New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3643086 =	51 (0.740)	3 (0.050)	3/268	10.2	5.7%	coding (46/753 nt)	rsmJ	16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
	?	NC_000913	3643106 =	51 (0.790)					coding (26/753 nt)	rsmJ	16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC  >  NC_000913/3642944‑3643225                                                                                                                                               |                                                                                                                                            gCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATaa                                                                                                                                             <  2:785489/143‑1 (MQ=255)  cTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAg                                                                                                                                            <  1:32710/143‑1 (MQ=255)   tCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAgg                                                                                                                                           >  2:590172/1‑143 (MQ=255)              aagcaacaaAGATGCCGCCAAGTTTTGGCTCATCACGCATGCGCAATTCCAGATGTTACGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATAGTGCTCCAGCCCACAGCGAGCCCCCAGAACAGATAAGGCACCGTCTcca                                                                                                                                >  1:460446/4‑142 (MQ=255)                             cgccAAGTTTTGTGTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTtcatca                                                                                                                 <  1:53364/143‑1 (MQ=255)                                    ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCCGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTGTCATCGATTAAGc                                                                                                          >  2:186342/1‑143 (MQ=255)                                    ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGc                                                                                                          >  2:915484/1‑143 (MQ=255)                                     tttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa                                                                                                         <  1:264669/143‑1 (MQ=255)                                     tttGGCGCATCACGCGTGCGCAATTCCAGATGTTCCGGCGGTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa                                                                                                         <  1:587361/143‑1 (MQ=255)                                         gCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAtt                                                                                                     >  1:798304/1‑143 (MQ=255)                                             atcaCGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTGATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCa                                                                                                 <  1:1107086/143‑1 (MQ=255)                                                    ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGCCCGTCATAGTCTGTGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                          >  2:874735/1‑143 (MQ=255)                                                    ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                          >  2:681074/1‑143 (MQ=255)                                                    ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                          >  2:677353/1‑143 (MQ=255)                                                        gcAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCa                                                                                      >  1:1063365/1‑143 (MQ=255)                                                         cAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGCTTCATCAATTACGCATGTTTTCAccgcctgtgccg                                                                                     >  2:266784/1‑132 (MQ=255)                                                         cAATTCCAGATGTTCCGGCGTTAACACCAGCCCCATTACCAAAGAATCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGGTTCATCCATTAAGCAGAGTTTCACGCAATGATcgg                                                                                     >  1:258601/1‑141 (MQ=255)                                                            ttgcAGATGTGCCGGCGTTAACACCTGCGCCATCAGGGTGTCGTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGccc                                                                                  <  2:704678/140‑1 (MQ=255)                                                                aGATGTTCCGGCGTTAACACCAGCGCCATCCGGTTGTCTTCATCGTGCTCCAGCCCCCAGCCGGCCGCCAGAACAGATCAGGCACCGTCTCCGGTGCCCGTTTCATCAATTAAGCAGATATTCACTGACTCATCAGCCCTTac                                                                              >  1:55567/1‑142 (MQ=255)                                                                aGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACCGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCCTCCCTTac                                                                              >  2:964581/1‑142 (MQ=255)                                                                  aTGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATg                                                                            <  2:386083/143‑1 (MQ=255)                                                                         ggCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCCCCAGAACAGATAACCGACCCTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCCCTGACTGATCAGCCCTTAATGCCGTAAt                                                                     >  1:424457/1‑143 (MQ=255)                                                                          gCGTTAACCCCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCCTCAATTCAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATg                                                                    <  2:825163/143‑1 (MQ=255)                                                                               aaCACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCa                                                               <  2:102589/143‑1 (MQ=255)                                                                                  acCAGCGCCATCAGGGTGTCTTAATCGTGCTCCAGCCCCCGGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgca                                                            <  1:426981/143‑1 (MQ=255)                                                                                   ccAGCGCCATCAGGTTGTCTTCATCGTGCGCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgcat                                                           <  2:831298/143‑1 (MQ=255)                                                                                         ccATCAGGTTGTCGTCATCGAGCTCCAGCCCCCAGCGAGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCGGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAACGCTCCAgcatcgcatc                                                     <  1:115071/143‑1 (MQ=255)                                                                                            tCAGGTTGTCTTCATGGTGCTCCAGCCCCCAGCGGGCCGTCAGAACAGATAATGCACCGTCTCCGGTGCCTGTGTCATCTATTCACCCGATTTTCACTGCATGCTCAGCCCTTAATGCCGTAATTCTCCAGCATCGCATCCAg                                                  <  1:545638/143‑1 (MQ=255)                                                                                               ggTTGTCTTCATCGTGATCCAGCCCCCAACGGGCCGCCAGACCAGATAAGGCACCGTCTCCGGTGCCTGCATCCTAAAACACGCAGAATTTCACTGAATGAACAGCGCTTAATCCACTAAAGCCCCAgcatagcgacccgcgc                                               >  1:779323/1‑134 (MQ=255)                                                                                                gTTGTCTTCACCGTGCTCCCGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCAGCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGc                                              <  2:1106222/143‑1 (MQ=255)                                                                                                      ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                        <  1:405962/143‑1 (MQ=255)                                                                                                      ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                        >  1:727592/1‑143 (MQ=255)                                                                                                      ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACGGAATGATCAGCCCTTAATGCCGTCATGCTCCGGCAGCGCGTCCAGATGCGGtgcg                                        >  2:442233/1‑140 (MQ=255)                                                                                                      ttCATCGTGCTACAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATAAATTGAGCAGAGGTTCACTGAAGGAGCAGCCGTTAGTGCCGCGATGACTGAGCATCGCATCCAGcctctgcaca                                        >  1:620593/1‑134 (MQ=255)                                                                                                          tCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCAGCGCTTCACGAc                                    >  1:348057/1‑143 (MQ=255)                                                                                                                 ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                             <  2:129400/143‑1 (MQ=255)                                                                                                                 ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                             <  2:1051881/143‑1 (MQ=255)                                                                                                                     cccccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAGTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCgg                         >  1:764378/1‑142 (MQ=255)                                                                                                                       cccAGCGGGCTGCCAGAACACATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGttt                       <  2:216167/143‑1 (MQ=255)                                                                                                                        ccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTg                      <  2:798304/143‑1 (MQ=255)                                                                                                                          aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGaa                    <  1:1017652/143‑1 (MQ=255)                                                                                                                          aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCACCTGCGGTCCACGACCGCGGAcgcgccgtca                    >  1:1095079/1‑137 (MQ=255)                                                                                                                            cGGGCCGCCCGAACAGATAATGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGACCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                  <  1:268568/143‑1 (MQ=255)                                                                                                                            cGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                  >  1:908988/1‑143 (MQ=255)                                                                                                                             gggCCGCCAGAACAGATAATGCACCGTCTCCTGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAg                 <  2:1185290/143‑1 (MQ=255)                                                                                                                                ccgtccgAACAGATACTGCACCGTCTCCGGGGCCTGCTTCATCAACTAAGCAGATTTTCACTGACTGATCAGCCCTGACTGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATc              <  1:163676/137‑1 (MQ=255)                                                                                                                                ccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGACGCGTTTGCACAGacc              >  2:884169/1‑141 (MQ=255)                                                                                                                                            aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc  <  1:874735/143‑1 (MQ=255)                                                                                                                                            aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc  <  1:681074/143‑1 (MQ=255)                                                                                                                                            aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc  <  1:677353/143‑1 (MQ=255)                                                                                                                                            aTAAGGCACCGTCTCCGGTGCCTGGTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCTTGCATCGCATCCAACTGCGGTTCACGACCACGGAAGCGTCTGGACAGATCCATCGGCtcttc  >  1:418171/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                            GCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC  >  NC_000913/3642944‑3643225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.