1 (MQ=255)                                                                        cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGaa                                                                     <  2:1056441/143‑1 (MQ=255)                                                                                ttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGGACGTTgggc                                                             >  2:1082592/1‑141 (MQ=255)                                                                                 tggttGCGGATTCGCTTGAGAGTTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCg                                                            <  1:758297/140‑1 (MQ=255)                                                                                        ggATGCGCTGGAGAGTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTtc                                                     <  1:276618/143‑1 (MQ=255)                                                                                              gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGGAGCTTGTCATcc                                               >  2:386312/1‑143 (MQ=255)                                                                                               cTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAGCGCTCTCTCGCTGGCGCGCGCGTCGAACGTTGGTGGAAGCTTCTCATCCt                                              >  1:287755/1‑143 (MQ=17)                                                                                                ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCCTA‑AGCGCTGCGCGCTTGGACCGTGGGTAAGTCTCCGGGTGCAACGCGCTCTCCCTCGCACTCGTGACAAACCATGATCGAAGCTTCTCTTCCtt                                             >  1:97492/1‑143 (MQ=9)                                                                                                  gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCGATGGTAGAGAG‑GTCGCGCTTCGCGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCGCCCCGCAAACCTTGCTCGTAGCTTCTTGCCCTTcc                                           >  1:1171423/1‑143 (MQ=9)                                                                                                      gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCtt                                                      >  1:135771/1‑128 (MQ=255)                                                                                                      gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCtt                                                      <  2:135771/128‑1 (MQ=255)                                                                                                            ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCCCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                 >  2:800285/1‑143 (MQ=255)                                                                                                             ggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                <  2:381662/141‑1 (MQ=37)                                                                                                                    gAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTGGGGTCGTCGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTCCTCATCCTTCCCCGCGTGGGCAGCAGAtt                         >  1:760670/1‑143 (MQ=11)                                                                                                                     aaaGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCGACGCTCTCTCGCTGGCGCTCGAGTCGAACACAGGTCGCAGCGTAGCTTCCTGCCGCGCCTGGGGAGaaactta                        >  1:11744/1‑138 (MQ=11)                                                                                                                     aaaGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                        >  2:545575/1‑143 (MQ=39)                                                                                                                      aaGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATCGGCAGAACAtttg                       >  1:278960/1‑142 (MQ=9)                                                                                                                         tGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGATTGAGTCGTACCTGGGTCGAAGCTTCTCATGCTTCCACGCCTGGGcgggctaggtaact                    >  1:418347/1‑130 (MQ=11)                                                                                                                            tggtggtggGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAg                                                         <  1:19099/103‑1 (MQ=33)                                                                                                                             ggtggtggGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCGGGGCAGaaccgcaaagcgccg                >  1:547960/1‑130 (MQ=11)                                                                                                                              gtggtggGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGAACCTTGGTCGAACCTTCCCATCCTTCCCCGCACGGGCAGAATATTTCATTGCGGa               >  1:809731/1‑143 (MQ=11)                                                                                                                              gtggtggGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCTCGAGGCGAACCTTGGTCGAAGCGTCTCCTCCTTCCCAGCATGGGCAGAATATATAATTGCGGa               >  1:996581/1‑143 (MQ=11)                                                                                                                                 gtggGGGAAGGATTACTC‑GGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTc            <  2:1048515/143‑1 (MQ=255)                                                                                                                                  tggGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCg           >  2:1003765/1‑143 (MQ=38)                                                                                                                                    ggggAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTTGAGTCGAACCTTGGTCGAAGCTTCTCATCCCTCCCTTGATGGGCGGAATACTTCATAGCGGATTCggc         >  2:814348/1‑141 (MQ=11)                                                                                                                                    ggggAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCATCCCAACCCGCTCGTGTTGGGGGGCATATTTAATTGCGGATTCGtt         >  2:813684/1‑143 (MQ=11)                                                                                                                                      ggAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTAAGTTCGGGTCCGTTgg       >  2:893571/1‑143 (MQ=14)                                                                                                                                      ggAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg       <  2:408081/143‑1 (MQ=40)                                                                                                                                      ggAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg       <  2:144518/143‑1 (MQ=40)                                                                                                                                         aGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGaa    <  2:390214/143‑1 (MQ=255)                                                                                                                                           gATTACTC‑AGCGCTGCGCGCGTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGGGGTGGCTGCTTACCCGGCTCGCAGCCCAGCTATCACCCCCTCAGGTGCAGAATATTTAATTGCGGATTCGTTGGGAAGt  <  2:278960/143‑1 (MQ=2)                                                                                                                                              |                                                                                                                                             CTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTC‑AGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGT  >  NC_000913/1286943‑1287223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.